FFCP PHASE1:Hg19::chr3:69590414..69590433,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23150 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24886 | |||
|TSSclassifier=strong | |||
|UniProt=C9J7M5 | |||
|association_with_transcript=57bp_to_ENST00000497880_5end | |||
|cluster_id=chr3:69590414..69590433,- | |||
|coexpression_cluster_id=C2560 | |||
|description=CAGE_peak_14_at_FRMD4B_5end | |||
|id=chr3:69590414..69590433,- | |||
|ontology_enrichment_celltype=CL:0002076!1.31e-25!43;CL:0000223!1.86e-18!59;CL:0002368!3.92e-17!13;CL:0002251!1.86e-13!21;CL:0002202!4.04e-09!9;CL:0002632!4.04e-09!9;CL:0000066!4.54e-09!254;CL:0002623!3.85e-08!3;CL:0002159!5.09e-08!13;CL:0000068!6.40e-08!3;CL:0000069!6.40e-08!3;CL:0000307!6.40e-08!3;CL:0000377!6.40e-08!3;CL:0002328!6.86e-08!3;CL:0002621!1.01e-07!3;CL:0000240!8.41e-07!6;CL:0000311!8.41e-07!6;CL:0000079!8.41e-07!6;CL:0000237!8.41e-07!6;CL:0000036!8.41e-07!6;CL:0000357!8.41e-07!6;CL:0000114!8.41e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.97e-32;42!CL:0002368;1.01e-29;13!CL:0002251;2.77e-18;20!CL:0002623;1.13e-15;3!CL:0000307;3.26e-15;3!CL:0002621;6.01e-15;3!CL:0000240;1.53e-13;6!CL:0000311;1.53e-13;6!CL:0000079;1.53e-13;6!CL:0000237;1.53e-13;6!CL:0002202;1.92e-13;9!CL:0002632;1.92e-13;9!CL:0002327;4.14e-12;4!CL:0000622;1.34e-09;5!CL:0000312;1.36e-09;5!CL:0002159;1.29e-08;14!CL:0000154;4.53e-08;6!CL:0002231;1.37e-07;3!CL:0002328;1.53e-07;3!CL:0002166;2.31e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.73e-42,42;CL:0000223,7.77e-33,58;CL:0002368,8.22e-30,13;CL:0000066,1.17e-19,253;CL:0002251,3.19e-18,20;CL:0002623,1.10e-15,3;CL:0000068,3.27e-15,3;CL:0000069,3.27e-15,3;CL:0000307,3.27e-15,3;CL:0000377,3.27e-15,3;CL:0002621,8.65e-15,3;CL:0000240,1.42e-13,6;CL:0000311,1.42e-13,6;CL:0000079,1.42e-13,6;CL:0000237,1.42e-13,6;CL:0000036,1.42e-13,6;CL:0000357,1.42e-13,6;CL:0000114,1.42e-13,6;CL:0002202,1.55e-13,9;CL:0002632,1.55e-13,9;CL:0002327,4.72e-12,4;CL:0000312,1.18e-09,5;CL:0000622,1.32e-09,5;CL:0002321,2.64e-09,250;CL:0002159,1.14e-08,14;CL:0000154,4.48e-08,6;CL:0002328,1.18e-07,3;CL:0002231,1.35e-07,3;CL:0002166,2.13e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.18e-17;58!CL:0000377;3.26e-15;3!CL:0000357;1.53e-13;6!CL:0000114;1.53e-13;6 | |||
|ontology_enrichment_disease=DOID:1749!2.15e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.83e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.05e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.69e-20!72;UBERON:0004119!2.57e-17!169;UBERON:0000925!2.57e-17!169;UBERON:0006595!2.57e-17!169;UBERON:0000161!3.24e-16!35;UBERON:0000166!2.21e-15!21;UBERON:0000165!1.20e-12!28;UBERON:0000930!1.20e-12!28;UBERON:0001007!8.68e-12!155;UBERON:0001555!8.68e-12!155;UBERON:0007026!8.68e-12!155;UBERON:0000065!1.68e-10!53;UBERON:0003408!2.92e-10!10;UBERON:0000974!3.86e-10!10;UBERON:0003102!5.52e-10!95;UBERON:0001044!1.25e-09!6;UBERON:0003293!1.25e-09!6;UBERON:0003294!1.25e-09!6;UBERON:0010047!1.25e-09!6;UBERON:0000167!1.25e-09!6;UBERON:0007196!2.85e-09!14;UBERON:0001558!2.85e-09!14;UBERON:0001444!3.73e-09!48;UBERON:0003126!6.80