FFCP PHASE1:Hg19::chr12:56236711..56236730,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4327 | |EntrezGene=4327 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7165 | |HGNC=7165 | ||
|TSSclassifier=strong | |||
|UniProt=B4E030,B4DNP3 | |UniProt=B4E030,B4DNP3 | ||
|association_with_transcript=0bp_to_ENST00000409200,ENST00000547487,ENST00000552763_5end | |association_with_transcript=0bp_to_ENST00000409200,ENST00000547487,ENST00000552763_5end | ||
|cluster_id=chr12:56236711..56236730,- | |||
|coexpression_cluster_id=C2220 | |coexpression_cluster_id=C2220 | ||
|description=CAGE_peak_1_at_MMP19_5end | |description=CAGE_peak_1_at_MMP19_5end | ||
|id=chr12:56236711..56236730,- | |id=chr12:56236711..56236730,- | ||
|ontology_enrichment_celltype=CL:0000860;5.09e-19;33!CL:0002057;5.09e-19;33!CL:0000473;6.81e-19;39!CL:0000234;6.81e-19;39!CL:0000576;2.09e-10;48!CL:0000134;2.15e-08;55!CL:0000136;2.49e-08;13!CL:0000723;4.06e-08;61!CL:0000057;8.81e-08;73!CL:0002620;2.08e-07;23!CL:0000048;4.70e-07;58 | |ontology_enrichment_celltype=CL:0000055!2.03e-16!180;CL:0000048!4.74e-16!430;CL:0000057!8.52e-16!75;CL:0000723!2.92e-15!436;CL:0000034!3.53e-14!444;CL:0002194!1.02e-13!63;CL:0000576!1.02e-13!63;CL:0000040!1.02e-13!63;CL:0000559!1.02e-13!63;CL:0002057!2.71e-13!42;CL:0002009!7.04e-13!65;CL:0000860!4.30e-11!45;CL:0000839!1.26e-10!70;CL:0002320!1.71e-10!365;CL:0000557!1.88e-10!71;CL:0002371!2.85e-10!591;CL:0000766!5.71e-10!76;CL:0000144!1.39e-09!625;CL:0000134!4.44e-09!358;CL:0000136!1.09e-08!15;CL:0000680!3.44e-08!57;CL:0000056!3.44e-08!57;CL:0000355!3.44e-08!57;CL:0000187!3.00e-07!54;CL:0000183!5.78e-07!59;CL:0000219!7.23e-07!390 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;5.09e-19;33!CL:0002057;5.09e-19;33!CL:0000473;6.81e-19;39!CL:0000234;6.81e-19;39!CL:0000576;2.09e-10;48!CL:0000134;2.15e-08;55!CL:0000136;2.49e-08;13!CL:0000723;4.06e-08;61!CL:0000057;8.81e-08;73!CL:0002620;2.08e-07;23!CL:0000048;4.70e-07;58 | ||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.58e-23,427;CL:0000723,4.08e-22,433;CL:0000034,2.55e-20,441;CL:0000473,1.95e-19,48;CL:0000234,1.95e-19,48;CL:0002194,7.49e-18,59;CL:0000576,7.49e-18,59;CL:0000040,7.49e-18,59;CL:0000559,7.49e-18,59;CL:0002320,1.49e-17,361;CL:0000057,3.12e-17,76;CL:0002009,1.35e-16,61;CL:0000860,7.16e-16,42;CL:0002057,7.16e-16,42;CL:0000134,1.59e-15,354;CL:0000839,7.62e-14,66;CL:0000557,2.36e-13,67;CL:0000766,2.59e-13,72;CL:0000219,1.71e-11,386;CL:0000136,4.15e-09,15;CL:0000680,1.83e-08,58;CL:0000056,1.83e-08,58;CL:0000355,1.83e-08,58;CL:0000187,2.03e-07,55;CL:0002620,2.06e-07,23 | |||
|ontology_enrichment_development_v019=CL:0002057;2.60e-12;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001013;7.04e-07;14 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.05e-19!167;UBERON:0000914!6.18e-13!83;UBERON:0002329!6.18e-13!83;UBERON:0003077!6.18e-13!83;UBERON:0003059!6.18e-13!83;UBERON:0007282!6.18e-13!83;UBERON:0009618!6.18e-13!83;UBERON:0007285!6.18e-13!83;UBERON:0000468!1.01e-12!659;UBERON:0000926!1.45e-12!448;UBERON:0004120!1.45e-12!448;UBERON:0006603!1.45e-12!448;UBERON:0002371!4.57e-11!80;UBERON:0004290!7.78e-11!70;UBERON:0003081!1.11e-10!216;UBERON:0002384!1.22e-10!375;UBERON:0004765!1.37e-10!101;UBERON:0001434!1.37e-10!101;UBERON:0002405!2.63e-10!115;UBERON:0000467!4.07e-10