FFCP PHASE1:Hg19::chr6:74104542..74104559,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:74104542..74104559,+
|short_description=p1@DDX43
|description=CAGE_peak_1_at_DDX43_5end
|association_with_transcript=-16bp_to_ENST00000539829_5end
|Entrez...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55510 | |EntrezGene=55510 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18677 | |HGNC=18677 | ||
|TSSclassifier=strong | |||
|UniProt=B4E0C8 | |UniProt=B4E0C8 | ||
|association_with_transcript=-16bp_to_ENST00000539829_5end | |||
|cluster_id=chr6:74104542..74104559,+ | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_1_at_DDX43_5end | |||
|id=chr6:74104542..74104559,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.65e-12!42;CL:0000860!2.58e-11!45;CL:0000766!7.83e-09!76;CL:0000557!3.41e-08!71;CL:0000738!9.08e-08!140;CL:0002009!1.75e-07!65;CL:0000839!2.42e-07!70;CL:0002194!6.49e-07!63;CL:0000576!6.49e-07!63;CL:0000040!6.49e-07!63;CL:0000559!6.49e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.67e-18;33!CL:0002057;7.67e-18;33!CL:0000039;7.65e-12;7!CL:0000586;7.65e-12;7!CL:0000473;1.67e-11;39!CL:0000234;1.67e-11;39!CL:0000576;2.28e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.28e-13,42;CL:0002057,1.28e-13,42;CL:0000039,6.93e-12,7;CL:0000586,6.93e-12,7;CL:0000473,2.81e-11,48;CL:0000234,2.81e-11,48;CL:0000766,3.57e-09,72;CL:0000839,1.80e-08,66;CL:0000557,2.85e-08,67;CL:0002194,4.71e-08,59;CL:0000576,4.71e-08,59;CL:0000040,4.71e-08,59;CL:0000559,4.71e-08,59;CL:0002009,1.21e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;2.73e-10;42!UBERON:0009117;2.54e-08;10!UBERON:0005564;2.54e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,6.76e-10,143;DOID:305,1.07e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.57e-07!80;UBERON:0004765!3.14e-07!101;UBERON:0001434!3.14e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002075;5.82e-09;18!UBERON:0001264;2.44e-08;10!UBERON:0000473;1.16e-07;8!UBERON:0002110;3.65e-07;3!UBERON:0002323;6.02e-07;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002075,6.87e-09,18;UBERON:0001264,2.57e-08,10;UBERON:0004458,3.21e-08,49;UBERON:0002323,8.04e-08,46;UBERON:0000473,1.21e-07,8;UBERON:0002371,1.63e-07,76;UBERON:0002553,1.74e-07,61;UBERON:0002110,4.76e-07,3;UBERON:0006242,4.76e-07,3 | |||
|phase1_expression=0,0,0,0,0.893922188854576,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0.37129905888014,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0.383829398097213,0.464448369948228,0,0,0.369754010166788,0,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0.257575567634187,0.145398238779565,0,0.727752183563449,0.232429036905685,3.28934310417461,3.71647645074124,0,7.42866048934392,9.45928919554341,1.03423704220986,5.16387746867061,8.12558919566051,0,1.09162460023138,2.69668181334102,0,4.17207735198922,5.75403413219137,0.329851300186716,4.9865914405408,2.13112375266347,0,6.24123747160254,4.35975574296902,0.75374599577023,7.82224377630302,9.77349801173025,0,9.20694089968912,3.79754864929061,0,0.425208599930087,0,0.112328631146495,0,0.16072558669708,0,0.59675003159727,0.365328307529268,0,0,0,0.853460445133014,0.400395987036012,1.14950487990897,0,0,2.27685187643779,0,0.382273228125229,0,0.560508562981536,0,0.393419540227666,0,0.411202997999018,0.167186495390678,0.32592226663359,0,0,0,0.294605907474837,0.221533894583621,1.35401931882508,0.384273959177026,0.260118695119756,0.493313713811028,0,0.289803085735052,0.14828656316206,0,0,0,0,0.68725489096526,0.506039384039006,0,0,0,0.602300476311091,0.511946444617674,1.24930726552346,0.473554504088034,0,0,0.267440195783507,1.01377082717959,0,0,0,0,0.50133791063589,0,2.3858578411533,0,0,0,0,4.38779902917337,