FFCP PHASE1:Hg19::chr3:108541625..108541659,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50852 | |EntrezGene=50852 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30698 | |HGNC=30698 | ||
|TSSclassifier=strong | |||
|UniProt=Q6PIZ9 | |UniProt=Q6PIZ9 | ||
|association_with_transcript=0bp_to_NM_016388,uc003dxi.1,uc010hpx.1_5end | |association_with_transcript=0bp_to_NM_016388,uc003dxi.1,uc010hpx.1_5end | ||
|cluster_id=chr3:108541625..108541659,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_TRAT1_5end | |description=CAGE_peak_1_at_TRAT1_5end | ||
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|ontology_enrichment_celltype=CL:0000738!2.20e-37!140;CL:0002087!9.12e-33!119;CL:0002031!8.50e-32!124;CL:0000037!3.52e-31!172;CL:0000566!3.52e-31!172;CL:0002032!3.07e-28!165;CL:0000837!3.07e-28!165;CL:0000988!7.88e-28!182;CL:0000084!9.17e-22!25;CL:0000827!9.17e-22!25;CL:0000791!1.06e-21!18;CL:0000789!1.06e-21!18;CL:0002420!1.06e-21!18;CL:0002419!1.06e-21!18;CL:0000790!1.06e-21!18;CL:0002057!2.24e-17!42;CL:0000838!5.12e-17!52;CL:0000542!1.78e-16!53;CL:0000051!1.78e-16!53;CL:0000766!6.82e-16!76;CL:0000860!1.58e-15!45;CL:0000839!9.25e-15!70;CL:0000557!1.99e-14!71;CL:0000625!3.75e-14!11;CL:0002009!6.95e-14!65;CL:0002194!8.35e-14!63;CL:0000576!8.35e-14!63;CL:0000040!8.35e-14!63;CL:0000559!8.35e-14!63;CL:0000763!1.08e-12!112;CL:0000049!1.08e-12!112;CL:0000624!1.88e-08!6 | |ontology_enrichment_celltype=CL:0000738!2.20e-37!140;CL:0002087!9.12e-33!119;CL:0002031!8.50e-32!124;CL:0000037!3.52e-31!172;CL:0000566!3.52e-31!172;CL:0002032!3.07e-28!165;CL:0000837!3.07e-28!165;CL:0000988!7.88e-28!182;CL:0000084!9.17e-22!25;CL:0000827!9.17e-22!25;CL:0000791!1.06e-21!18;CL:0000789!1.06e-21!18;CL:0002420!1.06e-21!18;CL:0002419!1.06e-21!18;CL:0000790!1.06e-21!18;CL:0002057!2.24e-17!42;CL:0000838!5.12e-17!52;CL:0000542!1.78e-16!53;CL:0000051!1.78e-16!53;CL:0000766!6.82e-16!76;CL:0000860!1.58e-15!45;CL:0000839!9.25e-15!70;CL:0000557!1.99e-14!71;CL:0000625!3.75e-14!11;CL:0002009!6.95e-14!65;CL:0002194!8.35e-14!63;CL:0000576!8.35e-14!63;CL:0000040!8.35e-14!63;CL:0000559!8.35e-14!63;CL:0000763!1.08e-12!112;CL:0000049!1.08e-12!112;CL:0000624!1.88e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000084;8.07e-31;25!CL:0000791;4.86e-30;18!CL:0000789;4.86e-30;18!CL:0002419;4.86e-30;18!CL:0000625;2.27e-19;11!CL:0002087;1.53e-12;104!CL:0000860;1.04e-11;33!CL:0002057;1.04e-11;33!CL:0000624;2.60e-11;6!CL:0000542;4.24e-10;53!CL:0000576;1.27e-08;48!CL:0000473;6.80e-08;39!CL:0000234;6.80e-08;39 | |ontology_enrichment_celltype_v019=CL:0000084;8.07e-31;25!CL:0000791;4.86e-30;18!CL:0000789;4.86e-30;18!CL:0002419;4.86e-30;18!CL:0000625;2.27e-19;11!CL:0002087;1.53e-12;104!CL:0000860;1.04e-11;33!CL:0002057;1.04e-11;33!CL:0000624;2.60e-11;6!CL:0000542;4.24e-10;53!CL:0000576;1.27e-08;48!CL:0000473;6.80e-08;39!CL:0000234;6.80e-08;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.19e-33,136;CL:0000084,7.20e-31,25;CL:0000827,7.20e-31,25;CL:0000791,4.29e-30,18;CL:0000789,4.29e-30,18;CL:0002420,4.29e-30,18;CL:0002419,4.29e-30,18;CL:0000790,4.29e-30,18;CL:0002087,1.13e-29,115;CL:0002031,4.24e-26,120;CL:0000037,9