FFCP PHASE1:Hg19::chr5:112540287..112540317,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4163 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6935 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-14bp_to_ENST00000511847_5end | |||
|cluster_id=chr5:112540287..112540317,- | |||
|description=CAGE_peak_3_at_MCC_5end | |||
|id=chr5:112540287..112540317,- | |||
|ontology_enrichment_celltype=CL:0000223!9.27e-10!59;CL:0002076!6.49e-09!43;CL:0002077!5.98e-07!33;CL:0000221!7.48e-07!71;CL:0000148!7.49e-07!10;CL:0000541!7.49e-07!10;CL:0000622!9.12e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000150;5.32e-12;9!CL:0000622;1.07e-11;5!CL:0002251;4.43e-10;20!CL:0000154;1.12e-09;6!CL:0002076;1.56e-09;42!CL:0002077;1.77e-09;34!CL:0000240;1.12e-08;6!CL:0000311;1.12e-08;6!CL:0000079;1.12e-08;6!CL:0000237;1.12e-08;6!CL:0000148;1.29e-08;10!CL:0002159;1.50e-08;14!CL:0002623;3.35e-08;3!CL:0000362;6.23e-08;9!CL:0000312;5.65e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.20e-12,42;CL:0000150,6.61e-12,9;CL:0000622,9.41e-12,5;CL:0000223,2.31e-11,58;CL:0002251,4.28e-10,20;CL:0002077,6.34e-10,34;CL:0000154,1.01e-09,6;CL:0000148,1.15e-08,10;CL:0000541,1.15e-08,10;CL:0000240,1.42e-08,6;CL:0000311,1.42e-08,6;CL:0000079,1.42e-08,6;CL:0000237,1.42e-08,6;CL:0000036,1.42e-08,6;CL:0000357,1.42e-08,6;CL:0000114,1.42e-08,6;CL:0002159,1.69e-08,14;CL:0000221,2.23e-08,72;CL:0002623,3.46e-08,3;CL:0000362,6.26e-08,9;CL:0000333,8.99e-08,41;CL:0000312,6.39e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;1.12e-08;6!CL:0000114;1.12e-08;6!CL:0000223;2.80e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;4.17e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.34e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.50e-27!115;UBERON:0001049!1.00e-25!57;UBERON:0005068!1.00e-25!57;UBERON:0006241!1.00e-25!57;UBERON:0007135!1.00e-25!57;UBERON:0000924!1.28e-24!173;UBERON:0006601!1.28e-24!173;UBERON:0004121!3.41e-24!169;UBERON:0000153!1.19e-23!129;UBERON:0007811!1.19e-23!129;UBERON:0001017!2.10e-23!82;UBERON:0000033!3.54e-23!123;UBERON:0005743!8.00e-23!86;UBERON:0000955!1.68e-22!69;UBERON:0006238!1.68e-22!69;UBERON:0000073!3.02e-22!94;UBERON:0001016!3.02e-22!94;UBERON:0002616!1.26e-20!59;UBERON:0002346!5.47e-18!90;UBERON:0003075!1.03e-17!86;UBERON:0007284!1.03e-17!86;UBERON:0002780!1.56e-17!41;UBERON:0001890!1.56e-17!41;UBERON:0006240!1.56e-17!41;UBERON:0002020!5.16e-17!34;UBERON:0003528!5.16e-17!34;UBERON:0003080!7.03e-17!42;UBERON:0001893!1.04e-16!34;UBERON:0002791!3.98e-16!33;UBERON:0001869!3.63e-15!32;UBERON:0000956!1.87e-11!25;UBERON:0000203!1.87e-11!25;UBERON:0000475!2.10e-11!365;UBERON:0002619!5.62e-11!22;UBERON:0003056!1.49e-10!61;UBERON:0004111!1.56e-10!241;UBERON:0003076!2.60e-10!15;UBERON:0003057!2.60e-10!15;UBERON:0001950!1.72e-09!20;UBERON:0000161!2.12e-09!35;UBERON:0000477!5.53e-09!286;UBERON:0004733!1.89e-08!12;UBERON:0002028!1.89e-08!12;UBERON:0007277!1.89e-08!12;UBERON:0000166!4.55e-08!21;UBERON:0001004!5.17e-08!72;UBERON:0004732!1.39e-07!13;UBERON:0002308!2.98e-07!9;UBERON:0000125!2.98e-07!9;UBERON:0002420!3.95e-07!9;UBERON:0007245!3.95e-07!9;UBERON:0010009!3.95e-07!9;UBERON:0010011!3.95e-07!9;UBERON:0000454!3.95e-07!9;UBERON:0004119!5.08e-07!169;UBERON:0000925!5.08e-07!169;UBERON:0006595!5.08e-07!169;UBERON:0000165!8.60e-07!28;UBERON:0000930!8.60e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0004733;4.65e-13;12!UBERON:0002028;4.65e-13;12!UBERON:0004732;6.41e-12;13!UBERON:0000161;8.73e-09;19!UBERON:0000166;8.73e-09;19!UBERON:0002298;1.12e-08;6!UBERON:0002680;3.00e-08;9!UBERON:0001895;3.00e-08;9!UBERON:0000165;4.63e-08;28!UBERON:0001896;6.10e-07;3!UBERON:0005290;6.10e-07;3!UBERON:0000974;6.93e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.44e-14,171;UBERON:0000924,5.44e-14,171;UBERON