e-08!7;UBERON:0001005!6.80e-08!7;UBERON:0004815!6.86e-08!3;UBERON:0002031!6.86e-08!3;UBERON:0003729!7.45e-08!5;UBERON:0004921!7.54e-08!129;UBERON:0004185!7.54e-08!129;UBERON:0000077!8.92e-08!130;UBERON:0001949!1.01e-07!3;UBERON:0000365!1.12e-07!5;UBERON:0005157!1.77e-07!51;UBERON:0001041!2.45e-07!98;UBERON:0006947!5.70e-07!3;UBERON:0004054!5.70e-07!3;UBERON:0005178!7.44e-07!34;UBERON:0002224!7.44e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;2.89e-15;19!UBERON:0000166;2.89e-15;19!UBERON:0001949;6.01e-15;3!UBERON:0000486;1.11e-13;12!UBERON:0003729;6.70e-13;13!UBERON:0000165;1.28e-12;28!UBERON:0001911;4.14e-12;4!UBERON:0000344;6.08e-11;20!UBERON:0001004;7.65e-10;65!UBERON:0003350;1.05e-09;8!UBERON:0000365;5.13e-09;5!UBERON:0001044;4.53e-08;6!UBERON:0003293;4.53e-08;6!UBERON:0003294;4.53e-08;6!UBERON:0010047;4.53e-08;6!UBERON:0003408;4.53e-08;6!UBERON:0000167;4.53e-08;6!UBERON:0005911;5.37e-08;36!UBERON:0007196;5.77e-08;15!UBERON:0001558;5.77e-08;15!UBERON:0000974;8.36e-08;6!UBERON:0005910;1.37e-07;6!UBERON:0004815;1.53e-07;3!UBERON:0002031;1.53e-07;3!UBERON:0004807;1.72e-07;22!UBERON:0000065;6.93e-07;44!UBERON:0003126;8.76e-07;7!UBERON:0001005;8.76e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.31e-17,74;UBERON:0001949,8.65e-15,3;UBERON:0000161,3.25e-14,36;UBERON:0004119,1.90e-13,160;UBERON:0000925,1.90e-13,160;UBERON:0006595,1.90e-13,160;UBERON:0000166,5.50e-13,22;UBERON:0003729,7.80e-13,13;UBERON:0000165,4.33e-12,29;UBERON:0000930,4.33e-12,29;UBERON:0001911,4.72e-12,4;UBERON:0005333,4.72e-12,4;UBERON:0008425,4.72e-12,4;UBERON:0005311,4.72e-12,4;UBERON:0003102,6.63e-12,99;UBERON:0000344,6.92e-11,20;UBERON:0003350,1.28e-09,8;UBERON:0000365,4.21e-09,5;UBERON:0000153,7.93e-09,62;UBERON:0007811,7.93e-09,62;UBERON:0000033,2.22e-08,56;UBERON:0001044,4.48e-08,6;UBERON:0003293,4.48e-08,6;UBERON:0003294,4.48e-08,6;UBERON:0010047,4.48e-08,6;UBERON:0000167,4.48e-08,6;UBERON:0007196,5.11e-08,15;UBERON:0001558,5.11e-08,15;UBERON:0001007,8.14e-08,145;UBERON:0001555,8.14e-08,145;UBERON:0007026,8.14e-08,145;UBERON:0005910,1.16e-07,6;UBERON:0004815,1.18e-07,3;UBERON:0002031,1.18e-07,3;UBERON:0005153,1.60e-07,37;UBERON:0000065,1.74e-07,54;UBERON:0003126,8.77e-07,7;UBERON:0001005,8.77e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.90361775633475,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,1.09098448236334,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74375713521564,2.24803506515239,3.61904300681871,2.12953423864618,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,1.6798212819886,2.1266264586358,7.25424033893071,5.81267877027924,1.15014803749563,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,5.24861636934609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,5.95025695299521,3.45942121257191,8.55005173713714,2.12431339796655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69421915631434,1.34060455107157,2.17781969722645,0,0.86101074534246,0,1.7737206141467,1.37834040124176,0,0,0,0,0,0,0,0,0.320472213382419,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,1.0241410345695,0,0,0,0,0,0,0,0,0,0,0,0,3.34