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0.225222960966644,0,0,0,1.31780417436063,3.87780264148325,0,0,0.379891534993739,0.529636723252875,0.286836620748814,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0.168336113954066,0,0.277064115484183,0,0.612975591598039,0.45071417671979,0,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,1.15956511897978,0,0.573609190778008,0.121973706129595,0,0.580969714347592,0.518305275076852,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,5.53143078571493,4.29243081047436,0.246217006087397,0,0,0,1.51183915378974,0.283550194484773,0,0,0,1.97065295158377,0.088048434013226,1.24396869324463,0,0.50496973370552,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0.394061520403854,0,0.513372145118994,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.320182673410333,0,0,0,0,0.767309866440312,0,0,0,0.321707842287215,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0.325378394664303,1.03041011647722,0,0,0,0,0,0,0.308097234229289,0,0.137836572484531,0.107420244868274,0,0,0.0890320356467374,0,0,0.893288987462089,0.4046311234222,0,0,0,0,0,0,0,0.286249773483982,0.372158369359667,0.632758849437452,0.190630193923825,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0.405820753925408,0,0,0.430234056612155,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,1.69338866179106,0,0,0,0,0,0,0,0.80719882876419,0,0,0,0,0,0,0,0,0,0,5.63948020351398,0,0.439524537815682,2.06312886974173,0,10.7971735786437,5.72986763370456,0,0.307160702099232,0,0,0,3.95529298144223,0.211125408127993,0.19924798825107,0,0,0,0,0,9.7057819239113,0,0,0,0,0,0,0.0927680981618513,0,3.38556089410803,0,0.724999575434793,4.09656413827799,1.27126825146383,0,0,0,0,0.885741385813839,0,0,0,0,0.219385397153973,0,3.34616986268648,0.0769502585037971,0,6.45578932286568,7.090853908372,2.82483166997221,12.7600463892768,0.732780747214898,7.99552164027952,0,0,0,0,0,0,0,0,0,34.278889713421,0,0,0,0.265372693510018,0,0,0,0,0.134802265961354,0,0,0,9.00057247087613,0,0,0,0,0,0.300646838828985,0,22.5982316720443,11.915710411518,17.5802434308046,22.6997616568622,0,0,0,0,0,0.17472666824203,3.61170668190395,0,0.0730893170861856,0,0.387956065953678,0,0,0,0.794858446811959,0,5.27988733383968,10.661123093454,1.06726497369676,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.201550417460179,0.360299883542404,0,0,0,0,3.14967940847196,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0.182248669974074,1.0063040627978,0.157611414598396,0.104909176269996,9.92643163282421,0,0,0,0,0,0,0,0,0,0,0,2.71949019648302,0.58620893471233,0,0.517131825446202,0,0,1.40963004463334,0.106787412567695,0.157204305099666,0,0,0,0,0,1.63205341010842,2.0055191521816,0.306345576763462,1.63936315354902,2.35581144375351,0,0,0,0,0.221858103073705,0.372578417648301,0,0,0,0.570930667089935,0,0,0,0.149254802886874,0,0,0.189403005275089,0.754703705257725,1.77962244319307,0.228840068396924,0,0.310874401165561,0,0,0,0,0,0,0,0.150257608997218,0,0,0.181848659202559,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,10.9389584223858,0.138258436151731,0.584580926518165,0.797189041880179,0.163565394255844,0,0,5.70542733068293,0,1.17360902663555,0,0,0,0.139879507719444,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0,0,0,1.42769420259154,0,3.53909170043221,0,0,0,0,0,0.376051641746286,2.21875575573872,0,9.42864100133121,0,0,0,0.781078098613847,0,0,0,2.19303106742873,0.496211178389294,0,0,0,0,0,0,1.1531308121143,0,0,0.475788130837822,0,6.73704893038619,0,0.313972371402056,0,0,0,0,0,0,0,0,1.91244099532837,0,0,0,0,0,0.473328002922261,0.511280428554946,0,0,0,0,0,8.4409200909109,2.31644057466312,0,0,0,0,0,0,2.02164154321867,0,0.879524133963433,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,0.281951