FFCP PHASE1:Hg19::chr5:102201562..102201573,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5066 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8596 | |||
|TSSclassifier=strong | |||
|UniProt=A6NMH0,P19021 | |||
|association_with_transcript=35bp_to_ENST00000348126,ENST00000379787,NM_000919,NM_001177306,NM_138766,NM_138821,NM_138822,NR_033440,uc003kns.2,uc003knt.2,uc003knu.2,uc003knv.2,uc003knw.2,uc011cuz.1_5end | |||
|cluster_id=chr5:102201562..102201573,+ | |||
|coexpression_cluster_id=C188 | |||
|description=CAGE_peak_7_at_PAM_5end | |||
|id=chr5:102201562..102201573,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.82e-22!180;CL:0000057!7.37e-20!75;CL:0002620!2.31e-13!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.25e-21;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.81e-22,23;CL:0000057,1.31e-16,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;5.93e-07;5!DOID:450;5.93e-07;5!DOID:66;5.93e-07;5!DOID:423;5.93e-07;5!DOID:0080000;5.93e-07;5!DOID:11722;5.93e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.98e-07,5;DOID:450,3.98e-07,5;DOID:66,3.98e-07,5;DOID:423,3.98e-07,5;DOID:0080000,3.98e-07,5;DOID:11722,3.98e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.63e-09!83;UBERON:0002329!4.63e-09!83;UBERON:0003077!4.63e-09!83;UBERON:0003059!4.63e-09!83;UBERON:0007282!4.63e-09!83;UBERON:0009618!4.63e-09!83;UBERON:0007285!4.63e-09!83;UBERON:0002199!1.77e-08!45;UBERON:0002416!1.77e-08!45;UBERON:0000475!2.43e-08!365;UBERON:0004290!3.57e-08!70;UBERON:0002097!9.69e-08!40;UBERON:0007100!1.55e-07!27;UBERON:0000486!4.96e-07!82;UBERON:0000468!7.49e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;6.29e-13;25!UBERON:0000948;1.10e-09;22!UBERON:0004457;4.34e-09;9!UBERON:0000042;4.34e-09;9!UBERON:0002097;4.88e-09;41!UBERON:0002199;2.98e-08;46!UBERON:0002416;2.98e-08;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.26e-12,41;UBERON:0002199,1.62e-12,46;UBERON:0002416,1.62e-12,46;UBERON:0007100,2.66e-11,27;UBERON:0000948,2.64e-08,24;UBERON:0005498,2.64e-08,24;UBERON:0004140,2.64e-08,24;UBERON:0009881,2.64e-08,24;UBERON:0004141,2.64e-08,24;UBERON:0003084,2.64e-08,24;UBERON:0007005,2.64e-08,24;UBERON:0004139,2.64e-08,24;UBERON:0004291,2.64e-08,24;UBERON:0007524,3.19e-07,73;UBERON:0002329,5.14e-07,71;UBERON:0003059,5.14e-07,71;UBERON:0007282,5.14e-07,71;UBERON:0004290,5.14e-07,71;UBERON:0009618,5.14e-07,71;UBERON:0004797,5.28e-07,7;UBERON:0003077,8.20e-07,72;UBERON:0007285,8.20e-07,72;UBERON:0004872,9.01e-07,83 | |||
|phase1_expression=1.63510541343501,0.642301571672949,1.55049844505568,1.0007329835313,1.34088328328186,0.872338524100369,2.53299878168311,1.26343974685366,0,0.245733936501509,0,0.218441372130172,0,0.37129905888014,0,3.36162573225888,3.61616716814386,2.92124036154949,2.43966399395253,0.369363174230364,0.408001382488506,0,0.572471974262113,2.05311637609326,0.502170558379211,0,0,0,0,0.383829398097213,0.464448369948228,0,0,0,0,0,0.293600439334847,1.10799081706375,0,0.868043482863407,0,0,0,0,0,0,0,0.411167888021826,0.309706370895104,0,0.256160706529101,0,0,1.29096936716765,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0.802320587350522,0.434473211648397,0,0.670700859703636,0,0.722878304769133,1.00267582127178,2.31754430337318,0.795285947051099,0,1.51255707462509,0.443458794925128,0.263504357079378,0,0,0,0.649094787309367,0.522389211897802,1.06366368415092,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0,0.367663080345869,0.81014194788176,0.17859945656816,0.44905874525234,0.450445921933289,0,0,0.183201743930407,0,0,0,2.98183171017191,0.633152558322899,1.72131935057184,4.30254931123221,2.4826786753885,3.36406560085384,0,1.2333377420858,1.24484414159907,0.808264032418128,0.163461903113459,0.605429710579726,0.576175924479999,0.70296429550139,0,1.1409436430889,1.79338416662161,4.11020745253177,2.91371299862637,4.21352420106745,0.816616685019573,0.61417158655884,0.929932030581889,1.18800285728205,0.247266929278557,0,0,0.841680569770331,0.875829639103749,0.831192346452549,0.877955241761676,0.612975591598039,1.65261864797256,0.794025282120147,4.12596162084383,2.77624605464138,1.69545520927649,7.20218630602566,6.59536187126009,6.1833729610951,9.1197259602479,5.23206629947925,4.96928726322113,2.77677151668526,3.22174645248048,7.11242650002772,10.2952781829818,5.44061330429257,1.86516651541536,0.386521706326594,0,0,0.243947412259191,0.397589304964456,0.464775771478074,1.24393266018445,0.756962552626885,0,1.56449532329816,2.57296375277154,0,0.928735856063