FFCP PHASE1:Hg19::chr6:105405563..105405584,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389421 | |EntrezGene=389421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=32207 | |HGNC=32207 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-389bp_to_uc010kda.1_5end | |association_with_transcript=-389bp_to_uc010kda.1_5end | ||
|cluster_id=chr6:105405563..105405584,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_4_at_LIN28B_5end | |description=CAGE_peak_4_at_LIN28B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!6.73e-19!5;CL:0000039!2.78e-08!7;CL:0000586!2.78e-08!7 | |ontology_enrichment_celltype=CL:0002322!6.73e-19!5;CL:0000039!2.78e-08!7;CL:0000586!2.78e-08!7 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.80e-36;5!CL:0000039;8.31e-16;7!CL:0000586;8.31e-16;7!CL:0002321;5.47e-12;15!CL:0000540;2.18e-11;6!CL:0000404;2.18e-11;6!CL:0000148;4.75e-07;10 | |ontology_enrichment_celltype_v019=CL:0002322;2.80e-36;5!CL:0000039;8.31e-16;7!CL:0000586;8.31e-16;7!CL:0002321;5.47e-12;15!CL:0000540;2.18e-11;6!CL:0000404;2.18e-11;6!CL:0000148;4.75e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.43e-36,5;CL:0000039,8.16e-16,7;CL:0000586,8.16e-16,7;CL:0000540,2.38e-11,6;CL:0000031,2.38e-11,6;CL:0000404,2.38e-11,6;CL:0000047,1.25e-08,8;CL:0000148,4.56e-07,10;CL:0000541,4.56e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.24e-17;10!UBERON:0005564;6.24e-17;10!CL:0000031;2.18e-11;6 | |ontology_enrichment_development_v019=UBERON:0009117;6.24e-17;10!UBERON:0005564;6.24e-17;10!CL:0000031;2.18e-11;6 | ||
|ontology_enrichment_disease=DOID:1036!2.65e-15!8;DOID:14566!4.32e-15!239;DOID:162!1.17e-14!235;DOID:3095!2.19e-13!22;DOID:2994!2.19e-13!22;DOID:1240!6.28e-10!39;DOID:0050687!6.75e-10!143;DOID:2531!9.07e-10!51;DOID:0060083!9.07e-10!51;DOID:8692!5.47e-09!31;DOID:74!1.07e-07!2;DOID:305!9.88e-07!106 | |ontology_enrichment_disease=DOID:1036!2.65e-15!8;DOID:14566!4.32e-15!239;DOID:162!1.17e-14!235;DOID:3095!2.19e-13!22;DOID:2994!2.19e-13!22;DOID:1240!6.28e-10!39;DOID:0050687!6.75e-10!143;DOID:2531!9.07e-10!51;DOID:0060083!9.07e-10!51;DOID:8692!5.47e-09!31;DOID:74!1.07e-07!2;DOID:305!9.88e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.74e-21;8!DOID:3095;1.06e-10;22!DOID:2994;1.06e-10;22!DOID:9119;5.43e-08;1!DOID:2355;5.43e-08;1 | |ontology_enrichment_disease_v019=DOID:1036;1.74e-21;8!DOID:3095;1.06e-10;22!DOID:2994;1.06e-10;22!DOID:9119;5.43e-08;1!DOID:2355;5.43e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,1.81e-21,8;DOID:3095,1.02e-10,22;DOID:2994,1.02e-10,22;DOID:2355,4.41e-08,1;DOID:9119,6.24e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.05e-07!8 | |ontology_enrichment_uberon=UBERON:0000473!3.05e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.40e-14;8!UBERON:0003135;4.00e-10;11!UBERON:0000991;5.69e-08;21!UBERON:0000922;6.95e-08;49 | |ontology_enrichment_uberon_v019=UBERON:0000473;7.40e-14;8!UBERON:0003135;4.00e-10;11!UBERON:0000991;5.69e-08;21!UBERON:0000922;6.95e-08;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.28e-14,8;UBERON:0003135,3.95e-10,11;UBERON:0000991,5.44e-08,21;UBERON:0009196,5.44e-08,21;UBERON:0009117,5.44e-08,21;UBERON:0005564,5.44e-08,21;UBERON:0004176,1.28e-07,22 | |||
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| ||
|short_description=p4@LIN28B | |short_description=p4@LIN28B | ||
}} | }} |
Latest revision as of 13:56, 19 September 2015
Short description: | p4@LIN28B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIN28B_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -389bp_to_uc010kda.1_5end |
EntrezGene: | LIN28B |
HGNC: | 32207 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.43e-36 | 5 |
germ line cell | 8.16e-16 | 7 |
germ cell | 8.16e-16 | 7 |
neuron | 2.38e-11 | 6 |
neuroblast | 2.38e-11 | 6 |
electrically signaling cell | 2.38e-11 | 6 |
neuronal stem cell | 1.25e-08 | 8 |
melanocyte | 4.56e-07 | 10 |
melanoblast | 4.56e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 7.28e-14 | 8 |
male reproductive organ | 3.95e-10 | 11 |
gonad | 5.44e-08 | 21 |
indifferent external genitalia | 5.44e-08 | 21 |
indifferent gonad | 5.44e-08 | 21 |
gonad primordium | 5.44e-08 | 21 |
external genitalia | 1.28e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.81e-21 | 8 |
germ cell and embryonal cancer | 1.02e-10 | 22 |
germ cell cancer | 1.02e-10 | 22 |
anemia | 4.41e-08 | 1 |
acute myeloid leukemia | 6.24e-08 | 1 |