FFCP PHASE1:Hg19::chr22:30987849..30987904,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23481 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8848 | |||
|TSSclassifier=strong | |||
|UniProt=B5MCF9,C9JXJ1,O00541,B2RDF2 | |||
|association_with_transcript=0bp_to_ENST00000402284,ENST00000406208,ENST00000433575,ENST00000466614,uc003aij.1,uc003aik.1,uc003ail.1,uc003aim.1_5end | |||
|cluster_id=chr22:30987849..30987904,- | |||
|coexpression_cluster_id=C447 | |||
|description=CAGE_peak_1_at_PES1_5end | |||
|id=chr22:30987849..30987904,- | |||
|ontology_enrichment_celltype=CL:0002321!1.18e-18!248;CL:0000220!1.81e-18!246;CL:0000066!4.86e-18!254;CL:0000548!7.18e-17!679;CL:0000004!7.18e-17!679;CL:0000255!7.18e-17!679;CL:0000012!4.31e-16!682;CL:0000055!1.66e-13!180;CL:0000222!4.91e-10!119;CL:0000183!3.89e-09!59;CL:0000144!4.03e-09!625;CL:0000393!5.76e-08!60;CL:0000211!5.76e-08!60;CL:0000003!1.04e-07!722;CL:0000076!2.74e-07!62;CL:0000187!4.02e-07!54;CL:0000680!5.95e-07!57;CL:0000056!5.95e-07!57;CL:0000355!5.95e-07!57;CL:0002371!6.96e-07!591 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.90e-19,250;CL:0000066,7.46e-18,253;CL:0000222,1.45e-10,121;CL:0000393,4.00e-08,61;CL:0000211,4.00e-08,61;CL:0000076,2.33e-07,63;CL:0000187,2.81e-07,55;CL:0000680,4.17e-07,58;CL:0000056,4.17e-07,58;CL:0000355,4.17e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.24e-13!239;DOID:162!2.10e-13!235;DOID:0050687!2.91e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.24e-13,239;DOID:162,2.10e-13,235;DOID:0050687,2.91e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.18e-09!238;UBERON:0009142!2.18e-09!238;UBERON:0003914!3.13e-09!118;UBERON:0004290!7.21e-09!70;UBERON:0000119!7.57e-09!312;UBERON:0002100!1.22e-08!216;UBERON:0000486!2.28e-08!82;UBERON:0000483!3.34e-08!309;UBERON:0001637!5.49e-08!42;UBERON:0003509!5.49e-08!42;UBERON:0004572!5.49e-08!42;UBERON:0000055!8.00e-08!69;UBERON:0005256!8.18e-08!143;UBERON:0000490!9.91e-08!138;UBERON:0001981!1.55e-07!60;UBERON:0007500!1.55e-07!60;UBERON:0004537!1.55e-07!60;UBERON:0006965!1.55e-07!60;UBERON:0002049!2.21e-07!79;UBERON:0007798!2.21e-07!79;UBERON:0004872!2.30e-07!84;UBERON:0000914!2.73e-07!83;UBERON:0002329!2.73e-07!83;UBERON:0003077!2.73e-07!83;UBERON:0003059!2.73e-07!83;UBERON:0007282!2.73e-07!83;UBERON:0009618!2.73e-07!83;UBERON:0007285!2.73e-07!83 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.06e-11,78;UBERON:0000490,5.37e-10,148;UBERON:0002100,9.54e-10,199;UBERON:0003104,1.88e-09,160;UBERON:0009142,1.88e-09,160;UBERON:0003914,4.44e-09,117;UBERON:0002329,4.99e-09,71;UBERON:0003059,4.99e-09,71;UBERON:0007282,4.99e-09,71;UBERON:0004290,4.99e-09,71;UBERON:0009618,4.99e-09,71;UBERON:0000119,5.28e-09,309;UBERON:0003077,8.62e-09,72;UBERON:0007285,8.62e-09,72;UBERON:0007524,1.12e-08,73;UBERON:0000486,1.59e-08,83;UBERON:0000483,2.37e-08,306;UBERON:0000055,4.44e-08,68;UBERON:0001637,5.49e-08,42;UBERON:0003509,5.49e-08,42;UBERON:0004572,5.49e-08,42;UBERON:0007500,8.28e-08,59;UBERON:0001981,8.28e-08,59;UBERON:0004537,8.28e-08,59;UBERON:0006965,8.28e-08,59;UBERON:0002049,1.32e-07,78;UBERON:0007798,1.32e-07,78;UBERON:0004872,1.41e-07,83;UBERON:0005256,1.85e-07,122 | |||