!625;UBERON:0000480!6.40e-10!626;UBERON:0000486!1.08e-09!82;UBERON:0001474!2.99e-09!86;UBERON:0002385!2.38e-08!63;UBERON:0001015!2.38e-08!63;UBERON:0000383!2.38e-08!63;UBERON:0001134!2.86e-08!61;UBERON:0002036!2.86e-08!61;UBERON:0003082!2.86e-08!61;UBERON:0000479!4.63e-08!787;UBERON:0002193!8.99e-08!112;UBERON:0002199!1.64e-07!45;UBERON:0002416!1.64e-07!45;UBERON:0000062!2.76e-07!511;UBERON:0002390!6.70e-07!102;UBERON:0003061!6.70e-07!102;UBERON:0003102!8.61e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;7.04e-07;14 | |||
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| ||
|short_description=p1@MMP19 | |short_description=p1@MMP19 | ||
}} | }} |
Latest revision as of 08:34, 19 September 2015
Short description: | p1@MMP19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MMP19_5end |
Coexpression cluster: | C2220_CD14_mature_chorionic_adipose_breast_Cardiac_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000409200, ENST00000547487, ENST00000552763_5end |
EntrezGene: | MMP19 |
HGNC: | 7165 |
UniProt: | B4E030B4DNP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.58e-23 | 427 |
somatic stem cell | 4.08e-22 | 433 |
stem cell | 2.55e-20 | 441 |
defensive cell | 1.95e-19 | 48 |
phagocyte | 1.95e-19 | 48 |
monopoietic cell | 7.49e-18 | 59 |
monocyte | 7.49e-18 | 59 |
monoblast | 7.49e-18 | 59 |
promonocyte | 7.49e-18 | 59 |
connective tissue cell | 1.49e-17 | 361 |
fibroblast | 3.12e-17 | 76 |
macrophage dendritic cell progenitor | 1.35e-16 | 61 |
classical monocyte | 7.16e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.16e-16 | 42 |
mesenchymal cell | 1.59e-15 | 354 |
myeloid lineage restricted progenitor cell | 7.62e-14 | 66 |
granulocyte monocyte progenitor cell | 2.36e-13 | 67 |
myeloid leukocyte | 2.59e-13 | 72 |
motile cell | 1.71e-11 | 386 |
fat cell | 4.15e-09 | 15 |
muscle precursor cell | 1.83e-08 | 58 |
myoblast | 1.83e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.83e-08 | 58 |
muscle cell | 2.03e-07 | 55 |
skin fibroblast | 2.06e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 8.39e-24 | 167 |
mesoderm | 2.03e-20 | 315 |
mesoderm-derived structure | 2.03e-20 | 315 |
presumptive mesoderm | 2.03e-20 | 315 |
connective tissue | 5.65e-18 | 371 |
skeletal system | 5.19e-15 | 100 |
skeletal element | 7.33e-15 | 90 |
immune system | 8.91e-15 | 93 |
bone marrow | 2.80e-14 | 76 |
bone element | 1.67e-12 | 82 |
lateral plate mesoderm | 2.57e-12 | 203 |
somite | 3.39e-11 | 71 |
presomitic mesoderm | 3.39e-11 | 71 |
presumptive segmental plate | 3.39e-11 | 71 |
dermomyotome | 3.39e-11 | 71 |
trunk paraxial mesoderm | 3.39e-11 | 71 |
dense mesenchyme tissue | 3.62e-11 | 73 |
paraxial mesoderm | 8.59e-11 | 72 |
presumptive paraxial mesoderm | 8.59e-11 | 72 |
hemolymphoid system | 2.42e-10 | 108 |
hematopoietic system | 7.68e-10 | 98 |
blood island | 7.68e-10 | 98 |
multilaminar epithelium | 2.56e-09 | 83 |
integument | 8.88e-09 | 46 |
integumental system | 8.88e-09 | 46 |
epithelial vesicle | 1.19e-08 | 78 |
muscle tissue | 1.94e-08 | 64 |
musculature | 1.94e-08 | 64 |
musculature of body | 1.94e-08 | 64 |
skeletal muscle tissue | 2.45e-08 | 62 |
striated muscle tissue | 2.45e-08 | 62 |
myotome | 2.45e-08 | 62 |
tissue | 5.88e-08 | 773 |
adipose tissue | 7.15e-07 | 14 |
skin of body | 7.40e-07 | 41 |