FFCP PHASE1:Hg19::chr1:93297622..93297635,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:93297622..93297635,+
|short_description=p2@RPL5
|description=CAGE_peak_2_at_RPL5_5end
|association_with_transcript=0bp_to_ENST00000490963_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6125 | |EntrezGene=6125 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10360 | |HGNC=10360 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000490963_5end | |||
|cluster_id=chr1:93297622..93297635,+ | |||
|coexpression_cluster_id=C1162 | |||
|description=CAGE_peak_2_at_RPL5_5end | |||
|id=chr1:93297622..93297635,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.04e-33!682;CL:0000548!1.64e-33!679;CL:0000004!1.64e-33!679;CL:0000255!1.64e-33!679;CL:0000003!4.66e-21!722;CL:0000144!2.01e-20!625;CL:0000055!6.20e-15!180;CL:0002321!2.88e-14!248;CL:0000220!5.81e-14!246;CL:0002371!2.14e-13!591;CL:0000063!2.77e-12!578;CL:0000066!7.08e-10!254;CL:0000393!9.76e-10!60;CL:0000211!9.76e-10!60;CL:0000680!1.84e-09!57;CL:0000056!1.84e-09!57;CL:0000355!1.84e-09!57;CL:0000187!1.18e-08!54;CL:0000034!1.03e-07!444;CL:0000359!2.48e-07!32;CL:0000723!2.99e-07!436;CL:0000222!4.74e-07!119;CL:0000192!6.76e-07!42;CL:0000514!6.76e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.70e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.66e-14,250;CL:0000066,5.83e-10,253;CL:0000393,1.68e-09,61;CL:0000211,1.68e-09,61;CL:0000680,3.20e-09,58;CL:0000056,3.20e-09,58;CL:0000355,3.20e-09,58;CL:0000187,2.00e-08,55;CL:0000359,2.48e-07,32;CL:0000034,4.92e-07,441;CL:0000222,8.99e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.82e-25!239;DOID:162!5.36e-24!235;DOID:0050686!3.97e-13!137;DOID:2531!1.69e-11!51;DOID:0060083!1.69e-11!51;DOID:305!1.20e-09!106;DOID:1240!8.29e-09!39;DOID:0050687!1.71e-08!143;DOID:8692!6.99e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.31e-07;31!DOID:1240;1.73e-07;39!DOID:2531;4.39e-07;51!DOID:0060083;4.39e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.82e-25,239;DOID:162,5.36e-24,235;DOID:0050686,3.97e-13,137;DOID:2531,1.69e-11,51;DOID:0060083,1.69e-11,51;DOID:305,1.20e-09,106;DOID:1240,8.29e-09,39;DOID:0050687,1.71e-08,143;DOID:8692,6.99e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.05e-10!83;UBERON:0002329!6.05e-10!83;UBERON:0003077!6.05e-10!83;UBERON:0003059!6.05e-10!83;UBERON:0007282!6.05e-10!83;UBERON:0009618!6.05e-10!83;UBERON:0007285!6.05e-10!83;UBERON:0004290!2.31e-09!70;UBERON:0000490!8.83e-09!138;UBERON:0000486!2.68e-08!82;UBERON:0001134!2.72e-08!61;UBERON:0002036!2.72e-08!61;UBERON:0003082!2.72e-08!61;UBERON:0001637!1.17e-07!42;UBERON:0003509!1.17e-07!42;UBERON:0004572!1.17e-07!42;UBERON:0002385!1.59e-07!63;UBERON:0001015!1.59e-07!63;UBERON:0000383!1.59e-07!63;UBERON:0001737!9.91e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.90e-07;9!UBERON:0001557;9.90e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,1.02e-09,148;UBERON:0002329,3.68e-09,71;UBERON:0003059,3.68e-09,71;UBERON:0007282,3.68e-09,71;UBERON:0004290,3.68e-09,71;UBERON:0009618,3.68e-09,71;UBERON:0003077,8.31e-09,72;UBERON:0007285,8.31e-09,72;UBERON:0007524,9.24e-09,73;UBERON:0000486,3.89e-08,83;UBERON:0001134,4.33e-08,62;UBERON:0002036,4.33e-08,62;UBERON:0003082,4.33e-08,62;UBERON:0001637,1.17e-07,42;UBERON:0003509,1.17e-07,42;UBERON:0004572,1.17e-07,42;UBERON:0002385,2.40e-07,64;UBERON:0001015,2.40e-07,64;UBERON:0000383,2.40e-07,64;UBERON:0001737,9.91e-07,9 | |||
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| ||
|short_description=p2@RPL5 | |||
}} | }} |
Latest revision as of 20:55, 19 September 2015
Short description: | p2@RPL5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RPL5_5end |
Coexpression cluster: | C1162_embryonic_iPS_Keratinocyte_giant_teratocarcinoma_acute_chronic |
Association with transcript: | 0bp_to_ENST00000490963_5end |
EntrezGene: | RPL5 |
HGNC: | 10360 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.66e-14 | 250 |
epithelial cell | 5.83e-10 | 253 |
electrically responsive cell | 1.68e-09 | 61 |
electrically active cell | 1.68e-09 | 61 |
muscle precursor cell | 3.20e-09 | 58 |
myoblast | 3.20e-09 | 58 |
multi-potent skeletal muscle stem cell | 3.20e-09 | 58 |
muscle cell | 2.00e-08 | 55 |
vascular associated smooth muscle cell | 2.48e-07 | 32 |
stem cell | 4.92e-07 | 441 |
mesodermal cell | 8.99e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 1.02e-09 | 148 |
somite | 3.68e-09 | 71 |
presomitic mesoderm | 3.68e-09 | 71 |
presumptive segmental plate | 3.68e-09 | 71 |
dermomyotome | 3.68e-09 | 71 |
trunk paraxial mesoderm | 3.68e-09 | 71 |
paraxial mesoderm | 8.31e-09 | 72 |
presumptive paraxial mesoderm | 8.31e-09 | 72 |
dense mesenchyme tissue | 9.24e-09 | 73 |
multilaminar epithelium | 3.89e-08 | 83 |
skeletal muscle tissue | 4.33e-08 | 62 |
striated muscle tissue | 4.33e-08 | 62 |
myotome | 4.33e-08 | 62 |
artery | 1.17e-07 | 42 |
arterial blood vessel | 1.17e-07 | 42 |
arterial system | 1.17e-07 | 42 |
muscle tissue | 2.40e-07 | 64 |
musculature | 2.40e-07 | 64 |
musculature of body | 2.40e-07 | 64 |
larynx | 9.91e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.82e-25 | 239 |
cancer | 5.36e-24 | 235 |
organ system cancer | 3.97e-13 | 137 |
hematologic cancer | 1.69e-11 | 51 |
immune system cancer | 1.69e-11 | 51 |
carcinoma | 1.20e-09 | 106 |
leukemia | 8.29e-09 | 39 |
cell type cancer | 1.71e-08 | 143 |
myeloid leukemia | 6.99e-08 | 31 |