FFCP PHASE1:Hg19::chrX:132549482..132549493,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2239 | |EntrezGene=2239 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4452 | |HGNC=4452 | ||
|TSSclassifier=strong | |||
|UniProt=O75487 | |UniProt=O75487 | ||
|association_with_transcript=24bp_to_ENST00000370828_5end | |association_with_transcript=24bp_to_ENST00000370828_5end | ||
|cluster_id=chrX:132549482..132549493,- | |||
|coexpression_cluster_id=C4850 | |coexpression_cluster_id=C4850 | ||
|description=CAGE_peak_4_at_GPC4_5end | |description=CAGE_peak_4_at_GPC4_5end | ||
|id=chrX:132549482..132549493,- | |id=chrX:132549482..132549493,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000128;1.67e-08;7!CL:0000126;1.67e-08;7!CL:0000127;1.67e-08;7!CL:0002322;3.20e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,1.32e-08,7;CL:0000126,1.32e-08,7;CL:0000127,1.32e-08,7;CL:0002453,1.32e-08,7;CL:0002322,3.39e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.93e-17!115;UBERON:0000468!1.91e-12!659;UBERON:0005743!8.24e-12!86;UBERON:0001017!1.29e-11!82;UBERON:0000153!5.57e-11!129;UBERON:0007811!5.57e-11!129;UBERON:0000033!9.30e-11!123;UBERON:0003075!1.04e-10!86;UBERON:0007284!1.04e-10!86;UBERON:0004121!1.04e-10!169;UBERON:0001049!1.11e-10!57;UBERON:0005068!1.11e-10!57;UBERON:0006241!1.11e-10!57;UBERON:0007135!1.11e-10!57;UBERON:0000924!3.46e-10!173;UBERON:0006601!3.46e-10!173;UBERON:0002346!6.98e-10!90;UBERON:0000475!7.29e-10!365;UBERON:0000062!1.18e-09!511;UBERON:0002616!2.53e-09!59;UBERON:0000073!2.74e-09!94;UBERON:0001016!2.74e-09!94;UBERON:0000955!1.19e-08!69;UBERON:0006238!1.19e-08!69;UBERON:0000467!1.38e-08!625;UBERON:0000064!1.73e-08!219;UBERON:0000480!1.96e-08!626;UBERON:0000922!2.17e-08!612;UBERON:0003080!3.53e-07!42;UBERON:0002780!5.05e-07!41;UBERON:0001890!5.05e-07!41;UBERON:0006240!5.05e-07!41;UBERON:0003056!5.96e-07!61 | |ontology_enrichment_uberon=UBERON:0007023!1.93e-17!115;UBERON:0000468!1.91e-12!659;UBERON:0005743!8.24e-12!86;UBERON:0001017!1.29e-11!82;UBERON:0000153!5.57e-11!129;UBERON:0007811!5.57e-11!129;UBERON:0000033!9.30e-11!123;UBERON:0003075!1.04e-10!86;UBERON:0007284!1.04e-10!86;UBERON:0004121!1.04e-10!169;UBERON:0001049!1.11e-10!57;UBERON:0005068!1.11e-10!57;UBERON:0006241!1.11e-10!57;UBERON:0007135!1.11e-10!57;UBERON:0000924!3.46e-10!173;UBERON:0006601!3.46e-10!173;UBERON:0002346!6.98e-10!90;UBERON:0000475!7.29e-10!365;UBERON:0000062!1.18e-09!511;UBERON:0002616!2.53e-09!59;UBERON:0000073!2.74e-09!94;UBERON:0001016!2.74e-09!94;UBERON:0000955!1.19e-08!69;UBERON:0006238!1.19e-08!69;UBERON:0000467!1.38e-08!625;UBERON:0000064!1.73e-08!219;UBERON:0000480!1.96e-08!626;UBERON:0000922!2.17e-08!612;UBERON:0003080!3.53e-07!42;UBERON:0002780!5.05e-07!41;UBERON:0001890!5.05e-07!41;UBERON:0006240!5.05e-07!41;UBERON:0003056!5.96e-07!61 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.42e-09,114;UBERON:0003075,4.12e-07,82;UBERON:0007284,4.12e-07,82 | |||
|phase1_expression=2.54349730978779,4.28201047781966,1.69145284915165,2.00146596706261,1.34088328328186,0.872338524100369,5.06599756336621,5.68547886084148,4.70134130759709,1.47440361900905,0.697801167972428,3.71350332621293,3.69273769519835,0,0.331397375727916,0,0,0,0,2.70866327768933,3.26401105990805,7.20945859399602,5.43848375549008,5.88560027813402,11.4243802031271,0.305653622991805,0.738905305049512,0.314843125254717,0,0,0,0,0.30120591877825,0,0,0,0,0,0.401088894940283,0.868043482863407,0,0,0,0.726991193897824,0,0.242584061187816,0,0,0,0.28769239232215,0.512321413058201,0,0,0.645484683583826,0,0.376484679085209,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0,0,1.21079900526674,0,0,0,0,0.209658645508376,0,0.150176892841506,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0,0,0.289693037921647,0.795285947051099,0.973269740605272,1.79616152611729,1.99556457716308,3.60122621341817,1.37528029272598,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.633152558322899,0,2.29469296599051,0,0.560677600142307,2.1349799145941,0.24666754841716,0.311211035399766,0,0,0.605429710579726,0,0,0.312160076830321,0,0.896692083310806,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0.619954687054593,0,0.741800787835671,0.910161361938026,0,0.336672227908132,0.500474079487857,0,0,0,1.05166641234618,0.453728732640084,1.25572744982203