.67e-26,168;CL:0000988,1.86e-23,177;CL:0002032,5.51e-23,161;CL:0000837,5.51e-23,161;CL:0000625,2.21e-19,11;CL:0000838,2.30e-19,52;CL:0000542,7.88e-19,53;CL:0000051,7.88e-19,53;CL:0000860,5.15e-13,42;CL:0002057,5.15e-13,42;CL:0000766,1.28e-11,72;CL:0000624,2.57e-11,6;CL:0000473,1.27e-10,48;CL:0000234,1.27e-10,48;CL:0000839,3.04e-09,66;CL:0002194,3.73e-09,59;CL:0000576,3.73e-09,59;CL:0000040,3.73e-09,59;CL:0000559,3.73e-09,59;CL:0000557,5.23e-09,67;CL:0002009,1.17e-08,61;CL:0000763,1.02e-07,108;CL:0000049,1.02e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000790;4.86e-30;18!CL:0000051;4.24e-10;53!CL:0002057;8.15e-10;42 | |ontology_enrichment_development_v019=CL:0000790;4.86e-30;18!CL:0000051;4.24e-10;53!CL:0002057;8.15e-10;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.30e-23!102;UBERON:0003061!1.30e-23!102;UBERON:0002193!6.91e-22!112;UBERON:0007023!2.39e-15!115;UBERON:0002371!3.90e-12!80;UBERON:0002405!4.71e-11!115;UBERON:0000178!1.56e-10!15;UBERON:0000179!1.56e-10!15;UBERON:0000463!1.56e-10!15;UBERON:0001474!1.85e-10!86;UBERON:0004765!2.85e-07!101;UBERON:0001434!2.85e-07!101 | |ontology_enrichment_uberon=UBERON:0002390!1.30e-23!102;UBERON:0003061!1.30e-23!102;UBERON:0002193!6.91e-22!112;UBERON:0007023!2.39e-15!115;UBERON:0002371!3.90e-12!80;UBERON:0002405!4.71e-11!115;UBERON:0000178!1.56e-10!15;UBERON:0000179!1.56e-10!15;UBERON:0000463!1.56e-10!15;UBERON:0001474!1.85e-10!86;UBERON:0004765!2.85e-07!101;UBERON:0001434!2.85e-07!101 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.49e-15;15!UBERON:0000179;7.49e-15;15!UBERON:0000463;7.49e-15;15!UBERON:0002390;2.41e-09;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;7.49e-15;15!UBERON:0000179;7.49e-15;15!UBERON:0000463;7.49e-15;15!UBERON:0002390;2.41e-09;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.95e-20,98;UBERON:0003061,2.95e-20,98;UBERON:0002193,1.95e-19,108;UBERON:0000178,7.53e-15,15;UBERON:0000179,7.53e-15,15;UBERON:0000463,7.53e-15,15;UBERON:0002405,1.35e-10,93;UBERON:0004177,1.52e-08,7;UBERON:0005057,1.52e-08,7;UBERON:0002370,9.08e-08,4;UBERON:0005058,9.08e-08,4;UBERON:0009113,9.08e-08,4;UBERON:0003295,9.08e-08,4;UBERON:0005562,9.08e-08,4;UBERON:0002371,3.38e-07,76 | |||
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| ||
|short_description=p1@TRAT1 | |short_description=p1@TRAT1 | ||
}} | }} |
Latest revision as of 11:35, 19 September 2015
Short description: | p1@TRAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAT1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_NM_016388, uc003dxi.1, uc010hpx.1_5end |
EntrezGene: | TRAT1 |
HGNC: | 30698 |
UniProt: | Q6PIZ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.95e-20 | 98 |
blood island | 2.95e-20 | 98 |
hemolymphoid system | 1.95e-19 | 108 |
blood | 7.53e-15 | 15 |
haemolymphatic fluid | 7.53e-15 | 15 |
organism substance | 7.53e-15 | 15 |
immune system | 1.35e-10 | 93 |
hemopoietic organ | 1.52e-08 | 7 |
immune organ | 1.52e-08 | 7 |
thymus | 9.08e-08 | 4 |
hemolymphoid system gland | 9.08e-08 | 4 |
thymic region | 9.08e-08 | 4 |
pharyngeal gland | 9.08e-08 | 4 |
thymus primordium | 9.08e-08 | 4 |
bone marrow | 3.38e-07 | 76 |