FFCP PHASE1:Hg19::chr5:98105123..98105126,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000507054_5end | |association_with_transcript=-13bp_to_ENST00000507054_5end | ||
|cluster_id=chr5:98105123..98105126,+ | |||
|coexpression_cluster_id=C952 | |coexpression_cluster_id=C952 | ||
|description=CAGE_peak_26_at_RGMB_5end | |description=CAGE_peak_26_at_RGMB_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.32e-27!180;CL:0002620!4.76e-27!23;CL:0000057!5.74e-21!75;CL:0000680!6.92e-13!57;CL:0000056!6.92e-13!57;CL:0000355!6.92e-13!57;CL:0000359!1.33e-12!32;CL:0000723!2.33e-11!436;CL:0000192!7.10e-11!42;CL:0000514!7.10e-11!42;CL:0000048!8.81e-11!430;CL:0000034!9.51e-11!444;CL:0000187!3.07e-10!54;CL:0000183!8.10e-10!59;CL:0000393!1.55e-09!60;CL:0000211!1.55e-09!60;CL:0002371!5.44e-09!591;CL:0000144!4.26e-08!625;CL:0002551!5.18e-07!6 | |ontology_enrichment_celltype=CL:0000055!3.32e-27!180;CL:0002620!4.76e-27!23;CL:0000057!5.74e-21!75;CL:0000680!6.92e-13!57;CL:0000056!6.92e-13!57;CL:0000355!6.92e-13!57;CL:0000359!1.33e-12!32;CL:0000723!2.33e-11!436;CL:0000192!7.10e-11!42;CL:0000514!7.10e-11!42;CL:0000048!8.81e-11!430;CL:0000034!9.51e-11!444;CL:0000187!3.07e-10!54;CL:0000183!8.10e-10!59;CL:0000393!1.55e-09!60;CL:0000211!1.55e-09!60;CL:0002371!5.44e-09!591;CL:0000144!4.26e-08!625;CL:0002551!5.18e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002594;3.19e-17;4!CL:0000359;2.68e-09;32!CL:0002574;9.70e-09;1!CL:0002620;3.91e-08;23 | |ontology_enrichment_celltype_v019=CL:0002594;3.19e-17;4!CL:0000359;2.68e-09;32!CL:0002574;9.70e-09;1!CL:0002620;3.91e-08;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0002594,3.40e-17,4;CL:0000359,1.22e-10,32;CL:0002574,1.42e-08,1;CL:0002620,3.42e-08,23;CL:0000192,1.04e-07,43;CL:0000514,1.04e-07,43;CL:0000680,3.91e-07,58;CL:0000056,3.91e-07,58;CL:0000355,3.91e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!3.52e-10!5;DOID:450!3.52e-10!5;DOID:66!3.52e-10!5;DOID:423!3.52e-10!5;DOID:0080000!3.52e-10!5;DOID:11722!3.52e-10!5 | |ontology_enrichment_disease=DOID:17!3.52e-10!5;DOID:450!3.52e-10!5;DOID:66!3.52e-10!5;DOID:423!3.52e-10!5;DOID:0080000!3.52e-10!5;DOID:11722!3.52e-10!5 | ||
|ontology_enrichment_disease_v019=DOID:17;3.80e-14;5!DOID:450;3.80e-14;5!DOID:66;3.80e-14;5!DOID:423;3.80e-14;5!DOID:0080000;3.80e-14;5!DOID:11722;3.80e-14;5!DOID:2513;3.05e-09;1 | |ontology_enrichment_disease_v019=DOID:17;3.80e-14;5!DOID:450;3.80e-14;5!DOID:66;3.80e-14;5!DOID:423;3.80e-14;5!DOID:0080000;3.80e-14;5!DOID:11722;3.80e-14;5!DOID:2513;3.05e-09;1 | ||
|ontology_enrichment_disease_v019_2=DOID:17,2.67e-14,5;DOID:450,2.67e-14,5;DOID:66,2.67e-14,5;DOID:423,2.67e-14,5;DOID:0080000,2.67e-14,5;DOID:11722,2.67e-14,5;DOID:2513,3.06e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.74e-26!45;UBERON:0002416!1.74e-26!45;UBERON:0002097!2.71e-26!40;UBERON:0000914!2.68e-20!83;UBERON:0002329!2.68e-20!83;UBERON:0003077!2.68e-20!83;UBERON:0003059!2.68e-20!83;UBERON:0007282!2.68e-20!83;UBERON:0009618!2.68e-20!83;UBERON:0007285!2.68e-20!83;UBERON:0003102!1.02e-17!95;UBERON:0004290!3.05e-17!70;UBERON:0000486!2.40e-14!82;UBERON:0002385!4.19e-12!63;UBERON:0001015!4.19e-12!63;UBERON:0000383!4.19e-12!63;UBERON:0001134!1.40e-11!61;UBERON:0002036!1.40e-11!61;UBERON:0003082!1.40e-11!61;UBERON:0001637!6.93e-10!42;UBERON:0003509!6.93e-10!42;UBERON:0004572!6.93e-10!42;UBERON:0005256!2.99e-09!143;UBERON:0002067!6.40e-09!9;UBERON:0004016!6.40e-09!9;UBERON:0010083!6.40e-09!9;UBERON:0000475!1.74e-08!365;UBERON:0001981!7.23e-08!60;UBERON:0007500!7.23e-08!60;UBERON:0004537!7.23e-08!60;UBERON:0006965!7.23e-08!60;UBERON:0004573!9.64e-08!33;UBERON:0004571!9.64e-08!33 | |ontology_enrichment_uberon=UBERON:0002199!1.74e-26!45;UBERON:0002416!1.74e-26!45;UBERON:0002097!2.71e-26!40;UBERON:0000914!2.68e-20!83;UBERON:0002329!2.68e-20!83;UBERON:0003077!2.68e-20!83;UBERON:0003059!2.68e-20!83;UBERON:0007282!2.68e-20!83;UBERON:0009618!2.68e-20!83;UBERON:0007285!2.68e-20!83;UBERON:0003102!1.02e-17!95;UBERON:0004290!3.05e-17!70;UBERON:0000486!2.40e-14!82;UBERON:0002385!4.19e-12!63;UBERON:0001015!4.19e-12!63;UBERON:0000383!4.19e-12!63;UBERON:0001134!1.40e-11!61;UBERON:0002036!1.40e-11!61;UBERON:0003082!1.40e-11!61;UBERON:0001637!6.93e-10!42;UBERON:0003509!6.93e-10!42;UBERON:0004572!6.93e-10!42;UBERON:0005256!2.99e-09!143;UBERON:0002067!6.40e-09!9;UBERON:0004016!6.40e-09!9;UBERON:0010083!6.40e-09!9;UBERON:0000475!1.74e-08!365;UBERON:0001981!7.23e-08!60;UBERON:0007500!7.23e-08!60;UBERON:0004537!7.23e-08!60;UBERON:0006965!7.23e-08!60;UBERON:0004573!9.64e-08!33;UBERON:0004571!9.64e-08!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0001310;3.19e-17;4!UBERON:0002097;2.89e-10;41!UBERON:0002199;2.74e-08;46!UBERON:0002416;2.74e-08;46!UBERON:0010260;6.07e-08;9!UBERON:0003102;1.80e-07;50 | |ontology_enrichment_uberon_v019=UBERON:0001310;3.19e-17;4!UBERON:0002097;2.89e-10;41!UBERON:0002199;2.74e-08;46!UBERON:0002416;2.74e-08;46!UBERON:0010260;6.07e-08;9!UBERON:0003102;1.80e-07;50 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,3.40e-17,4;UBERON:0002199,5.86e-12,46;UBERON:0002416,5.86e-12,46;UBERON:0002097,9.18e-11,41;UBERON:0010260,6.23e-08,9;UBERON:0001637,6.50e-08,42;UBERON:0003509,6.50e-08,42;UBERON:0004572,6.50e-08,42;UBERON:0003102,2.69e-07,99;UBERON:0002329,3.92e-07,71;UBERON:0003059,3.92e-07,71;UBERON:0007282,3.92e-07,71;UBERON:0004290,3.92e-07,71;UBERON:0009618,3.92e-07,71;UBERON:0003077,5.14e-07,72;UBERON:0007285,5.14e-07,72;UBERON:0007524,6.69e-07,73 | |||
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| ||
|short_description=p26@RGMB | |short_description=p26@RGMB | ||
}} | }} |
Latest revision as of 10:23, 19 September 2015
Short description: | p26@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_RGMB_5end |
Coexpression cluster: | C952_basal_Fibroblast_tenocyte_Hair_Smooth_Preadipocyte_Myoblast |
Association with transcript: | -13bp_to_ENST00000507054_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 3.40e-17 | 4 |
vascular associated smooth muscle cell | 1.22e-10 | 32 |
stromal cell of pancreas | 1.42e-08 | 1 |
skin fibroblast | 3.42e-08 | 23 |
smooth muscle cell | 1.04e-07 | 43 |
smooth muscle myoblast | 1.04e-07 | 43 |
muscle precursor cell | 3.91e-07 | 58 |
myoblast | 3.91e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.91e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
umbilical artery | 3.40e-17 | 4 |
integument | 5.86e-12 | 46 |
integumental system | 5.86e-12 | 46 |
skin of body | 9.18e-11 | 41 |
umbilical blood vessel | 6.23e-08 | 9 |
artery | 6.50e-08 | 42 |
arterial blood vessel | 6.50e-08 | 42 |
arterial system | 6.50e-08 | 42 |
surface structure | 2.69e-07 | 99 |
somite | 3.92e-07 | 71 |
presomitic mesoderm | 3.92e-07 | 71 |
presumptive segmental plate | 3.92e-07 | 71 |
dermomyotome | 3.92e-07 | 71 |
trunk paraxial mesoderm | 3.92e-07 | 71 |
paraxial mesoderm | 5.14e-07 | 72 |
presumptive paraxial mesoderm | 5.14e-07 | 72 |
dense mesenchyme tissue | 6.69e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.67e-14 | 5 |
myotonic disease | 2.67e-14 | 5 |
muscle tissue disease | 2.67e-14 | 5 |
myopathy | 2.67e-14 | 5 |
muscular disease | 2.67e-14 | 5 |
myotonic dystrophy | 2.67e-14 | 5 |
basal cell carcinoma | 3.06e-09 | 1 |