Personal tools

FFCP PHASE1:Hg19::chr19:51845449..51845465,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{FFCP |id=chr19:51845449..51845465,- |short_description=p4@VSIG10L |description=CAGE_peak_4_at_VSIG10L_5end |association_with_transcript=-71bp_to_ENST00000335624,ENST0000...")
 
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr19:51845449..51845465,-
|DHSsupport=supported 
|short_description=p4@VSIG10L
|DPIdataset=robust
|description=CAGE_peak_4_at_VSIG10L_5end
|association_with_transcript=-71bp_to_ENST00000335624,ENST00000542561,NM_001163922,uc002pwf.2_5end
|EntrezGene=147645
|EntrezGene=147645
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=27111
|HGNC=27111
|TSSclassifier=strong
|UniProt=Q86VR7,A2VDI5
|UniProt=Q86VR7,A2VDI5
|association_with_transcript=-71bp_to_ENST00000335624,ENST00000542561,NM_001163922,uc002pwf.2_5end
|cluster_id=chr19:51845449..51845465,-
|coexpression_cluster_id=C37
|description=CAGE_peak_4_at_VSIG10L_5end
|id=chr19:51845449..51845465,-
|ontology_enrichment_celltype=CL:0000223!6.19e-08!59
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_development_v019=UBERON:0009497;9.25e-18;13!UBERON:0004161;8.77e-15;11!UBERON:0006298;1.77e-08;1!UBERON:0009143;2.12e-08;1!UBERON:0008801;2.12e-08;1!UBERON:0000358;2.44e-08;1!UBERON:0006242;8.40e-08;1!UBERON:0005754;8.40e-08;1!UBERON:0001041;1.85e-07;30!UBERON:0006595;5.31e-07;86!UBERON:0003104;9.65e-07;31
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=DOID:178;3.22e-08;1!DOID:326;3.22e-08;1!DOID:3978;3.22e-08;1!DOID:3394;3.22e-08;1!DOID:5844;3.22e-08;1
|ontology_enrichment_disease_v019_2=DOID:178,3.11e-08,1;DOID:326,3.11e-08,1;DOID:3978,3.11e-08,1;DOID:3394,3.11e-08,1;DOID:5844,3.11e-08,1
|ontology_enrichment_uberon=UBERON:0004119!3.32e-11!169;UBERON:0000925!3.32e-11!169;UBERON:0006595!3.32e-11!169;UBERON:0002530!5.17e-11!59;UBERON:0000077!6.07e-11!130;UBERON:0000161!1.38e-10!35;UBERON:0005911!1.51e-09!82;UBERON:0004921!1.81e-09!129;UBERON:0004185!1.81e-09!129;UBERON:0001044!5.46e-09!6;UBERON:0003293!5.46e-09!6;UBERON:0003294!5.46e-09!6;UBERON:0010047!5.46e-09!6;UBERON:0000167!5.46e-09!6;UBERON:0003929!6.57e-09!54;UBERON:0003408!7.02e-09!10;UBERON:0001007!2.62e-08!155;UBERON:0001555!2.62e-08!155;UBERON:0007026!2.62e-08!155;UBERON:0001041!3.12e-08!98;UBERON:0000166!3.48e-08!21;UBERON:0002365!3.90e-08!31;UBERON:0002330!3.90e-08!31;UBERON:0003102!2.47e-07!95;UBERON:0001004!2.50e-07!72
|ontology_enrichment_uberon_v019=UBERON:0001044;5.23e-19;6!UBERON:0003293;5.23e-19;6!UBERON:0003294;5.23e-19;6!UBERON:0010047;5.23e-19;6!UBERON:0003408;5.23e-19;6!UBERON:0000167;5.23e-19;6!UBERON:0001829;3.57e-15;2!UBERON:0000165;1.34e-14;28!UBERON:0002365;9.34e-13;31!UBERON:0002330;9.34e-13;31!UBERON:0000161;1.32e-12;19!UBERON:0000166;1.32e-12;19!UBERON:0001041;2.07e-12;14!UBERON:0001723;4.48e-10;3!UBERON:0001033;4.48e-10;3!UBERON:0002423;5.35e-09;25!UBERON:0001736;1.77e-08;1!UBERON:0001831;2.12e-08;1!UBERON:0001567;2.12e-08;1!UBERON:0002372;2.90e-08;1!UBERON:0001961;2.90e-08;1!UBERON:0001744;2.90e-08;1!UBERON:0001042;2.90e-08;1!UBERON:0001735;2.90e-08;1!UBERON:0000998;8.40e-08;1!UBERON:0006868;8.40e-08;1!UBERON:0004175;1.34e-07;21!UBERON:0007811;2.68e-07;52!UBERON:0000153;3.50e-07;54!UBERON:0000033;4.57e-07;50
|ontology_enrichment_uberon_v019_2=UBERON:0001044,5.48e-19,6;UBERON:0003293,5.48e-19,6;UBERON:0003294,5.48e-19,6;UBERON:0010047,5.48e-19,6;UBERON:0000167,5.48e-19,6;UBERON:0000166,7.66e-19,22;UBERON:0001829,3.70e-15,2;UBERON:0001041,1.42e-14,87;UBERON:0000165,5.11e-14,29;UBERON:0000930,5.11e-14,29;UBERON:0002365,6.34e-13,31;UBERON:0002330,6.34e-13,31;UBERON:0003408,1.87e-11,10;UBERON:0000161,4.57e-11,36;UBERON:0001723,4.58e-10,3;UBERON:0001033,4.58e-10,3;UBERON:0010056,4.58e-10,3;UBERON:0001007,6.20e-10,145;UBERON:0001555,6.20e-10,145;UBERON:0007026,6.20e-10,145;UBERON:0004921,7.31e-10,118;UBERON:0001444,8.04e-10,49;UBERON:0000153,2.94e-09,62;UBERON:0007811,2.94e-09,62;UBERON:0009497,5.59e-09,25;UBERON:0000015,5.59e-09,25;UBERON:0002423,5.59e-09,25;UBERON:0006235,5.59e-09,25;UBERON:0004161,5.59e-09,25;UBERON:0004119,1.07e-08,160;UBERON:0000925,1.07e-08,160;UBERON:0006595,1.07e-08,160;UBERON:0001736,1.77e-08,1;UBERON:0006298,1.77e-08,1;UBERON:0000033,2.05e-08,56;UBERON:0001831,2.19e-08,1;UBERON:0001567,2.19e-08,1;UBERON:0008801,2.19e-08,1;UBERON:0002372,2.90e-08,1;UBERON:0001961,2.90e-08,1;UBERON:0001744,2.90e-08,1;UBERON:0001735,2.90e-08,1;UBERON:0000998,7.10e-08,1;UBERON:0006868,7.10e-08,1;UBERON:0002530,7.16e-08,59;UBERON:0001004,1.65e-07,74;UBERON:0008835,2.32e-07,22;UBERON:0003894,2.32e-07,22;UBERON:0009854,4.96e-07,23
