FFCP PHASE1:Hg19::chr22:22900001..22900057,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:22900001..22900057,-
|short_description=p2@PRAME
|description=CAGE_peak_2_at_PRAME_5end
|association_with_transcript=0bp_to_ENST00000442481,uc002zwf.2,uc0...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23532 | |EntrezGene=23532 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9336 | |HGNC=9336 | ||
|TSSclassifier=strong | |||
|UniProt=F8WF80 | |UniProt=F8WF80 | ||
|association_with_transcript=0bp_to_ENST00000442481,uc002zwf.2,uc010gtr.2_5end | |||
|cluster_id=chr22:22900001..22900057,- | |||
|coexpression_cluster_id=C93 | |||
|description=CAGE_peak_2_at_PRAME_5end | |||
|id=chr22:22900001..22900057,- | |||
|ontology_enrichment_celltype=CL:0000039!5.31e-07!7;CL:0000586!5.31e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002573;4.20e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,4.27e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.24e-11;10!UBERON:0005564;1.24e-11;10 | |||
|ontology_enrichment_disease=DOID:14566!1.44e-19!239;DOID:162!5.04e-18!235;DOID:0050687!2.85e-12!143;DOID:1036!7.15e-10!8;DOID:0050686!3.53e-09!137;DOID:1115!9.11e-09!20;DOID:1909!9.22e-08!2;DOID:3095!2.43e-07!22;DOID:2994!2.43e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:1909;2.34e-11;2!DOID:1115;4.56e-11;20!DOID:1036;1.68e-10;8!DOID:201;7.66e-08;6!DOID:0060100;7.66e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.36e-17,239;DOID:162,1.38e-15,235;DOID:1909,2.34e-11,2;DOID:0050687,2.47e-11,143;DOID:1115,4.52e-11,20;DOID:1036,1.68e-10,8;DOID:0050686,1.52e-08,137;DOID:201,7.66e-08,6;DOID:0060100,7.66e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.29e-09!8;UBERON:0001905!7.10e-07!2;UBERON:0002757!7.10e-07!2;UBERON:0010134!7.10e-07!2;UBERON:0002784!7.10e-07!2;UBERON:0005408!7.10e-07!2;UBERON:0001899!7.10e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.04e-10;2!UBERON:0002757;5.04e-10;2!UBERON:0010134;5.04e-10;2!UBERON:0005408;5.04e-10;2!UBERON:0001899;5.04e-10;2!UBERON:0000473;1.84e-09;8!UBERON:0003135;6.64e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.80e-10,2;UBERON:0002757,5.80e-10,2;UBERON:0010134,5.80e-10,2;UBERON:0005408,5.80e-10,2;UBERON:0001899,5.80e-10,2;UBERON:0000473,1.76e-09,8;UBERON:0003135,6.43e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.78073625566651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.932949495138334,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,17.7048282223516,0,0.677167111206413,11.8835175576738,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,12.8642153054484,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,27.5555968338,0,0,0.0915975934018623,0,0,0,0,262.142157637164,248.411230980576,297.883316882121,19.5446344705911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82433626655182,0,0,0,0,0,0,0,0,0,63.2796428378057,0,6.71505430769079,4.57043606916876,0,0,0,0,0,0,36.7662473692589,2.9171149636534,0,15.0345568034173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,6.79872549120754,0,0,0,0,3.59282359557092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,226.200018120737,0.249960815924213,127.233609617443,89.6361147331198,0,0,76.0835400206832,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,60.4940376266272,0,0.943595651135378,0,0,0,1.36329340684902,0,0,0,31.2222591831333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7818775599833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67850917939143,1.00885116665647,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,66.2077033160124,0,53.5483478691945,0,1.45051314914126,0,0,0,3.78662402337809,4.17545683319873,0,0,0,0,64.093162420135,0,0,0,0,0,0,0,0,28.0651414235062,0,121.594211520445,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,64.3707973748193,0,0,0,0,0,0,0,0.109265571963696,0,0.305966489225945,1.3360870263278,1.47031839255752,0,10.0027881648076,14.2020988982775,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1001729976458,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.78073625566651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.932949495138334,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,17.7048282223516,0,0.677167111206413,11.8835175576738,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,12.8642153054484,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,27.5555968338,0,0,0.0915975934018623,0,0,0,0,262.142157637164,248.411230980576,297.883316882121,19.5446344705911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.82433626655182,0,0,0,0,0,0,0,0,0,63.2796428378057,0,6.71505430769079,4.57043606916876,0,0,0,0,0,0,36.7662473692589,2.9171149636534,0,15.0345568034173,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,6.79872549120754,0,0,0,0,3.59282359557092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,226.200018120737,0.249960815924213,127.233609617443,89.6361147331198,0,0,76.0835400206832,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,60.4940376266272,0,0.943595651135378,0,0,0,1.36329340684902,0,0,0,31.2222591831333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7818775599833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67850917939143,1.00885116665647,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,66.2077033160124,0,53.5483478691945,0,1.45051314914126,0,0,0,3.78662402337809,4.17545683319873,0,0,0,0,64.093162420135,0,0,0,0,0,0,0,0,28.0651414235062,0,121.594211520445,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,64.3707973748193,0,0,0,0,0,0,0,0.109265571963696,0,0.305966489225945,1.3360870263278,1.47031839255752,0,10.0027881648076,14.2020988982775,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1001729976458,0.406896178315738,0,0,0 | ||
|short_description=p2@PRAME | |||
}} | }} |
Latest revision as of 07:43, 19 September 2015
Short description: | p2@PRAME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PRAME_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 0bp_to_ENST00000442481, uc002zwf.2, uc010gtr.2_5end |
EntrezGene: | PRAME |
HGNC: | 9336 |
UniProt: | F8WF80 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 4.27e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pineal body | 5.80e-10 | 2 |
regional part of epithalamus | 5.80e-10 | 2 |
secretory circumventricular organ | 5.80e-10 | 2 |
circumventricular organ | 5.80e-10 | 2 |
epithalamus | 5.80e-10 | 2 |
testis | 1.76e-09 | 8 |
male reproductive organ | 6.43e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.36e-17 | 239 |
cancer | 1.38e-15 | 235 |
melanoma | 2.34e-11 | 2 |
cell type cancer | 2.47e-11 | 143 |
sarcoma | 4.52e-11 | 20 |
chronic leukemia | 1.68e-10 | 8 |
organ system cancer | 1.52e-08 | 137 |
connective tissue cancer | 7.66e-08 | 6 |
musculoskeletal system cancer | 7.66e-08 | 6 |