753939561,0.128915775947154,0,0,0,3.77134423439091,0.730336388246517,1.37618785021362,0,4.73314686579554,0.0679914901909147,0,0,0,0,0,0,15.8435079347359,2.02717601618299,24.1713526488497,0,38.7796476037046,178.253060436879,9.09344378618873,15.2739554189022,0.829169439458779,0.413731983447581,0.213233981900981,0,0.193766729508018,0.124149428591716,0,0.190941474834495,0.404234377916439,0.435433495793923,0,0.336760265072938,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0.893922188854576,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0.37129905888014,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0.383829398097213,0.464448369948228,0,0,0.369754010166788,0,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0.257575567634187,0.145398238779565,0,0.727752183563449,0.232429036905685,3.28934310417461,3.71647645074124,0,7.42866048934392,9.45928919554341,1.03423704220986,5.16387746867061,8.12558919566051,0,1.09162460023138,2.69668181334102,0,4.17207735198922,5.75403413219137,0.329851300186716,4.9865914405408,2.13112375266347,0,6.24123747160254,4.35975574296902,0.75374599577023,7.82224377630302,9.77349801173025,0,9.20694089968912,3.79754864929061,0,0.425208599930087,0,0.112328631146495,0,0.16072558669708,0,0.59675003159727,0.365328307529268,0,0,0,0.853460445133014,0.400395987036012,1.14950487990897,0,0,2.27685187643779,0,0.382273228125229,0,0.560508562981536,0,0.393419540227666,0,0.411202997999018,0.167186495390678,0.32592226663359,0,0,0,0.294605907474837,0.221533894583621,1.35401931882508,0.384273959177026,0.260118695119756,0.493313713811028,0,0.289803085735052,0.14828656316206,0,0,0,0,0.68725489096526,0.506039384039006,0,0,0,0.602300476311091,0.511946444617674,1.24930726552346,0.473554504088034,0,0,0.267440195783507,1.01377082717959,0,0,0,0,0.50133791063589,0,2.3858578411533,0,0,0,0,4.38779902917337,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0.225222960966644,0,0,0,1.31780417436063,3.87780264148325,0,0,0.379891534993739,0.529636723252875,0.286836620748814,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0.168336113954066,0,0.277064115484183,0,0.612975591598039,0.45071417671979,0,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,1.15956511897978,0,0.573609190778008,0.121973706129595,0,0.580969714347592,0.518305275076852,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,5.53143078571493,4.29243081047436,0.246217006087397,0,0,0,1.51183915378974,0.283550194484773,0,0,0,1.97065295158377,0.088048434013226,1.24396869324463,0,0.50496973370552,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0.394061520403854,0,0.513372145118994,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.320182673410333,0,0,0,0,0.767309866440312,0,0,0,0.321707842287215,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0.325378394664303,1.03041011647722,0,0,0,0,0,0,0.308097234229289,0,0.137836572484531,0.107420244868274,0,0,0.0890320356467374,0,0,0.893288987462089,0.4046311234222,0,0,0,0,0,0,0,0.286249773483982,0.372158369359667,0.632758849437452,0.190630193923825,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0.405820753925408,0,0,0.430234056612155,0,0,0,0,0,0,0.349934720244983,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,1.69338866179106,0,0,0,0,0,0,0,0.80719882876419,0,0,0,0,0,0,0,0,0,0,5.63948020351398,0,0.439524537815682,2.06312886974173,0,10.7971735786437,5.72986763370456,0,0.307160702099232,0,0,0,3.95529298144223,0.211125408127993,0.19924798825107,0,0,0,0,0,9.7057819239113,0,0,0,0,0,0,0.0927680981618513,0,3.38556089410803,0,0.724999575434793,4.09656413827799,1.27126825146383,0,0,0,0,0.885741385813839,0,0,0,0,0.219385397153973,0,3.34616986268648,0.0769502585037971,0,6.45578932286568,7.090853908372,2.82483166997221