616986268648,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.52196314077761,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0.235694034616795,0,0,0.101998217636322,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0,0,0,0,5.37362552494447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628817220398664,0,0,0,0,4.46838880439127,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.999843263696853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.294577847375,3.11038630016486,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4351701475359,1.41563668017288,0.733714394086716,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0.766574565837572,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.313972371402056,0,0,0,0,0,0.142953088353313,0,0,0,0,1.65772931330429,3.0729325876911,4.14755797088455,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0.33883824611688,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0.187967835959707,0.128915775947154,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886889507080059,0,0,0,0,0,0,0,0,0.426467963801962,1.1903221573187,0.258355639344024,0.931120714437869,0,1.0820016907288,0.606351566874658,0.217716747896961,0,0.26940821205835,0.143444410785353,0.665320713092027,1.22104902916462,0,0,0,0,0,0,0,0,0 | |||
|short_description=p14@FRMD4B | |||
}} |
Latest revision as of 11:58, 19 September 2015
Short description: | p14@FRMD4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_FRMD4B_5end |
Coexpression cluster: | C2560_nasal_squamous_Small_cervical_Prostate_Tracheal_Urothelial |
Association with transcript: | 57bp_to_ENST00000497880_5end |
EntrezGene: | FRMD4B |
HGNC: | 24886 |
UniProt: | C9J7M5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory system | 1.31e-17 | 74 |
gingival epithelium | 8.65e-15 | 3 |
orifice | 3.25e-14 | 36 |
endoderm-derived structure | 1.90e-13 | 160 |
endoderm | 1.90e-13 | 160 |
presumptive endoderm | 1.90e-13 | 160 |
oral opening | 5.50e-13 | 22 |
mouth mucosa | 7.80e-13 | 13 |
mouth | 4.33e-12 | 29 |
stomodeum | 4.33e-12 | 29 |
mammary gland | 4.72e-12 | 4 |
mammary bud | 4.72e-12 | 4 |
mammary ridge | 4.72e-12 | 4 |
mammary placode | 4.72e-12 | 4 |
surface structure | 6.63e-12 | 99 |
mucosa | 6.92e-11 | 20 |
epithelium of mucosa | 1.28e-09 | 8 |
urothelium | 4.21e-09 | 5 |
anterior region of body | 7.93e-09 | 62 |
craniocervical region | 7.93e-09 | 62 |
head | 2.22e-08 | 56 |
saliva-secreting gland | 4.48e-08 | 6 |
gland of oral region | 4.48e-08 | 6 |
gland of foregut | 4.48e-08 | 6 |
oral gland | 4.48e-08 | 6 |
oral cavity | 4.48e-08 | 6 |
tracheobronchial tree | 5.11e-08 | 15 |
lower respiratory tract | 5.11e-08 | 15 |
digestive system | 8.14e-08 | 145 |
digestive tract | 8.14e-08 | 145 |
primitive gut | 8.14e-08 | 145 |
transitional epithelium | 1.16e-07 | 6 |
lower respiratory tract epithelium | 1.18e-07 | 3 |
epithelium of bronchus | 1.18e-07 | 3 |
epithelial bud | 1.60e-07 | 37 |
respiratory tract | 1.74e-07 | 54 |
trachea | 8.77e-07 | 7 |
respiratory airway | 8.77e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.05e-08 | 14 |