FFCP PHASE1:Hg19::chr2:20425105..20425154,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:20425105..20425154,-
|short_description=p7@SDC1
|description=CAGE_peak_7_at_SDC1_5end
|association_with_transcript=39bp_to_ENST00000381150,NM_001006946,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6382 | |EntrezGene=6382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |HGNC=10658 | ||
|TSSclassifier=strong | |||
|UniProt=P18827 | |UniProt=P18827 | ||
|association_with_transcript=39bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |||
|cluster_id=chr2:20425105..20425154,- | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_7_at_SDC1_5end | |||
|id=chr2:20425105..20425154,- | |||
|ontology_enrichment_celltype=CL:0000066!1.06e-25!254;CL:0002076!7.20e-16!43;CL:0000223!4.72e-15!59;CL:0002321!1.18e-12!248;CL:0000220!2.56e-12!246;CL:0002368!7.23e-08!13;CL:0002251!7.24e-08!21;CL:0000221!1.97e-07!71;CL:0002159!6.21e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.42e-13;42!CL:0002251;9.69e-10;20!CL:0002368;2.11e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.15e-23,253;CL:0002076,1.98e-17,42;CL:0000223,4.83e-16,58;CL:0002368,1.17e-09,13;CL:0002251,2.02e-09,20;CL:0002321,6.09e-08,250 | |||
|ontology_enrichment_development_v019=CL:0000223;6.81e-10;58 | |||
|ontology_enrichment_disease=DOID:305!2.34e-12!106;DOID:0050687!2.41e-11!143;DOID:1749!9.06e-09!14;DOID:7!4.50e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.95e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.17e-11,14;DOID:305,8.75e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.44e-22!169;UBERON:0000925!1.44e-22!169;UBERON:0006595!1.44e-22!169;UBERON:0001007!2.89e-17!155;UBERON:0001555!2.89e-17!155;UBERON:0007026!2.89e-17!155;UBERON:0000475!3.59e-16!365;UBERON:0000077!3.71e-15!130;UBERON:0003104!1.55e-14!238;UBERON:0009142!1.55e-14!238;UBERON:0004921!9.97e-14!129;UBERON:0004185!9.97e-14!129;UBERON:0000481!6.76e-13!347;UBERON:0000466!1.17e-12!126;UBERON:0002100!8.19e-12!216;UBERON:0005911!1.82e-11!82;UBERON:0000464!1.83e-11!104;UBERON:0001004!1.89e-11!72;UBERON:0003102!2.47e-11!95;UBERON:0005177!5.19e-11!107;UBERON:0009569!8.34e-11!113;UBERON:0001041!5.88e-10!98;UBERON:0005178!1.09e-09!34;UBERON:0002224!1.09e-09!34;UBERON:0005153!1.98e-09!37;UBERON:0001048!2.29e-09!168;UBERON:0005181!5.29e-09!35;UBERON:0000468!5.61e-09!659;UBERON:0001444!8.10e-09!48;UBERON:0000065!1.39e-08!53;UBERON:0001008!2.96e-08!45;UBERON:0006554!3.16e-08!44;UBERON:0000915!7.25e-08!52;UBERON:0008947!7.72e-08!38;UBERON:0003258!7.72e-08!38;UBERON:0000161!8.98e-08!35;UBERON:0003100!1.69e-07!41;UBERON:0005157!2.30e-07!51;UBERON:0000062!3.10e-07!511;UBERON:0000480!3.55e-07!626;UBERON:0007196!3.69e-07!14;UBERON:0001558!3.69e-07!14;UBERON:0005085!5.75e-07!29;UBERON:0000467!6.10e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0005178;1.07e-09;34!UBERON:0002224;1.07e-09;34!UBERON:0005181;1.28e-09;35!UBERON:0007196;6.46e-08;15!UBERON:0001558;6.46e-08;15!UBERON:0006554;5.22e-07;30!UBERON:0001008;5.22e-07;30!UBERON:0002365;7.90e-07;31!UBERON:0002330;7.90e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.50e-21,160;UBERON:0000925,2.50e-21,160;UBERON:0006595,2.50e-21,160;UBERON:0001007,5.79e-16,145;UBERON:0001555,5.79e-16,145;UBERON:0007026,5.79e-16,145;UBERON:0004921,1.35e-13,118;UBERON:0005177,8.68e-13,101;UBERON:0005911,8.49e-12,82;UBERON:0001004,1.00e-11,74;UBERON:0009569,2.47e-11,112;UBERON:0001041,4.10e-11,87;UBERON:0005178,5.64e-11,34;UBERON:0002224,5.64e-11,34;UBERON:0005181,2.11e-10,35;UBERON:0006554,2.10e-09,47;UBERON:0005153,3.80e-09,37;UBERON:0003102,4.71e-09,99;UBERON:0001008,5.31e-09,48;UBERON:0002100,6.02e-09,199;UBERON:0000915,3.20e-08,52;UBERON:0000065,3.71e-08,54;UBERON:0007196,7.25e-08,15;UBERON:0001558,7.25e-08,15;UBERON:0001048,7.64e-08,160;UBERON:0000033,8.50e-08,56;UBERON:0005157,9.25e-08,47;UBERON:0001444,9.92e-08,49;UBERON:0000161,3.35e-07,36;UBERON:0002365,5.33e-07,31;UBERON:0002330,5.33e-07,31;UBERON:0008947,7.18e-07,38;UBERON:0003258,7.18e-07,38 