FFCP PHASE1:Hg19::chr7:76139713..76139729,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80761 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21444 | |||
|TSSclassifier=strong | |||
|UniProt=A6NHH5,Q9BT76 | |||
|association_with_transcript=-15bp_to_ENST00000334348,ENST00000419923,ENST00000443097,ENST00000448265,NM_030570,NM_182684,uc003ufo.2,uc003ufq.2,uc010ldk.1_5end | |||
|cluster_id=chr7:76139713..76139729,+ | |||
|coexpression_cluster_id=C1193 | |||
|description=CAGE_peak_3_at_UPK3B_5end | |||
|id=chr7:76139713..76139729,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.83e-26!254;CL:0002076!6.43e-13!43;CL:0000077!3.94e-10!19;CL:0000223!1.25e-09!59;CL:0000076!2.06e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000077;5.86e-11;19!CL:0002586;1.49e-09;3!CL:0000149;3.07e-07;4!CL:0000244;4.01e-07;4!CL:0000731;4.01e-07;4!CL:0002251;8.04e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.20e-16,253;CL:0000077,5.70e-11,19;CL:0002586,1.51e-09,3;CL:0000076,2.06e-08,63;CL:0002076,1.78e-07,42;CL:0000149,3.10e-07,4;CL:0000244,3.74e-07,4;CL:0000731,3.74e-07,4;CL:0002251,7.73e-07,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!6.27e-21!106;DOID:0050687!7.20e-15!143;DOID:299!1.66e-10!25;DOID:162!2.73e-10!235;DOID:14566!1.21e-09!239 | |||
|ontology_enrichment_disease_v019=DOID:299;3.70e-15;25 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.93e-15,25;DOID:305,1.60e-14,106;DOID:0050687,1.13e-09,143;DOID:162,2.94e-07,235;DOID:14566,6.30e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.58e-17!169;UBERON:0000925!7.58e-17!169;UBERON:0006595!7.58e-17!169;UBERON:0004921!2.18e-13!129;UBERON:0004185!2.18e-13!129;UBERON:0000077!2.72e-13!130;UBERON:0001007!5.78e-13!155;UBERON:0001555!5.78e-13!155;UBERON:0007026!5.78e-13!155;UBERON:0000065!9.26e-12!53;UBERON:0001041!2.44e-10!98;UBERON:0001004!2.59e-10!72;UBERON:0008947!3.04e-10!38;UBERON:0003258!3.04e-10!38;UBERON:0000464!2.29e-09!104;UBERON:0000063!1.58e-08!97;UBERON:0000466!5.98e-08!126;UBERON:0004458!1.09e-07!49;UBERON:0000072!1.19e-07!46;UBERON:0005911!2.58e-07!82;UBERON:0005181!3.00e-07!35;UBERON:0000064!3.32e-07!219;UBERON:0002323!3.98e-07!46;UBERON:0005409!4.73e-07!35;UBERON:0005177!7.55e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;1.49e-09;3!UBERON:0001782;1.49e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.51e-09,3;UBERON:0005424,1.51e-09,3;UBERON:0001781,3.10e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,2.79120467188971,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0.464448369948228,0.919421224478927,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.263504357079378,4.91171533116422,3.27865759463288,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,2.29443676311203,0.121973706129595,0.132529768321485,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0.842923450390509,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0.269662616320329,0.392442930250692,0,0,0,4.5273141246454,0,0,0,0,0,1.47586126251736,0,0.329250856225877,0,1.10581869652794,0,0,0,0,0,0,0,0,0,2.37061319387782,1.71697232418975,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7705294759197,8.71533458600294,50.5863335381209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0.40101294060657,0.184161977871793,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,20.7724601344275,24.6010984274779,4.22991913063594,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,0.127612712494584,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,1.63577591633371,2.01090682660736,0,0.188287601553558,7.74909670808214,0,13.7463347596369,5.97280840538095,0,0,0,0,0,0,0,0,0.854592569019785,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.852408440419239,3.81991175580304,20.1935982966194,46.6884267190833,0,0,0,0,0,0.996239941255349,0.828851746593443,0,0.20453736500431,0,0,2.24670877868317,0.716084698702437