FFCP PHASE1:Hg19::chr18:47901433..47901491,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:47901433..47901491,+
|short_description=p1@SKA1
|description=CAGE_peak_1_at_SKA1_5end
|association_with_transcript=2bp_to_ENST00000494518_5end
|EntrezGen...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=220134 | |EntrezGene=220134 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28109 | |HGNC=28109 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000494518_5end | |||
|cluster_id=chr18:47901433..47901491,+ | |||
|coexpression_cluster_id=C3724 | |||
|description=CAGE_peak_1_at_SKA1_5end | |||
|id=chr18:47901433..47901491,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.26e-17!679;CL:0000004!2.26e-17!679;CL:0000255!2.26e-17!679;CL:0000012!6.96e-17!682;CL:0000066!1.38e-13!254;CL:0000055!2.92e-10!180;CL:0000003!6.24e-10!722;CL:0002321!1.07e-09!248;CL:0000220!2.90e-09!246;CL:0000144!2.49e-07!625;CL:0002319!4.39e-07!25;CL:0000063!6.90e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.35e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.95e-12,253;CL:0002321,1.56e-08,250;CL:0002319,3.08e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.42e-37!235;DOID:14566!5.06e-37!239;DOID:0050686!5.47e-21!137;DOID:2531!2.91e-18!51;DOID:0060083!2.91e-18!51;DOID:0050687!6.53e-16!143;DOID:1240!1.16e-14!39;DOID:305!9.84e-12!106;DOID:8692!1.39e-10!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;6.33e-12;39!DOID:2531;2.03e-11;51!DOID:0060083;2.03e-11;51!DOID:8692;1.17e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.73e-37,235;DOID:14566,2.29e-36,239;DOID:0050686,2.39e-20,137;DOID:2531,1.01e-18,51;DOID:0060083,1.01e-18,51;DOID:0050687,1.93e-15,143;DOID:1240,5.03e-15,39;DOID:305,2.72e-11,106;DOID:8692,7.85e-11,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@SKA1 | |||
}} | }} |
Latest revision as of 18:25, 19 September 2015
Short description: | p1@SKA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SKA1_5end |
Coexpression cluster: | C3724_retinoblastoma_Reticulocytes_acute_adrenal_NK_myxofibrosarcoma_Mesenchymal |
Association with transcript: | 2bp_to_ENST00000494518_5end |
EntrezGene: | SKA1 |
HGNC: | 28109 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.95e-12 | 253 |
embryonic cell | 1.56e-08 | 250 |
neural cell | 3.08e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.73e-37 | 235 |
disease of cellular proliferation | 2.29e-36 | 239 |
organ system cancer | 2.39e-20 | 137 |
hematologic cancer | 1.01e-18 | 51 |
immune system cancer | 1.01e-18 | 51 |
cell type cancer | 1.93e-15 | 143 |
leukemia | 5.03e-15 | 39 |
carcinoma | 2.72e-11 | 106 |
myeloid leukemia | 7.85e-11 | 31 |