FFCP PHASE1:Hg19::chr11:66139199..66139274,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3177 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11004 | |||
|TSSclassifier=strong | |||
|UniProt=Q14542,Q96FB2 | |||
|association_with_transcript=16bp_to_ENST00000357440,ENST00000540386,NM_001532,uc001oht.2_5end | |||
|cluster_id=chr11:66139199..66139274,- | |||
|description=CAGE_peak_1_at_SLC29A2_5end | |||
|id=chr11:66139199..66139274,- | |||
|ontology_enrichment_celltype=CL:0000066!4.83e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:1000507;5.72e-07;10!CL:1000494;5.72e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.37e-11,253;CL:1000507,5.64e-07,10;CL:1000494,5.64e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!5.21e-17!143;DOID:305!7.85e-17!106;DOID:162!8.50e-15!235;DOID:14566!1.95e-13!239;DOID:299!5.96e-09!25;DOID:0050686!9.48e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:299;3.87e-09;25!DOID:3095;5.91e-07;22!DOID:2994;5.91e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.45e-17,143;DOID:305,7.53e-17,106;DOID:162,2.62e-15,235;DOID:14566,4.19e-14,239;DOID:299,3.27e-09,25;DOID:0050686,3.37e-07,137;DOID:3095,6.64e-07,22;DOID:2994,6.64e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.43e-12!219;UBERON:0002346!8.90e-12!90;UBERON:0000481!8.85e-11!347;UBERON:0000924!2.19e-10!173;UBERON:0006601!2.19e-10!173;UBERON:0003075!3.07e-10!86;UBERON:0007284!3.07e-10!86;UBERON:0000073!1.72e-09!94;UBERON:0001016!1.72e-09!94;UBERON:0005177!3.14e-09!107;UBERON:0004121!3.54e-09!169;UBERON:0005743!4.81e-09!86;UBERON:0000063!9.66e-09!97;UBERON:0003056!1.20e-08!61;UBERON:0001049!3.40e-08!57;UBERON:0005068!3.40e-08!57;UBERON:0006241!3.40e-08!57;UBERON:0007135!3.40e-08!57;UBERON:0001017!4.31e-08!82;UBERON:0007023!7.62e-08!115;UBERON:0000153!8.71e-08!129;UBERON:0007811!8.71e-08!129;UBERON:0000033!1.19e-07!123;UBERON:0004119!1.52e-07!169;UBERON:0000925!1.52e-07!169;UBERON:0006595!1.52e-07!169;UBERON:0002616!2.52e-07!59;UBERON:0000464!3.51e-07!104;UBERON:0004921!3.70e-07!129;UBERON:0004185!3.70e-07!129;UBERON:0001007!9.05e-07!155;UBERON:0001555!9.05e-07!155;UBERON:0007026!9.05e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.72e-07;10!UBERON:0009773;5.72e-07;10!UBERON:0001231;5.72e-07;10!UBERON:0004810;5.72e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,2.50e-11,223;UBERON:0002346,1.10e-10,86;UBERON:0005177,3.64e-09,101;UBERON:0003075,3.67e-09,82;UBERON:0007284,3.67e-09,82;UBERON:0004121,8.24e-09,171;UBERON:0000924,8.24e-09,171;UBERON:0006601,8.24e-09,171;UBERON:0001016,3.29e-08,89;UBERON:0003056,7.79e-08,61;UBERON:0001049,8.04e-08,56;UBERON:0005068,8.04e-08,56;UBERON:0006241,8.04e-08,56;UBERON:0007135,8.04e-08,56;UBERON:0001017,8.77e-08,81;UBERON:0000073,1.17e-07,53;UBERON:0002616,1.17e-07,53;UBERON:0010371,2.84e-07,104;UBERON:0007023,3.76e-07,114;UBERON:0004810,5.64e-07,10 | |||
|phase1_expression=0.726713517082227,18.6267455785155,2.39622486963151,2.00146596706261,2.68176656656373,0,5.06599756336621,1.26343974685366,5.74608382039645,11.7952289520724,62.8021051175185,2.83973783769224,4.22027165165526,1.11389717664042,2.31978163009541,0,0,0,0,2.70866327768933,3.4680117511523,2.82109249330279,7.44213566540748,9.17058647988324,15.8183725889452,7.33568695180332,5.09023654589664,7.16268109954481,0,0,0,5.51652734687356,4.2168828628955,2.21852406100073,4.02829443017569,19.4771848507767,7.63361142270603,0,0,0,0.447830948479849,0.647787332037959,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,1.77901850772711,0.426730222566507,1.60158394814405,1.14950487990897,2.64417949113945,1.90810750907073,2.27685187643779,2.93618594685469,1.14681968437569,1.32171328579026,1.12101712596307,7.63813845847723,0.196709770113833,1.57204305099666,0.205601498999509,2.67498392625085,1.62961133316795,1.89379122293893,5.84480185223734,0.668462741311041,0.589211814949674,1.32920336750173,0.541607727530031,0.640456598628376,1.69077151827842,1.97325485524411,1.38175008892924,1.73881851441031,4.59688345802387,2.1403266247177,1.04535523804977,1.35971211237079,1.14966148080576,1.37450978193052,1.77113784413652,1.27426165729639,2.60433381542567,0,2.55977702432214,1.27986611154418,4.99722906209383,1.4206635122641,0.821127996921047,1.00803371612366,1.06976078313403,1.73789284659359,0,0,1.40648818027883,0,0,0,0,0,9.64255135073492,16.8514342071549,12.4725395684239,3.33996642519167,8.01449634243593,1.85392221392215,0,0.174129737299267,0.398873881556595,0.953962497221368,0,0,1.19257444420023,0,2.08284300964557,0.56530794192401,0,0.275118041940067,0.208994966536811,1.55050055501597,1.42306505074684,0.33472061276467,0.805658634218294,0.760272105718513,2.68468263302986,0.367663080345869,0,5.09008451219255,7.85852804191