,0,0.197286811273867,0,0,0,0,0,0,0,0,1.365521379426,0,9.69189495248539,0,0,0,0,0,0,0,0,0.219385397153973,0.21787692703798,1.95193241990045,0,0,0,0,0,0.957003479195758,0,0,0,0,0,0,0,0,0,0,0,60.3961390188847,1.55488378577335,0,0,0.530745387020035,0,0,0,0,0.067401132980677,2.40773294189637,0,0,5.47860933009851,0.242780379534093,0,0,0,0.063186579628488,0,0,0.664653872707185,0.330991955875499,1.2557316736289,0,1.99226682220855,0,19.9593699085401,5.48757425520515,0.609414446062818,0.17472666824203,0.171986032471617,0.870806981601766,0.803982487948041,1.14961639874493,0.775912131907355,0.441280633457501,0,0,0,0,1.17330829640882,1.84365286578528,0.640358984218058,1.39866726707491,3.16998917739033,0.229073192331831,0,0,0,0.707082103850386,3.94122197613481,3.55649677461933,0,0,0,0,0,0.429765441419957,0,0,0,0,11.9807400299395,0.858452096273142,0.223171457441873,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0.482259445395058,0.137539436597234,0,0,0,0,2.0126081255956,0,0.104909176269996,0,0,0.383830394638891,0,0,4.068296602476,0,0,0,0,0,0,0,0,0,0,0,2.22412889249628,0.704815022316672,10.2515916064987,1.72924735609633,2.48543433208317,0,0,0,0,0,0,0,0,0,0,0,0,3.44045517414043,1.33114861844223,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0.450772826991655,3.04644169735036,0.406870733204662,0,0.644463342254931,0,0,0,0,0,0,0.57785949122191,9.64987161187166,7.04684588306071,0.226705925512272,0,0.244736704506468,0,35.5121664235118,26.0948018998661,0,32.2166443912428,2.53413660979609,0.256241518587947,0.345430341731199,0,0,0,0,0,0,0.245772908753719,1.47918486351039,0,0,0,0,0,0.139879507719444,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,4.41664733254615,0,1.83428598521679,0.346576998451015,0,0,0,1.5794168953344,0,0,0,0,1.18284868973636,0.0675375846183947,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,0.0887023701626388,0,0,0,0,5.2005289988946,0.111231401892069,0,0,0,0.913158720509496,7.12561051021451,0,0.571812353413251,0,0.581207126840626,0,0,0,0,0,0,0,0,0,7.10231292486555,0,0,90.0436225972228,0.098150233615243,21.5794727218617,0,0,0,0,0,0,0,0,0,0,0,0.655678681511872,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.535661815816973,0,0.0802413666891683,0.730336388246517,0,0,0.315543124386369,0,0,0.5290268405154,0,0,0,0,0,0,0.509944148709909,0.26721740526556,0,0,1.13668047327359,0.267964130156178,0,0,0.639701945702943,0,0,0.0620747142958579,0,0,0,0,1.02669990325584,1.14498490124799,0.215166616178029,0,0.569822880276821,0.106727345877715,0,0.538951212639521,7.03922827210363,0,0.406896178315738,0,1.40891655513718,0 | |||
|short_description=p3@UPK3B | |||
}} |
Latest revision as of 14:05, 19 September 2015
Short description: | p3@UPK3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_UPK3B_5end |
Coexpression cluster: | C1193_mesothelioma_Mesothelial_Retinal_clear_amniotic_serous_Urothelial |
Association with transcript: | -15bp_to_ENST00000334348, ENST00000419923, ENST00000443097, ENST00000448265, NM_030570, NM_182684, uc003ufo.2, uc003ufq.2, uc010ldk.1_5end |
EntrezGene: | UPK3B |
HGNC: | 21444 |
UniProt: | A6NHH5Q9BT76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.20e-16 | 253 |
mesothelial cell | 5.70e-11 | 19 |
retinal pigment epithelial cell | 1.51e-09 | 3 |
squamous epithelial cell | 2.06e-08 | 63 |
endo-epithelial cell | 1.78e-07 | 42 |
visual pigment cell | 3.10e-07 | 4 |
transitional epithelial cell | 3.74e-07 | 4 |
urothelial cell | 3.74e-07 | 4 |
epithelial cell of alimentary canal | 7.73e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.51e-09 | 3 |
presumptive retinal pigmented epithelium | 1.51e-09 | 3 |
layer of retina | 3.10e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.93e-15 | 25 |
carcinoma | 1.60e-14 | 106 |
cell type cancer | 1.13e-09 | 143 |
cancer | 2.94e-07 | 235 |
disease of cellular proliferation | 6.30e-07 | 239 |