FFCP PHASE1:Hg19::chr14:24553835..24553850,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4901 | |EntrezGene=4901 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8002 | |HGNC=8002 | ||
|TSSclassifier=strong | |||
|UniProt=P54845 | |UniProt=P54845 | ||
|association_with_transcript=-1bp_to_ENST00000397002_5end | |association_with_transcript=-1bp_to_ENST00000397002_5end | ||
|cluster_id=chr14:24553835..24553850,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_1_at_NRL_5end | |description=CAGE_peak_1_at_NRL_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000946!4.60e-07!1;CL:0000786!4.60e-07!1;CL:0000980!4.60e-07!1 | |ontology_enrichment_celltype=CL:0000946!4.60e-07!1;CL:0000786!4.60e-07!1;CL:0000980!4.60e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000306;8.37e-07;4!CL:0002222;8.37e-07;4!CL:0002224;8.37e-07;4 | |ontology_enrichment_celltype_v019=CL:0000306;8.37e-07;4!CL:0002222;8.37e-07;4!CL:0002224;8.37e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000306,8.14e-07,4;CL:0002222,8.14e-07,4;CL:0002224,8.14e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.47e-30;3!UBERON:0007297;2.45e-12;2!UBERON:0006238;4.80e-09;10 | |ontology_enrichment_development_v019=UBERON:0003056;1.47e-30;3!UBERON:0007297;2.45e-12;2!UBERON:0006238;4.80e-09;10 | ||
|ontology_enrichment_disease=DOID:1036!2.78e-07!8 | |ontology_enrichment_disease=DOID:1036!2.78e-07!8 | ||
|ontology_enrichment_disease_v019=DOID:3093;2.29e-08;11!DOID:5409;9.11e-07;4 | |ontology_enrichment_disease_v019=DOID:3093;2.29e-08;11!DOID:5409;9.11e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,2.29e-08,11;DOID:5409,9.11e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!7.30e-12!5;UBERON:0005388!7.30e-12!5;UBERON:0001802!7.30e-12!5;UBERON:0000970!1.37e-10!20;UBERON:0002104!4.67e-10!21;UBERON:0000020!3.95e-09!23;UBERON:0001032!1.00e-08!24;UBERON:0004456!1.00e-08!24;UBERON:0000019!6.96e-08!19;UBERON:0000047!6.96e-08!19;UBERON:0004088!6.96e-08!19;UBERON:0003072!6.96e-08!19;UBERON:0003071!6.96e-08!19;UBERON:0004128!6.96e-08!19;UBERON:0001301!1.36e-07!1;UBERON:0001456!4.17e-07!21 | |ontology_enrichment_uberon=UBERON:0000966!7.30e-12!5;UBERON:0005388!7.30e-12!5;UBERON:0001802!7.30e-12!5;UBERON:0000970!1.37e-10!20;UBERON:0002104!4.67e-10!21;UBERON:0000020!3.95e-09!23;UBERON:0001032!1.00e-08!24;UBERON:0004456!1.00e-08!24;UBERON:0000019!6.96e-08!19;UBERON:0000047!6.96e-08!19;UBERON:0004088!6.96e-08!19;UBERON:0003072!6.96e-08!19;UBERON:0003071!6.96e-08!19;UBERON:0004128!6.96e-08!19;UBERON:0001301!1.36e-07!1;UBERON:0001456!4.17e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.93e-23;1!UBERON:0000966;8.66e-19;5!UBERON:0005388;8.66e-19;5!UBERON:0001802;8.66e-19;5!UBERON:0000970;3.49e-18;20!UBERON:0002104;2.43e-17;21!UBERON:0000020;7.11e-16;23!UBERON:0001032;3.12e-15;24!UBERON:0004456;3.12e-15;24!UBERON:0001905;3.62e-12;2!UBERON:0002757;3.62e-12;2!UBERON:0010134;3.62e-12;2!UBERON:0005408;3.62e-12;2!UBERON:0001899;3.62e-12;2!UBERON:0000019;3.48e-11;19!UBERON:0000047;3.48e-11;19!UBERON:0004088;3.48e-11;19!UBERON:0010230;3.48e-11;19!UBERON:0001456;3.51e-10;21!UBERON:0006947;1.17e-08;3!UBERON:0004054;1.17e-08;3!UBERON:0010077;8.37e-07;4!UBERON:0005389;8.37e-07;4!UBERON:0005904;8.37e-07;4!UBERON:0000484;8.37e-07;4!UBERON:0000965;8.37e-07;4!UBERON:0001803;8.37e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0001301;2.93e-23;1!UBERON:0000966;8.66e-19;5!UBERON:0005388;8.66e-19;5!UBERON:0001802;8.66e-19;5!UBERON:0000970;3.49e-18;20!UBERON:0002104;2.43e-17;21!UBERON:0000020;7.11e-16;23!UBERON:0001032;3.12e-15;24!UBERON:0004456;3.12e-15;24!UBERON:0001905;3.62e-12;2!UBERON:0002757;3.62e-12;2!UBERON:0010134;3.62e-12;2!UBERON:0005408;3.62e-12;2!UBERON:0001899;3.62e-12;2!UBERON:0000019;3.48e-11;19!UBERON:0000047;3.48e-11;19!UBERON:0004088;3.48e-11;19!UBERON:0010230;3.48e-11;19!UBERON:0001456;3.51e-10;21!UBERON:0006947;1.17e-08;3!UBERON:0004054;1.17e-08;3!UBERON:0010077;8.37e-07;4!UBERON:0005389;8.37e-07;4!UBERON:0005904;8.37e-07;4!UBERON:0000484;8.37e-07;4!UBERON:0000965;8.37e-07;4!UBERON:0001803;8.37e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