|phase1_expression=0.181678379270557,0.428201047781966,0,0,1.78784437770915,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,1.09288586487763,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0,0,0.386521706326594,1.09098448236334,0,0.487894824518382,0.265059536642971,0.348581828608555,0.207322110030741,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0.184161977871793,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0.308097234229289,0,0,0,0,0,0,0,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14825409610731,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0.762760950878299,0.472775363535873,0,0,0,0,0,0,0,0,0,0,2.64905114129346,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,1.10939738410511,1.04135843001079,0.195984794828755,0,0,0.51595809741485,0,0.0730893170861856,0.0821154570532092,8.24406640151565,0,0.225980740780532,0,0,0,0,0,1.06726497369676,0,0,0.114536596165916,0,0,0,0.471388069233591,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,4.5926170114768,0,0,0.0671834724867263,0,0,2.04836273998782,0.741742725430498,1.75249214020881,1.37798474120648,0,0,0,0,0.275078873194468,0,0,0,0,0.670869375198532,0,0.0524545881349981,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,2.65013777824443,0,0,2.9084762440336,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,8.22386650285773,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.556157009460346,0.235479278551542,0,0,0,0.431855182437243,0,0,0,7.43945122356002,0,0,0,0.17071847709395,4.14755797088455,38.720462293825,0,0,1.69354820076372,0,0,0,0,0,10.9726132484042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,11.9269613685181,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.62497769231668,0,0.129177819672012,0.0620747142958579,0,0,0,6.96693593270276,2.39563310759697,5.18610808212324,1.93649954560226,0.665320713092027,0,0.106727345877715,0,0,7.03922827210363,0.122241444182866,0.813792356631477,0,0,0
|phase1_expression=0.181678379270557,0.428201047781966,0,0,1.78784437770915,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,1.09288586487763,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0,0,0.386521706326594,1.09098448236334,0,0.487894824518382,0.265059536642971,0.348581828608555,0.207322110030741,0,0,0,0.643240938192885,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0.184161977871793,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0.308097234229289,0,0,0,0,0,0,0,0,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14825409610731,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0.762760950878299,0.472775363535873,0,0,0,0,0,0,0,0,0,0,2.64905114129346,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,1.10939738410511,1.04135843001079,0.195984794828755,0,0,0.51595809741485,0,0.0730893170861856,0.0821154570532092,8.24406640151565,0,0.225980740780532,0,0,0,0,0,1.06726497369676,0,0,0.114536596165916,0,0,0,0.471388069233591,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,4.5926170114768,0,0,0.0671834724867263,0,0,2.04836273998782,0.741742725430498,1.75249214020881,1.37798474120648,0,0,0,0,0.275078873194468,0,0,0,0,0.670869375198532,0,0.0524545881349981,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,2.65013777824443,0,0,2.9084762440336,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,8.22386650285773,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.556157009460346,0.235479278551542,0,0,0,0.431855182437243,0,0,0,7.43945122356002,0,0,0,0.17071847709395,4.14755797088455,38.720462293825,0,0,1.69354820076372,0,0,0,0,0,10.9726132484042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,11.9269613685181,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.62497769231668,0,0.129177819672012,0.0620747142958579,0,0,0,6.96693593270276,2.39563310759697,5.18610808212324,1.93649954560226,0.665320713092027,0,0.106727345877715,0,0,7.03922827210363,0.122241444182866,0.813792356631477,0,0,0
|short_description=p4@VSIG10L
}}
}}

Latest revision as of 14:31, 19 September 2015

Short description:p4@VSIG10L
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_4_at_VSIG10L_5end
Coexpression cluster:C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea
Association with transcript: -71bp_to_ENST00000335624, ENST00000542561, NM_001163922, uc002pwf.2_5end
EntrezGene:VSIG10L
HGNC: 27111
UniProt: Q86VR7A2VDI5
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0
10
20
30
40




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data