FFCP PHASE1:Hg19::chr19:50031567..50031632,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:50031567..50031632,+ to FFCP PHASE1:Hg19::chr19:50031567..50031632,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57333 | |EntrezGene=57333 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21145 | |HGNC=21145 | ||
|TSSclassifier=strong | |||
|UniProt=Q96D15 | |UniProt=Q96D15 | ||
|association_with_transcript=-90bp_to_AF183423_5end | |||
|cluster_id=chr19:50031567..50031632,+ | |||
|coexpression_cluster_id=C750 | |||
|description=CAGE_peak_2_at_RCN3_5end | |||
|id=chr19:50031567..50031632,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.24e-54!180;CL:0000057!1.06e-29!75;CL:0000680!5.42e-28!57;CL:0000056!5.42e-28!57;CL:0000355!5.42e-28!57;CL:0000183!8.97e-28!59;CL:0000187!1.89e-26!54;CL:0000393!1.48e-23!60;CL:0000211!1.48e-23!60;CL:0000192!4.70e-23!42;CL:0000514!4.70e-23!42;CL:0000222!1.14e-22!119;CL:0000359!1.97e-20!32;CL:0000048!2.55e-20!430;CL:0002371!6.04e-20!591;CL:0000723!3.08e-19!436;CL:0000034!7.51e-19!444;CL:0000144!1.15e-18!625;CL:0000548!2.06e-13!679;CL:0000004!2.06e-13!679;CL:0000255!2.06e-13!679;CL:0000012!6.99e-13!682;CL:0002620!1.52e-12!23;CL:0002334!6.64e-09!12;CL:0002494!1.39e-08!16;CL:0000003!4.12e-07!722;CL:0002321!5.41e-07!248;CL:0002539!6.69e-07!10;CL:0000220!7.66e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.47e-23;32!CL:0000192;4.99e-20;43!CL:0000187;1.96e-17;55!CL:0002620;2.58e-15;23!CL:0000057;5.02e-14;73!CL:0000393;2.27e-13;61!CL:0000211;2.27e-13;61!CL:0000134;2.33e-13;55!CL:0000048;3.22e-12;58!CL:0000723;3.90e-12;61!CL:0002320;1.13e-11;188!CL:0002334;9.99e-11;12!CL:0002494;3.06e-09;16!CL:0000034;5.88e-09;69!CL:0002539;4.61e-08;10!CL:0002570;1.16e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.05e-35,76;CL:0000680,1.58e-33,58;CL:0000056,1.58e-33,58;CL:0000355,1.58e-33,58;CL:0000048,2.83e-32,427;CL:0000187,1.30e-31,55;CL:0000723,6.51e-31,433;CL:0000034,3.66e-29,441;CL:0000192,2.64e-28,43;CL:0000514,2.64e-28,43;CL:0000393,1.99e-26,61;CL:0000211,1.99e-26,61;CL:0000359,5.44e-25,32;CL:0000222,4.26e-23,121;CL:0002620,3.44e-15,23;CL:0002320,2.56e-13,361;CL:0000134,1.79e-11,354;CL:0002334,1.12e-10,12;CL:0000219,2.28e-09,386;CL:0002494,2.63e-09,16;CL:0002539,3.40e-08,10;CL:0002570,1.39e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;4.99e-20;43!CL:0000355;2.68e-17;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.64e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.80e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.21e-30!83;UBERON:0002329!6.21e-30!83;UBERON:0003077!6.21e-30!83;UBERON:0003059!6.21e-30!83;UBERON:0007282!6.21e-30!83;UBERON:0009618!6.21e-30!83;UBERON:0007285!6.21e-30!83;UBERON:0004290!9.79e-30!70;UBERON:0002049!1.60e-27!79;UBERON:0007798!1.60e-27!79;UBERON:0004872!1.10e-26!84;UBERON:0001134!5.04e-26!61;UBERON:0002036!5.04e-26!61;UBERON:0003082!5.04e-26!61;UBERON:0002385!4.65e-25!63;UBERON:0001015!4.65e-25!63;UBERON:0000383!4.65e-25!63;UBERON:0000486!1.81e-24!82;UBERON:0004535!2.52e-24!110;UBERON:0001637!7.91e-24!42;UBERON:0003509!7.91e-24!42;UBERON:0004572!7.91e-24!42;UBERON:0001981!1.59e-23!60;UBERON:0007500!1.59e-23!60;UBERON:0004537!1.59e-23!60;UBERON:0006965!1.59e-23!60;UBERON:0000055!2.86e-23!69;UBERON:0001009!3.09e-23!113;UBERON:0004573!3.42e-20!33;UBERON:0004571!3.42e-20!33;UBERON:0005256!3.14e-19!143;UBERON:0003914!2.37e-16!118;UBERON:0000490!1.52e-15!138;UBERON:0002100!8.22e-12!216;UBERON:0000947!3.00e-11!21;UBERON:0010191!3.00e-11!21;UBERON:0002199!6.39e-09!45;UBERON:0002416!6.39e-09!45;UBERON:0000926!5.53e-08!448;UBERON:0004120!5.53e-08!448;UBERON:0006603!5.53e-08!448;UBERON:0002097!5.81e-08!40;UBERON:0000475!7.04e-08!365;UBERON:0000119!9.10e-08!312;UBERON:0000483!2.08e-07!309;UBERON:0003102!2.22e-07!95;UBERON:0000948!3.27e-07!24;UBERON:0005498!3.27e-07!24;UBERON:0004140!3.27e-07!24;UBERON:0009881!3.27e-07!24;UBERON:0004141!3.27e-07!24;UBERON:0003084!3.27e-07!24;UBERON:0007005!3.27e-07!24;UBERON:0004139!3.27e-07!24;UBERON:0004291!3.27e-07!24;UBERON:0003104!4.62e-07!238;UBERON:0009142!4.62e-07!238;UBERON:0004237!6.69e-07!10;UBERON:0004695!6.69e-07!10;UBERON:0002111!6.69e-07!10;UBERON:0004178!6.69e-07!10;UBERON:0000468!9.85e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.91e-20;33!UBERON:0004571;1.91e-20;33!UBERON:0001637;9.77e-20;42!UBERON:0003509;9.77e-20;42!UBERON:0004572;9.77e-20;42!UBERON:0007500;1.04e-14;56!UBERON:0001981;1.04e-14;56!UBERON:0004537;1.04e-14;56!UBERON:0000947;8.23e-12;21!UBERON:0010191;8.23e-12;21!UBERON:0000055;6.33e-11;65!UBERON:0002384;1.02e-10;198!UBERON:0002049;7.25e-10;75!UBERON:0007798;7.25e-10;75!UBERON:0003914;3.77e-09;74!UBERON:0002385;5.32e-09;31!UBERON:0001015;5.32e-09;31!UBERON:0000383;5.32e-09;31!UBERON:0004237;4.61e-08;10!UBERON:0004695;4.61e-08;10!UBERON:0002111;4.61e-08;10!UBERON:0004178;4.61e-08;10!UBERON:0002097;7.67e-08;41!UBERON:0002204;1.12e-07;70!UBERON:0002199;1.49e-07;46!UBERON:0002416;1.49e-07;46!UBERON:0001013;2.06e-07;14!UBERON:0001135;4.84e-07;15 | |||
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| ||
|short_description=p2@RCN3 | |||
}} | }} |
Latest revision as of 08:05, 19 September 2015
Short description: | p2@RCN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RCN3_5end |
Coexpression cluster: | C750_Smooth_Mesenchymal_Fibroblast_Hepatic_Chondrocyte_Lens_tenocyte |
Association with transcript: | -90bp_to_AF183423_5end |
EntrezGene: | RCN3 |
HGNC: | 21145 |
UniProt: | Q96D15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.05e-35 | 76 |
muscle precursor cell | 1.58e-33 | 58 |
myoblast | 1.58e-33 | 58 |
multi-potent skeletal muscle stem cell | 1.58e-33 | 58 |
multi fate stem cell | 2.83e-32 | 427 |
muscle cell | 1.30e-31 | 55 |
somatic stem cell | 6.51e-31 | 433 |
stem cell | 3.66e-29 | 441 |
smooth muscle cell | 2.64e-28 | 43 |
smooth muscle myoblast | 2.64e-28 | 43 |
electrically responsive cell | 1.99e-26 | 61 |
electrically active cell | 1.99e-26 | 61 |
vascular associated smooth muscle cell | 5.44e-25 | 32 |
mesodermal cell | 4.26e-23 | 121 |
skin fibroblast | 3.44e-15 | 23 |
connective tissue cell | 2.56e-13 | 361 |
mesenchymal cell | 1.79e-11 | 354 |
preadipocyte | 1.12e-10 | 12 |
motile cell | 2.28e-09 | 386 |
cardiocyte | 2.63e-09 | 16 |
aortic smooth muscle cell | 3.40e-08 | 10 |
mesenchymal stem cell of adipose | 1.39e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.80e-08 | 14 |