,1.06778694409284,1.05965950579781,0,0,0.515281080091258,0.18611685633159,2.70042131586026,1.16924406193438,0.252433774244115,0.184099797284599,0,2.4850671476163,0.604512589365842,0,0.386521706326594,0.272746120590835,0,8.17223831068289,8.74696470921803,7.66880022938821,4.35376431064556,5.2987378683882,10.2193660541232,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,1.20097467208968,1.64625428112938,0,0,0.370353780634118,0,0,1.44331342025273,1.27523445472584,4.3441216867254,0,0.462985512576611,0,0,0,0.492434012174795,5.85010662848094,3.71577905721821,0,1.84780341018745,1.27597587518148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0.87192013766656,0.22001485746285,0.129271715757778,0,0.845302752556,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0.502257091432126,0,0,0,5.70547620162874,0.144781306667579,0.821905290201534,1.43248770591916,0,0,0,0,1.52456774533478,2.60279707715243,0,0.670065061337395,0.637938751653163,0,0,0,0.613457458595699,1.00034104211935,0.271265023699736,0,0,0,0,1.80567659836631,2.27407504055985,1.03473071292505,0,0,0,0.195801157462741,1.37257369524342,0,0,0.320182673410333,0,1.66435439510497,1.20956117331872,3.2254015016441,12.1234958897569,6.17452207752762,2.69092213436972,12.2809739776009,3.86049410744658,0,0,0,0,0,0.464841513839837,0,4.21063587636898,0,0,0,0,1.80479845162965,1.30926073077505,3.13739907670742,0,0.73886140225013,0,0.170093705276516,0.647747748306418,0,0.270946437543853,1.50506932156456,1.52925763827023,2.49322802678617,0.671624264166535,0,0,0,1.64007322849853,0.325378394664303,0.824328093181778,4.2121953816438,2.31026599777646,0.574265537996172,1.95018073810956,0,0.290012154876366,0.462145851343933,0.460511024178389,0.551346289938122,0.859361958946189,1.30515024522806,0.511359764496605,0.267096106940212,0.826424576804891,3.45942121257191,0.510450849978337,0.708104465988849,0,0,0,0.308033580176089,0,0,0,0.429374660225974,1.116475108079,0,0.38126038784765,0.511795582622668,0,0,0,0.539617372749944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31178950409327,0.202910376962704,0.30982349809975,0,0.286822704408103,0.294747123039363,0,0,1.68886108238131,0.658589785919804,0,0,0.288666338176536,0,0,0.847294206991012,0.86101074534246,1.68471475667626,1.7737206141467,3.90529780351831,0,0,0,0,0,0,0,0,5.12755541411871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12923118845163,0,0.614481528616916,0.671028323677248,0.333698283423817,1.17232857241224,0,2.46174797895425,0,0,0,0,3.07667176470977,0.121360521749513,0,0,0.47748896947538,0.296964680832639,0,0,1.96937182974718,0,0,4.64475897881586,3.78571177677032,0.276283915531148,0,2.76125442755818,0,0,1.88723537409386,0,0,2.66337195219721,0,2.22273980289274,0,1.11321717794222,0,0.260427761085233,0.61221999997337,0.724999575434793,0,0.762760950878299,0,0,0,0.173624994933292,0.885741385813839,1.08536794762867,0,0.774054819518572,0.295547618953547,0.219385397153973,0,0,1.38510465306835,0,2.07507513949254,1.6156375993759,0.54323685961004,3.50901275705111,1.92354946143911,1.06606955203727,0,0,0,0,0,0,0,0,3.16497096792041,2.12202650606892,0,4.54416143458391,4.97630965539252,1.41532103205343,4.27721101453538,0,0,0,1.14581926067151,6.42062117839031,0.702793337176017,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0.61214552326098,0.884612114798832,0.300646838828985,0,0,0.330991955875499,0.313932918407225,1.19472429772959,0,0,1.90915712168644,0,0,2.79562669187248,0.687944129886466,0,0,0,3.0066595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| ||
|short_description=p4@GPC4 | |short_description=p4@GPC4 | ||
}} | }} |
Latest revision as of 12:03, 19 September 2015
Short description: | p4@GPC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GPC4_5end |
Coexpression cluster: | C4850_H9_HES3GFP_teratocarcinoma_testicular_Preadipocyte_anaplastic_iPS |
Association with transcript: | 24bp_to_ENST00000370828_5end |
EntrezGene: | GPC4 |
HGNC: | 4452 |
UniProt: | O75487 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 1.32e-08 | 7 |
macroglial cell | 1.32e-08 | 7 |
astrocyte | 1.32e-08 | 7 |
oligodendrocyte precursor cell | 1.32e-08 | 7 |
embryonic stem cell | 3.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.42e-09 | 114 |
neural plate | 4.12e-07 | 82 |
presumptive neural plate | 4.12e-07 | 82 |