|phase1_expression=22.1647622710079,37.895792728704,30.3051968806338,53.0388481271591,43.3552261594469,48.8509573496206,58.2589719787114,69.4891860769514,64.2516645371603,92.6416940610688,236.554595942653,42.1591848211232,56.4461333408891,42.9469244771362,57.0003486252015,45.7181099587207,53.03711846611,56.9641870502151,42.9380862935646,87.2928301764426,113.832385714293,104.380422252203,30.054778648761,37.5035924699703,34.5242258885708,71.5229477800824,83.7426012389447,82.6463203793632,12.194292582316,12.666370137208,19.3520154145095,97.4586497947663,141.867987744556,96.8755506636984,50.5086147783567,94.6847088366227,32.0024478874983,8.30993112797816,14.6397446653203,14.7567392086779,21.9437164755126,19.4336199611388,13.6515050846119,23.8453111598486,22.6725566213286,25.9564945470963,19.2916100631718,16.446715520873,19.2017949954964,13.5215424391411,16.1381245113333,13.2430048737608,13.7898272294647,12.2642089880927,10.8341189275473,19.2007186333457,26.471896555611,18.652049208942,14.0798590490615,11.8743740018155,10.8687311385837,15.5030111087757,20.1458294197848,18.7538890234385,11.6083695451434,11.3477044938228,8.71951148593805,15.3261685806613,16.1659704710262,12.3797641481916,10.2917915447673,11.4166067156145,9.17740923578565,28.7307189384241,25.2999116958402,21.8044991328711,19.3205245571972,22.5265339262259,17.6798145366788,12.5405607246149,13.7252507267372,15.5264530699939,24.6394742245852,19.1148513941746,15.1216573156804,23.0434320185914,24.8245511962328,18.9668305184979,22.4755256746853,20.0351288452426,25.0453706408157,29.3618594685469,21.0250275468876,18.5039860010636,13.4522055115569,43.1949899031126,20.8512356320663,18.8645166119599,16.4481199199607,25.2451608039924,19.881258264649,21.7785990637977,13.6378709885538,19.6082404117906,16.7925367260657,14.8427709371026,17.602251144726,31.1261906933391,24.581216688817,29.9276986378691,22.1080014228679,26.3720808018898,21.9464113479849,18.7278579662799,20.9071047609954,20.2823723428643,14.9455992504749,16.8377448286489,25.0489495099308,17.2025323735012,18.8814201618361,14.2567806667256,23.9414439333659,30.0768536212883,11.2437653897111,21.0731754319175,25.4549679045524,14.1124720257313,13.3720097891754,19.5512945241779,80.4562658836074,45.6076584598473,52.9351006032216,66.5048040387602,69.6859695783887,51.9999003069357,64.418161711139,45.2570429381451,31.3855592984705,48.5587380443015,55.5994193437488,40.4070447910443,98.7240231272789,85.6512062832032,11.0346113842592,12.7114708228465,24.9960965775466,19.7947218173434,22.307801520425,21.5445350771148,83.0826862792827,98.9269784372043,58.6667447716834,59.357333902021,113.684347212885,86.6621832111212,127.486929587454,33.5941786920128,39.8458214209115,33.1373406637024,61.2300562005903,69.9450337261032,55.6461491209826,68.7529960246774,65.6214977784225,39.8276788146996,55.2342256660378,50.1121088150784,98.1226479781653,85.4339093611316,68.5174522299723,5.27121669744253,3.87780264148325,74.1359888642308,44.2305037008833,47.2331808508883,46.8728500078795,68.5539523589665,53.5549257119519,91.9511264233384,75.7917869680905,81.4002909776628,43.5695449559673,57.7908783178962,68.9809231138796,58.2726096432986,42.6370184115199,110.599715825552,108.319546660121,100.973512413368,75.3221349981077,89.6025224651926,89.6776111799449,98.7369171116807,45.934688532351,54.1699339344897,53.4194288678707,36.8280885757437,38.8209078967334,141.985172462332,153.784282348675,37.8756256396649,57.4294006212316,49.8715407871529,53.9942473683431,48.4250717362451,32.4514207238249,56.4892272136905,71.3970750041671,45.0606090407177,54.678430499167,66.3201322346529,51.9384747361732,60.8031674507685,38.7123061169707,45.7383860373832,45.7953924257634,71.4387581110844,35.0710113827161,39.9265760