FFCP PHASE1:Hg19::chr19:51538121..51538134,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=43849 | |EntrezGene=43849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6360 | |HGNC=6360 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKR2,E9PPC6,E9PR22 | |UniProt=Q9UKR2,E9PPC6,E9PR22 | ||
|association_with_transcript=-3bp_to_ENST00000529888,ENST00000530943,ENST00000531374,uc010ycp.1,uc010ycq.1,uc010ycr.1,uc010ycs.1_5end | |association_with_transcript=-3bp_to_ENST00000529888,ENST00000530943,ENST00000531374,uc010ycp.1,uc010ycq.1,uc010ycr.1,uc010ycs.1_5end | ||
|cluster_id=chr19:51538121..51538134,- | |||
|coexpression_cluster_id=C94 | |coexpression_cluster_id=C94 | ||
|description=CAGE_peak_4_at_KLK12_5end | |description=CAGE_peak_4_at_KLK12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000575!2.55e-13!2;CL:0000622!2.46e-11!5;CL:0000154!1.59e-09!6;CL:0002623!6.59e-09!3;CL:0002159!1.64e-07!13 | |ontology_enrichment_celltype=CL:0000575!2.55e-13!2;CL:0000622!2.46e-11!5;CL:0000154!1.59e-09!6;CL:0002623!6.59e-09!3;CL:0002159!1.64e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000575;2.04e-36;2 | |ontology_enrichment_celltype_v019=CL:0000575;2.04e-36;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000575,2.45e-36,2 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.30e-19;1!UBERON:0008814;2.99e-10;2!UBERON:0010056;2.99e-10;2 | |ontology_enrichment_development_v019=UBERON:0009143;1.30e-19;1!UBERON:0008814;2.99e-10;2!UBERON:0010056;2.99e-10;2 | ||
|ontology_enrichment_disease=DOID:5093!5.52e-07!4;DOID:1612!5.52e-07!4 | |ontology_enrichment_disease=DOID:5093!5.52e-07!4;DOID:1612!5.52e-07!4 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!4.84e-13!21;UBERON:0003127!6.32e-13!2;UBERON:0000078!1.81e-11!18;UBERON:0001042!1.09e-09!10;UBERON:0009145!1.09e-09!10;UBERON:0000002!1.37e-09!6;UBERON:0001560!1.37e-09!6;UBERON:0000165!1.46e-09!28;UBERON:0000930!1.46e-09!28;UBERON:0003408!1.64e-09!10;UBERON:0001004!1.67e-09!72;UBERON:0001044!1.89e-09!6;UBERON:0003293!1.89e-09!6;UBERON:0003294!1.89e-09!6;UBERON:0010047!1.89e-09!6;UBERON:0000167!1.89e-09!6;UBERON:0001723!6.09e-09!3;UBERON:0001033!6.09e-09!3;UBERON:0010056!6.09e-09!3;UBERON:0006562!8.08e-09!11;UBERON:0001444!1.27e-08!48;UBERON:0004921!2.64e-08!129;UBERON:0004185!2.64e-08!129;UBERON:0002372!1.36e-07!1;UBERON:0001961!1.36e-07!1;UBERON:0001744!1.36e-07!1;UBERON:0001735!1.36e-07!1;UBERON:0000161!1.78e-07!35;UBERON:0004119!1.83e-07!169;UBERON:0000925!1.83e-07!169;UBERON:0006595!1.83e-07!169;UBERON:0001007!2.22e-07!155;UBERON:0001555!2.22e-07!155;UBERON:0007026!2.22e-07!155;UBERON:0000072!4.02e-07!46;UBERON:0000964!4.48e-07!4;UBERON:0004348!4.48e-07!4;UBERON:0005427!4.48e-07!4 | |ontology_enrichment_uberon=UBERON:0000166!4.84e-13!21;UBERON:0003127!6.32e-13!2;UBERON:0000078!1.81e-11!18;UBERON:0001042!1.09e-09!10;UBERON:0009145!1.09e-09!10;UBERON:0000002!1.37e-09!6;UBERON:0001560!1.37e-09!6;UBERON:0000165!1.46e-09!28;UBERON:0000930!1.46e-09!28;UBERON:0003408!1.64e-09!10;UBERON:0001004!1.67e-09!72;UBERON:0001044!1.89e-09!6;UBERON:0003293!1.89e-09!6;UBERON:0003294!1.89e-09!6;UBERON:0010047!1.89e-09!6;UBERON:0000167!1.89e-09!6;UBERON:0001723!6.09e-09!3;UBERON:0001033!6.09e-09!3;UBERON:0010056!6.09e-09!3;UBERON:0006562!8.08e-09!11;UBERON:0001444!1.27e-08!48;UBERON:0004921!2.64e-08!129;UBERON:0004185!2.64e-08!129;UBERON:0002372!1.36e-07!1;UBERON:0001961!1.36e-07!1;UBERON:0001744!1.36e-07!1;UBERON:0001735!1.36e-07!1;UBERON:0000161!1.78e-07!35;UBERON:0004119!1.83e-07!169;UBERON:0000925!1.83e-07!169;UBERON:0006595!1.83e-07!169;UBERON:0001007!2.22e-07!155;UBERON:0001555!2.22e-07!155;UBERON:0007026!2.22e-07!155;UBERON:0000072!4.02e-07!46;UBERON:0000964!4.48e-07!4;UBERON:0004348!4.48e-07!4;UBERON:0005427!4.48e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002372;1.88e-19;1!UBERON:0005795;1.88e-19;1!UBERON:0001961;1.88e-19;1!UBERON:0001744;1.88e-19;1!UBERON:0001042;1.88e-19;1!UBERON:0001735;1.88e-19;1!UBERON:0000964;8.88e-19;4!UBERON:0010409;8.88e-19;4!UBERON:0006562;2.07e-10;2!UBERON:0003127;2.99e-10;2!UBERON:0000341;2.99e-10;2!UBERON:0010313;4.34e-08;10!UBERON:0000020;1.33e-07;23!UBERON:0001043;2.05e-07;3!UBERON:0001032;2.62e-07;24!UBERON:0004456;2.62e-07;24!UBERON:0001723;2.97e-07;3!UBERON:0001033;2.97e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0002372;1.88e-19;1!UBERON:0005795;1.88e-19;1!UBERON:0001961;1.88e-19;1!UBERON:0001744;1.88e-19;1!UBERON:0001042;1.88e-19;1!UBERON:0001735;1.88e-19;1!UBERON:0000964;8.88e-19;4!UBERON:0010409;8.88e-19;4!UBERON:0006562;2.07e-10;2!UBERON:0003127;2.99e-10;2!UBERON:0000341;2.99e-10;2!UBERON:0010313;4.34e-08;10!UBERON:0000020;1.33e-07;23!UBERON:0001043;2.05e-07;3!UBERON:0001032;2.62e-07;24!UBERON:0004456;2.62e-07;24!UBERON:0001723;2.97e-07;3!UBERON:0001033;2.97e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.25e-19,1;UBERON:0001961,2.25e-19,1;UBERON:0001744,2.25e-19,1;UBERON:0001735,2.25e-19,1;UBERON:0000964,9.72e-19,4;UBERON:0010409,9.72e-19,4;UBERON:0004348,9.72e-19,4;UBERON:0005427,9.72e-19,4;UBERON:0000341,2.49e-10,2;UBERON:0003127,3.27e-10,2;UBERON:0001042,3.90e-08,10;UBERON:0009145,3.90e-08,10;UBERON:0010313,4.50e-08,10;UBERON:0002342,4.50e-08,10;UBERON:0005062,4.50e-08,10;UBERON:0006562,1.78e-07,11;UBERON:0001043,2.05e-07,3;UBERON:0009143,2.05e-07,3;UBERON:0000020,2.68e-07,24;UBERON:0001032,2.68e-07,24;UBERON:0004456,2.68e-07,24;UBERON:0000153,2.75e-07,62;UBERON:0007811,2.75e-07,62;UBERON:0001723,2.97e-07,3;UBERON:0001033,2.97e-07,3;UBERON:0010056,2.97e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83654246567162,2.15460723810632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78257164304836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51215543128185,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0,4.07599677630019,0.463044948647668,0,6.58444214906132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,0,0.0645889098360061,0,0,0,0,1.30630048738177,0.342233301085281,2.02056159043763,1.29099969706817,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83654246567162,2.15460723810632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78257164304836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51215543128185,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0,4.07599677630019,0.463044948647668,0,6.58444214906132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,0,0.0645889098360061,0,0,0,0,1.30630048738177,0.342233301085281,2.02056159043763,1.29099969706817,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0 | ||
|short_description=p4@KLK12 | |short_description=p4@KLK12 | ||
}} | }} |
Latest revision as of 14:08, 19 September 2015
Short description: | p4@KLK12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KLK12_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | -3bp_to_ENST00000529888, ENST00000530943, ENST00000531374, uc010ycp.1, uc010ycq.1, uc010ycr.1, uc010ycs.1_5end |
EntrezGene: | KLK12 |
HGNC: | 6360 |
UniProt: | Q9UKR2E9PPC6E9PR22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 2.45e-36 | 2 |
Ontology term | p-value | n |
---|---|---|
tonsil | 2.25e-19 | 1 |
mucosa-associated lymphoid tissue | 2.25e-19 | 1 |
lymphoid tissue | 2.25e-19 | 1 |
tonsillar ring | 2.25e-19 | 1 |
cornea | 9.72e-19 | 4 |
eye surface | 9.72e-19 | 4 |
optic eminence | 9.72e-19 | 4 |
corneal primordium | 9.72e-19 | 4 |
throat | 2.49e-10 | 2 |
open tracheal system trachea | 3.27e-10 | 2 |
chordate pharynx | 3.90e-08 | 10 |
pharyngeal region of foregut | 3.90e-08 | 10 |
neural crest-derived structure | 4.50e-08 | 10 |
neural crest | 4.50e-08 | 10 |
neural fold | 4.50e-08 | 10 |
pharynx | 1.78e-07 | 11 |
esophagus | 2.05e-07 | 3 |
esophageal region | 2.05e-07 | 3 |
sense organ | 2.68e-07 | 24 |
sensory system | 2.68e-07 | 24 |
entire sense organ system | 2.68e-07 | 24 |
anterior region of body | 2.75e-07 | 62 |
craniocervical region | 2.75e-07 | 62 |
tongue | 2.97e-07 | 3 |
gustatory system | 2.97e-07 | 3 |
future tongue | 2.97e-07 | 3 |