FFCP PHASE1:Hg19::chr1:202163046..202163067,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59352 | |EntrezGene=59352 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19719 | |HGNC=19719 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HBX8 | |UniProt=Q9HBX8 | ||
|association_with_transcript=17bp_to_ENST00000367278_5end | |association_with_transcript=17bp_to_ENST00000367278_5end | ||
|cluster_id=chr1:202163046..202163067,+ | |||
|coexpression_cluster_id=C3921 | |||
|description=CAGE_peak_4_at_LGR6_5end | |description=CAGE_peak_4_at_LGR6_5end | ||
|id=chr1:202163046..202163067,+ | |id=chr1:202163046..202163067,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000767;7.98e-08;3!CL:0000039;9.34e-08;7!CL:0000586;9.34e-08;7!CL:0000817;8.02e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,9.46e-08,7;CL:0000586,9.46e-08,7;CL:0000767,1.30e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006242;4.32e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.93e-42!115;UBERON:0001049!2.07e-17!57;UBERON:0005068!2.07e-17!57;UBERON:0006241!2.07e-17!57;UBERON:0007135!2.07e-17!57;UBERON:0002616!2.85e-15!59;UBERON:0003075!4.22e-13!86;UBERON:0007284!4.22e-13!86;UBERON:0000955!9.33e-13!69;UBERON:0006238!9.33e-13!69;UBERON:0002346!4.32e-12!90;UBERON:0001017!5.54e-12!82;UBERON:0005743!8.25e-12!86;UBERON:0002298!9.01e-11!8;UBERON:0004733!1.85e-10!12;UBERON:0002028!1.85e-10!12;UBERON:0007277!1.85e-10!12;UBERON:0003080!5.70e-10!42;UBERON:0000073!7.41e-10!94;UBERON:0001016!7.41e-10!94;UBERON:0003076!1.11e-09!15;UBERON:0003057!1.11e-09!15;UBERON:0004732!1.74e-09!13;UBERON:0003135!3.43e-09!11;UBERON:0002780!4.70e-09!41;UBERON:0001890!4.70e-09!41;UBERON:0006240!4.70e-09!41;UBERON:0000153!8.98e-09!129;UBERON:0007811!8.98e-09!129;UBERON:0000033!3.05e-08!123;UBERON:0001894!4.42e-08!7;UBERON:0006222!4.42e-08!7;UBERON:0000473!1.73e-07!8;UBERON:0004121!2.26e-07!169;UBERON:0000924!5.84e-07!173;UBERON:0006601!5.84e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;6.75e-22;6!UBERON:0000988;1.98e-16;3!UBERON:0004733;2.76e-15;12!UBERON:0002028;2.76e-15;12!UBERON:0004732;4.55e-14;13!UBERON:0002148;1.20e-11;2!UBERON:0006331;1.20e-11;2!UBERON:0009662;1.20e-11;2!UBERON:0002680;1.65e-09;9!UBERON:0001895;1.65e-09;9!UBERON:0003978;3.42e-08;3!UBERON:0000946;3.42e-08;3!UBERON:0003135;3.67e-08;11!UBERON:0001896;4.80e-08;3!UBERON:0005290;4.80e-08;3!UBERON:0002146;4.71e-07;1!UBERON:0005623;4.71e-07;1!UBERON:0002171;6.24e-07;1!UBERON:0006518;6.24e-07;1!UBERON:0008949;6.24e-07;1!UBERON:0000101;6.24e-07;1!UBERON:0002167;6.24e-07;1!UBERON:0000473;7.81e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,5.33e-22,6;UBERON:0000988,9.96e-17,3;UBERON:0004733,1.93e-15,12;UBERON:0002028,1.93e-15,12;UBERON:0007277,1.93e-15,12;UBERON:0004732,3.28e-14,13;UBERON:0003076,3.06e-12,15;UBERON:0003057,3.06e-12,15;UBERON:0002148,8.98e-12,2;UBERON:0006331,8.98e-12,2;UBERON:0009662,8.98e-12,2;UBERON:0007023,3.75e-11,114;UBERON:0002680,1.01e-09,9;UBERON:0001895,1.01e-09,9;UBERON:0010092,1.01e-09,9;UBERON:0003135,3.48e-08,11;UBERON:0003978,4.25e-08,3;UBERON:0009751,4.25e-08,3;UBERON:0000946,4.25e-08,3;UBERON:0002523,4.25e-08,3;UBERON:0005983,4.25e-08,3;UBERON:0002165,4.25e-08,3;UBERON:0002062,4.25e-08,3;UBERON:0007280,4.25e-08,3;UBERON:0001896,6.26e-08,3;UBERON:0005290,6.26e-08,3;UBERON:0010096,6.26e-08,3;UBERON:0002146,4.58e-07,1;UBERON:0005623,4.58e-07,1;UBERON:0002171,6.08e-07,1;UBERON:0006518,6.08e-07,1;UBERON:0008949,6.08e-07,1;UBERON:0000101,6.08e-07,1;UBERON:0002167,6.08e-07,1;UBERON:0000473,7.90e-07,8 | |||
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| ||
|short_description=p4@LGR6 | |short_description=p4@LGR6 | ||
}} | }} |
Latest revision as of 20:16, 19 September 2015
Short description: | p4@LGR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LGR6_5end |
Coexpression cluster: | C3921_aorta_gall_heart_skin_pituitary_lung_testicular |
Association with transcript: | 17bp_to_ENST00000367278_5end |
EntrezGene: | LGR6 |
HGNC: | 19719 |
UniProt: | Q9HBX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 9.46e-08 | 7 |
germ cell | 9.46e-08 | 7 |
basophil | 1.30e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
brainstem | 5.33e-22 | 6 |
pons | 9.96e-17 | 3 |
segmental subdivision of hindbrain | 1.93e-15 | 12 |
hindbrain | 1.93e-15 | 12 |
presumptive hindbrain | 1.93e-15 | 12 |
segmental subdivision of nervous system | 3.28e-14 | 13 |
posterior neural tube | 3.06e-12 | 15 |
chordal neural plate | 3.06e-12 | 15 |
locus ceruleus | 8.98e-12 | 2 |
brainstem nucleus | 8.98e-12 | 2 |
hindbrain nucleus | 8.98e-12 | 2 |
adult organism | 3.75e-11 | 114 |
regional part of metencephalon | 1.01e-09 | 9 |
metencephalon | 1.01e-09 | 9 |
future metencephalon | 1.01e-09 | 9 |
male reproductive organ | 3.48e-08 | 11 |
valve | 4.25e-08 | 3 |
cardiac mesenchyme | 4.25e-08 | 3 |
cardial valve | 4.25e-08 | 3 |
tunica intima | 4.25e-08 | 3 |
heart layer | 4.25e-08 | 3 |
endocardium | 4.25e-08 | 3 |
endocardial cushion | 4.25e-08 | 3 |
presumptive endocardium | 4.25e-08 | 3 |
medulla oblongata | 6.26e-08 | 3 |
myelencephalon | 6.26e-08 | 3 |
future myelencephalon | 6.26e-08 | 3 |
pulmonary valve | 4.58e-07 | 1 |
semi-lunar valve | 4.58e-07 | 1 |
lower lobe of right lung | 6.08e-07 | 1 |
right lung lobe | 6.08e-07 | 1 |
lower lobe of lung | 6.08e-07 | 1 |
lobe of lung | 6.08e-07 | 1 |
right lung | 6.08e-07 | 1 |
testis | 7.90e-07 | 8 |