FFCP PHASE1:Hg19::chr3:109050105..109050109,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55211 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19200 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-498bp_to_ENST00000475135_5end | |||
|cluster_id=chr3:109050105..109050109,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_4_at_DPPA4_5end | |||
|id=chr3:109050105..109050109,- | |||
|ontology_enrichment_celltype=CL:0002322!1.29e-26!5;CL:0000039!2.72e-12!7;CL:0000586!2.72e-12!7;CL:0000047!6.58e-11!8;CL:0000540!8.79e-09!6;CL:0000031!8.79e-09!6;CL:0000404!8.79e-09!6;CL:0000784!8.63e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.92e-75;5!CL:0002321;2.50e-25;15!CL:0000540;5.31e-24;6!CL:0000404;5.31e-24;6!CL:0000039;3.92e-20;7!CL:0000586;3.92e-20;7!CL:0000148;2.61e-14;10!CL:0000147;2.13e-10;14!CL:0000710;1.92e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.24e-75,5;CL:0000540,4.91e-24,6;CL:0000031,4.91e-24,6;CL:0000404,4.91e-24,6;CL:0000039,3.92e-20,7;CL:0000586,3.92e-20,7;CL:0000047,3.31e-18,8;CL:0000148,2.67e-14,10;CL:0000541,2.67e-14,10;CL:0000147,2.17e-10,14;CL:0000133,7.32e-09,59;CL:0000710,1.94e-07,20;CL:0000221,2.98e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;5.31e-24;6!UBERON:0009117;2.67e-14;10!UBERON:0005564;2.67e-14;10 | |||
|ontology_enrichment_disease=DOID:3095!5.27e-08!22;DOID:2994!5.27e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.43e-11;22!DOID:2994;2.43e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.47e-11,22;DOID:2994,2.47e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!9.13e-11!8;UBERON:0003135!7.66e-08!11;UBERON:0009722!3.14e-07!11;UBERON:0007690!3.14e-07!11;UBERON:0004177!9.96e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.05e-17;8!UBERON:0003135;4.66e-13;11!UBERON:0000922;3.61e-11;49!UBERON:0000991;4.14e-07;21!UBERON:0003101;8.27e-07;22!UBERON:0000079;8.27e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.05e-17,8;UBERON:0003135,4.66e-13,11;UBERON:0000991,4.14e-07,21;UBERON:0009196,4.14e-07,21;UBERON:0009117,4.14e-07,21;UBERON:0005564,4.14e-07,21;UBERON:0004176,8.27e-07,22;UBERON:0003101,8.27e-07,22;UBERON:0000079,8.27e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.63500083292463,3.04818467139416,4.99633954338929,1.45125477021519,4.28945446488568,4.74470566798579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0.738508832766417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,5.46560704781065,7.28959013965339,5.40072439437941,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378499274505237,2.62237372712869,0,5.09944148709909,2.93939145792117,0.551369397209069,1.75495277504663,0,0,0,0,0,0,0.0645889098360061,0.434523000071005,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@DPPA4 | |||
}} |
Latest revision as of 11:55, 19 September 2015
Short description: | p4@DPPA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DPPA4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -498bp_to_ENST00000475135_5end |
EntrezGene: | DPPA4 |
HGNC: | 19200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.24e-75 | 5 |
neuron | 4.91e-24 | 6 |
neuroblast | 4.91e-24 | 6 |
electrically signaling cell | 4.91e-24 | 6 |
germ line cell | 3.92e-20 | 7 |
germ cell | 3.92e-20 | 7 |
neuronal stem cell | 3.31e-18 | 8 |
melanocyte | 2.67e-14 | 10 |
melanoblast | 2.67e-14 | 10 |
pigment cell | 2.17e-10 | 14 |
neurectodermal cell | 7.32e-09 | 59 |
neurecto-epithelial cell | 1.94e-07 | 20 |
ectodermal cell | 2.98e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 1.05e-17 | 8 |
male reproductive organ | 4.66e-13 | 11 |
gonad | 4.14e-07 | 21 |
indifferent external genitalia | 4.14e-07 | 21 |
indifferent gonad | 4.14e-07 | 21 |
gonad primordium | 4.14e-07 | 21 |
external genitalia | 8.27e-07 | 22 |
male organism | 8.27e-07 | 22 |
male reproductive system | 8.27e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.47e-11 | 22 |
germ cell cancer | 2.47e-11 | 22 |