,3.28e-23,1;UBERON:0000970,2.38e-17,21;UBERON:0002104,2.38e-17,21;UBERON:0000966,7.79e-16,6;UBERON:0005388,7.79e-16,6;UBERON:0001802,7.79e-16,6;UBERON:0000020,3.06e-15,24;UBERON:0001032,3.06e-15,24;UBERON:0004456,3.06e-15,24;UBERON:0001905,3.62e-12,2;UBERON:0002757,3.62e-12,2;UBERON:0010134,3.62e-12,2;UBERON:0005408,3.62e-12,2;UBERON:0001899,3.62e-12,2;UBERON:0000019,1.15e-10,20;UBERON:0000047,1.15e-10,20;UBERON:0010312,1.15e-10,20;UBERON:0004088,1.15e-10,20;UBERON:0010230,1.15e-10,20;UBERON:0003072,1.15e-10,20;UBERON:0004128,1.15e-10,20;UBERON:0003071,1.15e-10,20;UBERON:0001456,9.40e-10,22;UBERON:0006947,1.21e-08,3;UBERON:0004054,1.21e-08,3;UBERON:0005085,4.30e-07,31;UBERON:0010077,8.14e-07,4;UBERON:0005389,8.14e-07,4;UBERON:0000484,8.14e-07,4;UBERON:0002546,8.14e-07,4;UBERON:0000965,8.14e-07,4;UBERON:0001803,8.14e-07,4;UBERON:0003073,8.14e-07,4;UBERON:0005426,8.14e-07,4;UBERON:0005904,8.61e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.92664118308092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451191321234361,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0.173559738335131,0,0,8.73633341210151,0,0,0,0,0,0,706.641776420725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,16.6018361923477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60710550763486,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,177.905118455698,131.151297738163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,7.25607410519832,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44803554349179,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.92664118308092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451191321234361,0.19606253431774,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0.173559738335131,0,0,8.73633341210151,0,0,0,0,0,0,706.641776420725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,16.6018361923477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60710550763486,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,177.905118455698,131.151297738163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,7.25607410519832,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44803554349179,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@NRL | |short_description=p1@NRL | ||
}} | }} |
Latest revision as of 13:02, 19 September 2015
Short description: | p1@NRL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NRL_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -1bp_to_ENST00000397002_5end |
EntrezGene: | NRL |
HGNC: | 8002 |
UniProt: | P54845 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 8.14e-07 | 4 |
vertebrate lens cell | 8.14e-07 | 4 |
lens epithelial cell | 8.14e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
epididymis | 3.28e-23 | 1 |
eye | 2.38e-17 | 21 |
visual system | 2.38e-17 | 21 |
retina | 7.79e-16 | 6 |
photoreceptor array | 7.79e-16 | 6 |
posterior segment of eyeball | 7.79e-16 | 6 |
sense organ | 3.06e-15 | 24 |
sensory system | 3.06e-15 | 24 |
entire sense organ system | 3.06e-15 | 24 |
pineal body | 3.62e-12 | 2 |
regional part of epithalamus | 3.62e-12 | 2 |
secretory circumventricular organ | 3.62e-12 | 2 |
circumventricular organ | 3.62e-12 | 2 |
epithalamus | 3.62e-12 | 2 |
camera-type eye | 1.15e-10 | 20 |
simple eye | 1.15e-10 | 20 |
immature eye | 1.15e-10 | 20 |
ocular region | 1.15e-10 | 20 |
eyeball of camera-type eye | 1.15e-10 | 20 |
optic cup | 1.15e-10 | 20 |
optic vesicle | 1.15e-10 | 20 |
eye primordium | 1.15e-10 | 20 |
face | 9.40e-10 | 22 |
male genital duct | 1.21e-08 | 3 |
internal male genitalia | 1.21e-08 | 3 |
ectodermal placode | 4.30e-07 | 31 |
cuboidal epithelium | 8.14e-07 | 4 |
transparent eye structure | 8.14e-07 | 4 |
simple cuboidal epithelium | 8.14e-07 | 4 |
cranial placode | 8.14e-07 | 4 |
lens of camera-type eye | 8.14e-07 | 4 |
epithelium of lens | 8.14e-07 | 4 |
lens placode | 8.14e-07 | 4 |
lens vesicle | 8.14e-07 | 4 |
duct of male reproductive system | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.29e-08 | 11 |
lung small cell carcinoma | 9.11e-07 | 4 |