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0.872338524100369,0,0,0,1.96587149201207,7.6758128476967,3.49506195408276,5.27533956456907,0.247532705920093,0.331397375727916,2.01697543935533,2.41077811209591,1.46062018077475,3.90346239032406,1.60057375499824,2.85600967741954,1.56727360739044,2.0036519099174,1.64249310087461,1.12988375635323,0.916960868975415,0.57470412614962,0.787107813136792,0,0,0,5.51652734687356,6.32532429434325,9.24385025416969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0.434539556882471,1.5905718941022,0.973269740605272,2.07976597760949,1.55210578223795,0.614843499851882,2.42311289670768,17.8504691263346,8.89882662682631,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0.367663080345869,0,0,0,0.112611480483322,0,0.949265659568129,0.366403487860815,0,0,10.4662572514208,0,0.379891534993739,0.397227542439656,0.573673241497627,1.41867352879343,0,0,0.74000264525148,0.311211035399766,0.134710672069688,0,0.151357427644931,0,1.40592859100278,0,0,0.149448680551801,0.822041490506354,0.323745888736263,0.421352420106746,0,0.122834317311768,0,1.18800285728205,0,0.910161361938026,0,0.505008341862199,0.125118519871964,0.277064115484183,0.438977620880838,0.919463387397059,1.05166641234618,0,2.33206526395521,0.640672166455702,0.211931901159562,2.40072876867522,1.75189299705346,1.8034837803194,0.37223371266318,2.70042131586026,1.36411807225678,1.26216887122057,0.644349290496095,2.10139873864455,3.55009592516614,0.503760491138201,1.01736355386293,3.47869535693934,1.63647672354501,2.29443676311203,0.853815942907168,1.85541675650079,1.16193942869518,1.65857688024593,1.26160425437814,2.18986415445498,0,1.28648187638577,4.14404764057442,0.464367928031979,0,0.591534000199219,1.01150814046861,0.723033089650446,0.441175890929576,0.653638332277218,0.237270619111097,0.134831308160164,0.392442930250692,0,0,0,0.4115740113314,0,1.26755034821831,6.87979051674338,2.95394953340702,0,2.21379189377604,1.20097467208968,4.49976170175365,7.86812272803337,6.43385423434437,11.2032018641821,0.977424915930974,1.03993478527958,2.88662684050547,2.78232971940184,0.352226082707465,0,0,0,3.1608175918371,3.43394464837949,0,0.234004265139238,0,0.93733833986777,3.35964256397719,2.1266264586358,3.40322386270824,4.06887513919547,4.98397482914775,0,0,0,0,0.25248486685276,0,0,1.17217447210047,1.71072446022705,0,0,0,2.69114602428866,0,2.71351657537515,1.16344544182,0,0.845302752556,1.59562869950922,1.04007436911366,0.257207374262142,0,0.266422179016099,0,7.5967024754802,1.64648067356154,0,0,0.791951872933429,0,0,0.199945982364114,0,0,0,0.239624855491583,0,1.42636905040718,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,0,0,0,1.24900292158013,0.157702415033935,1.05427273493442,0,6.82222512167955,1.03473071292505,0.664225598535437,1.47495334833363,2.08520674723399,3.32861967686659,0.686286847621712,0,0,0,0.909382714338778,4.99306318531491,4.83824469327489,0.248107807818777,0.767309866440312,0.280660094433074,0.128139149255701,0.511707249066704,1.28