:0006601,5.44e-14,171;UBERON:0004733,4.70e-13,12;UBERON:0002028,4.70e-13,12;UBERON:0007277,4.70e-13,12;UBERON:0003076,2.09e-12,15;UBERON:0003057,2.09e-12,15;UBERON:0004732,6.47e-12,13;UBERON:0010371,1.79e-09,104;UBERON:0000166,4.39e-09,22;UBERON:0002298,7.80e-09,6;UBERON:0011216,1.31e-08,223;UBERON:0000161,2.02e-08,36;UBERON:0007023,2.26e-08,114;UBERON:0000955,2.93e-08,68;UBERON:0006238,2.93e-08,68;UBERON:0002680,3.24e-08,9;UBERON:0001895,3.24e-08,9;UBERON:0010092,3.24e-08,9;UBERON:0000165,1.16e-07,29;UBERON:0000930,1.16e-07,29;UBERON:0001049,1.46e-07,56;UBERON:0005068,1.46e-07,56;UBERON:0006241,1.46e-07,56;UBERON:0007135,1.46e-07,56;UBERON:0001016,1.76e-07,89;UBERON:0003102,3.26e-07,99;UBERON:0000073,3.33e-07,53;UBERON:0002616,3.33e-07,53;UBERON:0001896,5.50e-07,3;UBERON:0005290,5.50e-07,3;UBERON:0010096,5.50e-07,3;UBERON:0001017,5.55e-07,81 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95490539384291,0,2.82109249330279,0.85870796139317,0.273748850145768,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.309977343527296,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,3.27295344709002,0.860413786167011,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0.482022059766964,0,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,35.4914097501126,11.7939266001315,12.4065880403095,0,0,0,1.86575485194663,1.1240175325762,0,1.20364978706088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,2.97727704209012,0,0,0,0,0,0,0,0,1.65094525159639,5.72982638337417,8.20522130470329,0,13.1619190660254,6.9078903304101,10.861404439962,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0,7.01772646061497,3.49907757956406,0.918515585316854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.4915837338065,0,0,1.72279661398852,1.30012049207304,0,0,0,0,0,0,0.145016693914229,0,0,1.15699440752685,0.768760269460425,4.72167036229961,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,4.69211592875051,0,4.9896214411693,0.86101074534246,1.68471475667626,4.87773168890343,0.459446800413919,0,0,0,0,0,0,0,0,0,0,6.61608583148786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,1.68803299692615,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.789147245095469,0,0,1.93866549219044,0.463840490809256,1.99613798001194,0.520855522170466,0.874599999961957,0,0.227586896570999,0,0,2.06846023944879,0.874813840149763,0.173624994933292,0,1.92954301800653,0,1.10579259931225,1.18219047581419,0.658156191461918,0,1.95193241990045,1.15425387755696,0,0,0.628303510868405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,1.41542379259422,0,0.702793337176017,0,0.391329237864179,0,1.57833761139756,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,4.60564267847575,0,0.52418000472609,0,0,0,0,3.9765496760252,0,0.90392296312213,0,0,0.886351143382302,0,0,0.213452994739353,0,0,0,0,0,0,3.53541051925193,0,0,0,2.60055530911367,1.20084057741958,1.09524303113594,0,0.429765441419957,0,0.558564802544508,0,0,0,0.429226048136571,0,0.335917362433631,0,0,0.393915911536118,0.329663433524666,0.471824806979294,0,0,0.795229689809303,1.49823746722733,0,0,0,0,0.77380195455795,0.728994679896296,14.4236915667684,0.157611414598396,0,0,1.43429871466276,0,0,0,0,0,0,0,0,0,0,3.28605065408364,5.71553711344522,0,1.80996138906171,1.58679122091228,0,0,0.320362237703084,0.157204305099666,0,0,0,0,15.9585314442545,0,0.5013797880454,0,0,0,0,0.610131324509816,0.500763722825999,1.72022758707021,1.10929051536852,1.73869928235874,19.783854795881,0.624902039810533,14.7099644015398,0,0,1.87333962322753,1.01444720027578,0,0,0,0,0,0,0,0,0.310874401165561,0,0.159296767163702,0,0,0,0,1.04349012362347,0,0,0,0,0,0,0,0,0,0,0,0,1.07220795687463,0,0,0,0,0,0.308801447160972,0.219284049578707,0.176689145945881,0,0,0,0,0,0.829550616910385,0.974301544196942,0,0.817826971279221