594,6.30624290706604,0,1.89853131913626,1.64881569537367,0,0,3.92484646928281,0,0.12663051166458,0.132409180813219,0,0,0,1.06748995729705,1.72667283892012,1.24484414159907,1.61652806483626,1.47115712802113,3.32986340818849,0,2.81185718200556,6.24320153660641,0.570471821544449,1.19558944441441,9.98193238472001,4.37056949793955,4.9157782345787,2.04154171254893,9.70391106762967,1.13658359293342,0,0.247266929278557,3.64064544775211,4.31170885089743,1.5150250255866,7.50711119231785,1.38532057742091,0.438977620880838,0.30648779579902,0.150238058906597,0.340296549480063,0.358779271377724,0.213557388818567,0,0,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0.0920498986422993,0,0,0.10075209822764,0,0.966304265816484,1.36373060295417,3.15485054927904,22.6871093401047,23.8553582978673,18.9396126877315,13.4759371519982,20.1856680700503,16.4239811584123,1.56449532329816,1.28648187638577,0,0.464367928031979,0.721879481669586,4.8505788016336,3.54027849164014,5.54325368732009,5.29411069115491,4.13970943775572,5.21995362044413,5.66291494272691,5.29797955838434,3.8474715694639,2.95262181849859,2.80483547606892,3.2925920906512,8.82052268313252,0,0,1.18157981336281,1.32438929824395,14.1436704324581,10.9803398591056,3.84125998930189,3.37205259772859,4.62433273093502,5.74048359982883,0.325808305310325,1.03993478527958,17.3197610430328,12.5204837373083,5.4007999348478,1.87676382089396,1.38895653772983,0.951270761172991,11.0628615714299,17.1697232418975,0.738651018262192,0,0.891786973732369,0.93733833986777,1.51183915378974,0.850650583454319,0.447792613514241,3.48760726216754,3.06706143332169,0,0.088048434013226,0,0.144119953416961,0.12624243342638,2.47641787739459,3.4378958300245,4.68869788840188,6.84289784090821,3.70178973731965,0.600686115687835,1.14330573052231,4.70950554250515,9.15516144549888,2.56684000373325,0.517086863031111,10.7296933755565,0,0.26593811658487,0,3.34369586540785,2.83698264046557,1.8649552531127,6.0050757336422,0.542621605391443,0.823240336780769,0.325736184293735,4.26470338491055,0.791951872933429,0.301439377059586,0,0.599837947092342,1.2162378064119,1.00451418286425,0,0.239624855491583,2.29723871668228,1.42636905040718,0.144781306667579,0.205476322550383,0.179060963239896,0.112085143993527,1.18218456121156,0.431255149719035,0.513372145118994,2.54094624222463,7.8083912314573,8.50617694055465,4.52293916402742,7.01732626818479,0,0,0,1.71768088406796,3.00102312635806,3.7977103317963,0.623912584592421,0.356857977594324,2.05013139544115,1.99140405487612,0.902838299183157,0,1.03473071292505,0,0.737476674166813,3.64911180765948,13.7060810223918,4.46086450954113,1.24060815673732,0.862856803274467,1.70764092485511,0,6.65741758041988,2.72151263996712,0,0.306923946576125,0.561320188866147,0.256278298511402,0.511707249066704,0,0,0.616838775210622,0.887808626565635,0.0821271560138091,0,0,13.0528205558952,2.00506470303285,1.65745780084613,0,0.546273504020151,1.04899531967539,37.9007674842226,27.0323833236496,60.3949322266179,20.4594914514565,21.4269806652538,2.27466768141793,2.55140557914773,0,4.626817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| |||
|short_description=p1@SLC29A2 | |||
}} |
Latest revision as of 14:20, 19 September 2015
Short description: | p1@SLC29A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC29A2_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000357440, ENST00000540386, NM_001532, uc001oht.2_5end |
EntrezGene: | SLC29A2 |
HGNC: | 11004 |
UniProt: | Q14542Q96FB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.37e-11 | 253 |
kidney tubule cell | 5.64e-07 | 10 |
nephron tubule epithelial cell | 5.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 2.50e-11 | 223 |
neurectoderm | 1.10e-10 | 86 |
trunk region element | 3.64e-09 | 101 |
neural plate | 3.67e-09 | 82 |
presumptive neural plate | 3.67e-09 | 82 |
ectoderm-derived structure | 8.24e-09 | 171 |
ectoderm | 8.24e-09 | 171 |
presumptive ectoderm | 8.24e-09 | 171 |
nervous system | 3.29e-08 | 89 |
pre-chordal neural plate | 7.79e-08 | 61 |
neural tube | 8.04e-08 | 56 |
neural rod | 8.04e-08 | 56 |
future spinal cord | 8.04e-08 | 56 |
neural keel | 8.04e-08 | 56 |
central nervous system | 8.77e-08 | 81 |
regional part of nervous system | 1.17e-07 | 53 |
regional part of brain | 1.17e-07 | 53 |
ecto-epithelium | 2.84e-07 | 104 |
adult organism | 3.76e-07 | 114 |
nephron tubule epithelium | 5.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.45e-17 | 143 |
carcinoma | 7.53e-17 | 106 |
cancer | 2.62e-15 | 235 |
disease of cellular proliferation | 4.19e-14 | 239 |
adenocarcinoma | 3.27e-09 | 25 |
organ system cancer | 3.37e-07 | 137 |
germ cell and embryonal cancer | 6.64e-07 | 22 |
germ cell cancer | 6.64e-07 | 22 |