683136914886,0,1.54209693802656,1.42049380250502,1.14978018419333,0,0.813472649219715,1.20859449591622,3.20810352485256,11.1417996612435,0.114814448164607,0.546273504020151,0.655622074797121,1.80479845162965,2.00239876471478,1.56869953835371,2.92278449306521,1.68882606228601,0,0.340187410553031,0.647747748306418,0,0,4.01351819083883,1.01950509218015,2.49322802678617,1.56712328305525,0,0,2.05160100093111,0,0,1.75169719801128,0.457847324091717,0.330037999682352,3.44559322797703,1.95018073810956,0,1.54673149267395,0,0,0.137836572484531,0.214840489736547,0.435050081742686,0.596586391912706,0.445160178233687,5.61968712227326,5.76570202095319,1.65896526242959,8.69956915357729,0,2.83331112147576,1.3940745403212,0.308033580176089,0.532306030317022,1.73986598415015,0.9266210955196,0,1.48863347743867,0.632758849437452,0.38126038784765,1.02359116524534,0.42793898803392,1.27281299170375,0,1.61885211824983,0,0.117812402345686,0.202182481573316,0,1.26377536871694,0.975267478179181,0.243713489631284,1.05650146756755,0.818999468447914,0.141405431953713,0,1.65409603063837,0,0,3.47265320560013,1.31178950409327,0,0.92947049429925,0,0.286822704408103,1.27723753317057,0.35667105148125,2.12856638442359,0,0,2.65631221636001,2.44954304171488,5.29221619990316,4.69211592875051,6.53345909167936,1.50630081242847,5.59656984472599,8.42357378338128,11.0857538384169,8.4997658076575,0,0,0,0,0,0,0,0,0.320472213382419,1.92495971052672,3.43056302373444,0,0.577076851905779,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24568648489864,0,0.242721043499027,0,0.284136146806413,0.47748896947538,1.18785872333055,1.22864280839693,0,0,0.890469640183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| ||
|short_description=p7@SDC1 | |||
}} | }} |
Latest revision as of 15:37, 19 September 2015
Short description: | p7@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SDC1_5end |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | 39bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.15e-23 | 253 |
endo-epithelial cell | 1.98e-17 | 42 |
endodermal cell | 4.83e-16 | 58 |
respiratory epithelial cell | 1.17e-09 | 13 |
epithelial cell of alimentary canal | 2.02e-09 | 20 |
embryonic cell | 6.09e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.50e-21 | 160 |
endoderm | 2.50e-21 | 160 |
presumptive endoderm | 2.50e-21 | 160 |
digestive system | 5.79e-16 | 145 |
digestive tract | 5.79e-16 | 145 |
primitive gut | 5.79e-16 | 145 |
subdivision of digestive tract | 1.35e-13 | 118 |
trunk region element | 8.68e-13 | 101 |
endo-epithelium | 8.49e-12 | 82 |
respiratory system | 1.00e-11 | 74 |
subdivision of trunk | 2.47e-11 | 112 |
foregut | 4.10e-11 | 87 |
thoracic cavity element | 5.64e-11 | 34 |
thoracic cavity | 5.64e-11 | 34 |
thoracic segment organ | 2.11e-10 | 35 |
urinary system structure | 2.10e-09 | 47 |
epithelial bud | 3.80e-09 | 37 |
surface structure | 4.71e-09 | 99 |
renal system | 5.31e-09 | 48 |
trunk | 6.02e-09 | 199 |
thoracic segment of trunk | 3.20e-08 | 52 |
respiratory tract | 3.71e-08 | 54 |
tracheobronchial tree | 7.25e-08 | 15 |
lower respiratory tract | 7.25e-08 | 15 |
primordium | 7.64e-08 | 160 |
head | 8.50e-08 | 56 |
epithelial fold | 9.25e-08 | 47 |
subdivision of head | 9.92e-08 | 49 |
orifice | 3.35e-07 | 36 |
exocrine gland | 5.33e-07 | 31 |
exocrine system | 5.33e-07 | 31 |
respiratory primordium | 7.18e-07 | 38 |
endoderm of foregut | 7.18e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.17e-11 | 14 |
carcinoma | 8.75e-08 | 106 |