,0,1.96618327002975,0,0,0,0,0,0,0.419638523158333,0,4.98788048084242,0.107824811396682,0,9.28281924632118,1.18812770967818,0,0.123935764259002,0,0,0,0,0,0,0.834979926253974,0,0.478901577171454,0.205116364240755,0.504143392443436,0.691572524642179,2.90656162137332,0,13.1517942791374,0,11.5560017068658,5.66075764136657,0,0,0,0.225630985047772,0,0,0,0.49131575253029,0,0.472763092328763,0.781078098613847,0.413373593002368,0.507326481551255,0.546974809018219,0,2.48105589194647,0,1.91643641459393,1.07140367175657,0,0,0,0,0,0,0.883606528698812,0.526182188502793,0,0,3.06123062117005,0.942693539496011,0,0,0,0,5.36074081324923,0,0,0,0,6.63091725321718,5.63370974410035,2.76503864725637,0,0,0,1.69354820076372,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.439762066981716,0,0,0.218559560503957,0,0.245148321753905,0,1.17785080268967,0.297046400327086,0.4226557275834,0,0,0,0,2.85686301769052,0.352894871715692,0,0,0,0.860037498908708,0,0.679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,1.24119595034274,1.91910583710883,0,0.129177819672012,0.186224142887574,0,0,0,3.70118471424834,0.342233301085281,1.34704106029175,0.502055437748735,0,0.651226148887796,0,0,0,4.69281884806909,0.122241444182866,0.406896178315738,0.665756774185513,0.201273793591026,0 | |||
|short_description=p3@MCC | |||
}} |
Latest revision as of 18:44, 19 September 2015
Short description: | p3@MCC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MCC_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENST00000511847_5end |
EntrezGene: | MCC |
HGNC: | 6935 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.20e-12 | 42 |
glandular epithelial cell | 6.61e-12 | 9 |
acinar cell | 9.41e-12 | 5 |
endodermal cell | 2.31e-11 | 58 |
epithelial cell of alimentary canal | 4.28e-10 | 20 |
ecto-epithelial cell | 6.34e-10 | 34 |
protein secreting cell | 1.01e-09 | 6 |
melanocyte | 1.15e-08 | 10 |
melanoblast | 1.15e-08 | 10 |
stratified squamous epithelial cell | 1.42e-08 | 6 |
keratin accumulating cell | 1.42e-08 | 6 |
stratified epithelial cell | 1.42e-08 | 6 |
keratinizing barrier epithelial cell | 1.42e-08 | 6 |
epithelial fate stem cell | 1.42e-08 | 6 |
stratified epithelial stem cell | 1.42e-08 | 6 |
surface ectodermal cell | 1.42e-08 | 6 |
general ecto-epithelial cell | 1.69e-08 | 14 |
ectodermal cell | 2.23e-08 | 72 |
acinar cell of salivary gland | 3.46e-08 | 3 |
epidermal cell | 6.26e-08 | 9 |
migratory neural crest cell | 8.99e-08 | 41 |
keratinocyte | 6.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.44e-14 | 171 |
ectoderm | 5.44e-14 | 171 |
presumptive ectoderm | 5.44e-14 | 171 |
segmental subdivision of hindbrain | 4.70e-13 | 12 |
hindbrain | 4.70e-13 | 12 |
presumptive hindbrain | 4.70e-13 | 12 |
posterior neural tube | 2.09e-12 | 15 |
chordal neural plate | 2.09e-12 | 15 |
segmental subdivision of nervous system | 6.47e-12 | 13 |
ecto-epithelium | 1.79e-09 | 104 |
oral opening | 4.39e-09 | 22 |
brainstem | 7.80e-09 | 6 |
organ system subdivision | 1.31e-08 | 223 |
orifice | 2.02e-08 | 36 |
adult organism | 2.26e-08 | 114 |
brain | 2.93e-08 | 68 |
future brain | 2.93e-08 | 68 |
regional part of metencephalon | 3.24e-08 | 9 |
metencephalon | 3.24e-08 | 9 |
future metencephalon | 3.24e-08 | 9 |
mouth | 1.16e-07 | 29 |
stomodeum | 1.16e-07 | 29 |
neural tube | 1.46e-07 | 56 |
neural rod | 1.46e-07 | 56 |
future spinal cord | 1.46e-07 | 56 |
neural keel | 1.46e-07 | 56 |
nervous system | 1.76e-07 | 89 |
surface structure | 3.26e-07 | 99 |
regional part of nervous system | 3.33e-07 | 53 |
regional part of brain | 3.33e-07 | 53 |
medulla oblongata | 5.50e-07 | 3 |
myelencephalon | 5.50e-07 | 3 |
future myelencephalon | 5.50e-07 | 3 |
central nervous system | 5.55e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.34e-08 | 14 |