,12.7600463892768,0.732780747214898,7.99552164027952,0,0,0,0,0,0,0,0,0,34.278889713421,0,0,0,0.265372693510018,0,0,0,0,0.134802265961354,0,0,0,9.00057247087613,0,0,0,0,0,0.300646838828985,0,22.5982316720443,11.915710411518,17.5802434308046,22.6997616568622,0,0,0,0,0,0.17472666824203,3.61170668190395,0,0.0730893170861856,0,0.387956065953678,0,0,0,0.794858446811959,0,5.27988733383968,10.661123093454,1.06726497369676,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.201550417460179,0.360299883542404,0,0,0,0,3.14967940847196,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0.182248669974074,1.0063040627978,0.157611414598396,0.104909176269996,9.92643163282421,0,0,0,0,0,0,0,0,0,0,0,2.71949019648302,0.58620893471233,0,0.517131825446202,0,0,1.40963004463334,0.106787412567695,0.157204305099666,0,0,0,0,0,1.63205341010842,2.0055191521816,0.306345576763462,1.63936315354902,2.35581144375351,0,0,0,0,0.221858103073705,0.372578417648301,0,0,0,0.570930667089935,0,0,0,0.149254802886874,0,0,0.189403005275089,0.754703705257725,1.77962244319307,0.228840068396924,0,0.310874401165561,0,0,0,0,0,0,0,0.150257608997218,0,0,0.181848659202559,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,10.9389584223858,0.138258436151731,0.584580926518165,0.797189041880179,0.163565394255844,0,0,5.70542733068293,0,1.17360902663555,0,0,0,0.139879507719444,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0,0,0,1.42769420259154,0,3.53909170043221,0,0,0,0,0,0.376051641746286,2.21875575573872,0,9.42864100133121,0,0,0,0.781078098613847,0,0,0,2.19303106742873,0.496211178389294,0,0,0,0,0,0,1.1531308121143,0,0,0.475788130837822,0,6.73704893038619,0,0.313972371402056,0,0,0,0,0,0,0,0,1.91244099532837,0,0,0,0,0,0.473328002922261,0.511280428554946,0,0,0,0,0,8.4409200909109,2.31644057466312,0,0,0,0,0,0,2.02164154321867,0,0.879524133963433,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,0.281951753939561,0.128915775947154,0,0,0,3.77134423439091,0.730336388246517,1.37618785021362,0,4.73314686579554,0.0679914901909147,0,0,0,0,0,0,15.8435079347359,2.02717601618299,24.1713526488497,0,38.7796476037046,178.253060436879,9.09344378618873,15.2739554189022,0.829169439458779,0.413731983447581,0.213233981900981,0,0.193766729508018,0.124149428591716,0,0.190941474834495,0.404234377916439,0.435433495793923,0,0.336760265072938,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.122241444182866,0,0,0,0 | ||
|short_description=p1@DDX43 | |||
}} | }} |
Latest revision as of 17:55, 19 September 2015
Short description: | p1@DDX43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DDX43_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | -16bp_to_ENST00000539829_5end |
EntrezGene: | DDX43 |
HGNC: | 18677 |
UniProt: | B4E0C8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.28e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.28e-13 | 42 |
germ line cell | 6.93e-12 | 7 |
germ cell | 6.93e-12 | 7 |
defensive cell | 2.81e-11 | 48 |
phagocyte | 2.81e-11 | 48 |
myeloid leukocyte | 3.57e-09 | 72 |
myeloid lineage restricted progenitor cell | 1.80e-08 | 66 |
granulocyte monocyte progenitor cell | 2.85e-08 | 67 |
monopoietic cell | 4.71e-08 | 59 |
monocyte | 4.71e-08 | 59 |
monoblast | 4.71e-08 | 59 |
promonocyte | 4.71e-08 | 59 |
macrophage dendritic cell progenitor | 1.21e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
viscus | 6.87e-09 | 18 |
pancreas | 2.57e-08 | 10 |
body cavity or lining | 3.21e-08 | 49 |
body cavity | 8.04e-08 | 46 |
testis | 1.21e-07 | 8 |
bone marrow | 1.63e-07 | 76 |
anatomical cavity | 1.74e-07 | 61 |
gallbladder | 4.76e-07 | 3 |
gall bladder primordium | 4.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 6.76e-10 | 143 |
carcinoma | 1.07e-08 | 106 |