342465,49.701342952326,47.9579987563568,65.2808280395377,35.3667361288833,46.9123327416236,36.7109882097925,55.4980362889659,58.0480385248105,63.441892806757,46.7511358119321,55.7629080435139,59.8562868884361,61.0153176086282,67.540298510253,62.1607146086162,52.9379437956456,57.7503585335668,75.5980452254602,79.9091430970202,81.9437501603839,78.3087206399997,84.755103751946,84.4683404035504,71.0560994004067,84.1790085387735,94.2630534518656,103.341763647451,144.449027017549,82.31480226628,114.666794880723,13.9430538304014,32.4332981503617,40.1737136543355,57.3902029239046,36.1586009316754,63.8232254310515,53.6678895648179,106.781665594739,71.073983495023,59.9047240175686,101.000574646201,148.71067429498,80.825551534153,37.2136599969997,45.7893907519705,57.4578462089074,60.1881166349594,39.763117817031,58.4751254489864,69.5373791296847,19.6973604869918,23.634430779063,28.983076646302,24.370796836562,42.4994784343115,43.666729950655,66.4524238455134,65.6832701041554,108.88068088292,27.0964780842769,28.5276926202852,24.0500614027296,23.4915524069647,22.2186682830429,48.7028849220937,56.9162754081834,87.9130854075352,85.5362230113526,54.8070536108714,48.6555753707146,43.7314441924785,96.0963392839741,87.192013766656,73.7049772500548,39.2986015903644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| |||
|short_description=p1@PES1 | |||
}} |
Latest revision as of 18:33, 19 September 2015
Short description: | p1@PES1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PES1_5end |
Coexpression cluster: | C447_Alveolar_Bronchial_Smooth_Renal_Tracheal_Keratocytes_Hepatic |
Association with transcript: | 0bp_to_ENST00000402284, ENST00000406208, ENST00000433575, ENST00000466614, uc003aij.1, uc003aik.1, uc003ail.1, uc003aim.1_5end |
EntrezGene: | PES1 |
HGNC: | 8848 |
UniProt: | B5MCF9C9JXJ1O00541B2RDF2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.90e-19 | 250 |
epithelial cell | 7.46e-18 | 253 |
mesodermal cell | 1.45e-10 | 121 |
electrically responsive cell | 4.00e-08 | 61 |
electrically active cell | 4.00e-08 | 61 |
squamous epithelial cell | 2.33e-07 | 63 |
muscle cell | 2.81e-07 | 55 |
muscle precursor cell | 4.17e-07 | 58 |
myoblast | 4.17e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.17e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.06e-11 | 78 |
unilaminar epithelium | 5.37e-10 | 148 |
trunk | 9.54e-10 | 199 |
mesenchyme | 1.88e-09 | 160 |
entire embryonic mesenchyme | 1.88e-09 | 160 |
epithelial tube | 4.44e-09 | 117 |
somite | 4.99e-09 | 71 |
presomitic mesoderm | 4.99e-09 | 71 |
presumptive segmental plate | 4.99e-09 | 71 |
dermomyotome | 4.99e-09 | 71 |
trunk paraxial mesoderm | 4.99e-09 | 71 |
cell layer | 5.28e-09 | 309 |
paraxial mesoderm | 8.62e-09 | 72 |
presumptive paraxial mesoderm | 8.62e-09 | 72 |
dense mesenchyme tissue | 1.12e-08 | 73 |
multilaminar epithelium | 1.59e-08 | 83 |
epithelium | 2.37e-08 | 306 |
vessel | 4.44e-08 | 68 |
artery | 5.49e-08 | 42 |
arterial blood vessel | 5.49e-08 | 42 |
arterial system | 5.49e-08 | 42 |
epithelial tube open at both ends | 8.28e-08 | 59 |
blood vessel | 8.28e-08 | 59 |
blood vasculature | 8.28e-08 | 59 |
vascular cord | 8.28e-08 | 59 |
vasculature | 1.32e-07 | 78 |
vascular system | 1.32e-07 | 78 |
splanchnic layer of lateral plate mesoderm | 1.41e-07 | 83 |
trunk mesenchyme | 1.85e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.24e-13 | 239 |
cancer | 2.10e-13 | 235 |
cell type cancer | 2.91e-08 | 143 |