958,0,0.236613600079688,0.337169380156203,0.241011029883482,0.55146986366197,0.435758888184812,0.949082476444386,0.674156540800822,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.651616610620649,0,0,1.15930404975077,0.234817388471643,0,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0.141775097242386,0.179117045405697,0,0,0,0,0.414656231081544,0.144119953416961,0,0.317489471460845,0.381988425558278,1.17217447210047,0,0,0,0,1.00917975910825,1.74384027533312,1.0267360014933,1.29271715757778,0,0,1.32969058292435,2.08014873822732,0,0,0,0.142977993658148,0,0,0,0,0,1.20575750823834,1.74306691720059,0.799783929456456,0,0,0,0.718874566474748,0,2.85273810081437,1.88215698667853,0.205476322550383,1.96967059563885,0,0.788123040807709,1.2937654491571,0.77005821767849,2.28685161800217,0,3.86644406388848,0.837581326671744,0,0,0,0,0.24538298343828,0,0.813795071099207,0.831883446123229,1.07057393278297,0.315404830067869,0.468565659970853,0.300946099727719,0,1.03473071292505,0.664225598535437,0.368738337083406,3.99664626553181,0,0,0.206768026122887,0.215714200818617,0.320182673410333,0,0,0,1.98486246255021,3.22270143904931,1.96462066103151,2.81906128362542,2.55853624533352,1.93024705372329,0,0.925258162815933,0.887808626565635,0.98552587216571,1.03850885836724,1.51073491997947,0,0,0.184161977871793,0.68888668898764,0.546273504020151,0.524497659837696,0,0.231046011313244,0.784349769176855,0,0.527758144464379,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,2.05160100093111,0.328014645699706,0.650756789328606,0,0.183138929636687,0,0,0,0,1.35339005608971,1.07834031980251,0.307007349452259,0.413509717453592,0.214840489736547,0.435050081742686,0.596586391912706,0.979352392114111,0,0,0,0,1.39453664789186,2.83331112147576,0,0.616067160352178,0.532306030317022,0,2.03856641014312,0.143124886741991,0.744316738719335,0.632758849437452,0.38126038784765,0,0,0.636406495851874,0,0.359744915166629,0.54907405947211,0.589062011728432,1.01091240786658,0,1.26377536871694,0,1.94970791705028,1.05650146756755,0.136499911407986,1.1312434556297,0,2.2054613741845,0.66343897524122,3.06915619677634,0,0,0.202910376962704,0.6196469961995,1.40847801266121,1.00387946542836,0,0,0.709522128141196,3.58882980006029,3.29294892959902,3.03578539012572,1.39973888097993,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,1.48171507906718,0,0,0.228234679033192,0,0,1.01575066680962,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,0,0,1.17206543417515,0.36408156524854,0,2.55722532125772,0,0.296964680832639,0.307160702099232,0.994147647766298,0.281338832821026,0.111308705022906,0,0,2.98871982376605,0.276283915531148,0,1.73856760253663,0,2.4883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| |||
|short_description=p7@PAM | |||
}} |
Latest revision as of 13:01, 19 September 2015
Short description: | p7@PAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PAM_5end |
Coexpression cluster: | C188_left_heart_tongue_skeletal_Skeletal_diaphragm_throat |
Association with transcript: | 35bp_to_ENST00000348126, ENST00000379787, NM_000919, NM_001177306, NM_138766, NM_138821, NM_138822, NR_033440, uc003kns.2, uc003knt.2, uc003knu.2, uc003knv.2, uc003knw.2, uc011cuz.1_5end |
EntrezGene: | PAM |
HGNC: | 8596 |
UniProt: | A6NMH0P19021 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.81e-22 | 23 |
fibroblast | 1.31e-16 | 76 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.26e-12 | 41 |
integument | 1.62e-12 | 46 |
integumental system | 1.62e-12 | 46 |
primary circulatory organ | 2.66e-11 | 27 |
heart | 2.64e-08 | 24 |
primitive heart tube | 2.64e-08 | 24 |
primary heart field | 2.64e-08 | 24 |
anterior lateral plate mesoderm | 2.64e-08 | 24 |
heart tube | 2.64e-08 | 24 |
heart primordium | 2.64e-08 | 24 |
cardiac mesoderm | 2.64e-08 | 24 |
cardiogenic plate | 2.64e-08 | 24 |
heart rudiment | 2.64e-08 | 24 |
dense mesenchyme tissue | 3.19e-07 | 73 |
somite | 5.14e-07 | 71 |
presomitic mesoderm | 5.14e-07 | 71 |
presumptive segmental plate | 5.14e-07 | 71 |
dermomyotome | 5.14e-07 | 71 |
trunk paraxial mesoderm | 5.14e-07 | 71 |
blood vessel layer | 5.28e-07 | 7 |
paraxial mesoderm | 8.20e-07 | 72 |
presumptive paraxial mesoderm | 8.20e-07 | 72 |
splanchnic layer of lateral plate mesoderm | 9.01e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.98e-07 | 5 |
myotonic disease | 3.98e-07 | 5 |
muscle tissue disease | 3.98e-07 | 5 |
myopathy | 3.98e-07 | 5 |
muscular disease | 3.98e-07 | 5 |
myotonic dystrophy | 3.98e-07 | 5 |