FFCP PHASE1:Hg19::chr14:23000807..23000874,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr14:23000807..23000874,+
|short_description=p1@TRAJ12
|description=CAGE_peak_1_at_TRAJ12_5end
|association_with_transcript=-14bp_to_ENST00000390525_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12040 | |HGNC=12040 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000390525_5end | |||
|cluster_id=chr14:23000807..23000874,+ | |||
|coexpression_cluster_id=C36 | |||
|description=CAGE_peak_1_at_TRAJ12_5end | |||
|id=chr14:23000807..23000874,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.33e-57!53;CL:0000051!3.33e-57!53;CL:0000838!4.48e-56!52;CL:0002087!4.64e-37!119;CL:0000738!2.70e-34!140;CL:0000945!6.92e-31!24;CL:0000826!6.92e-31!24;CL:0002031!1.74e-29!124;CL:0000791!6.26e-25!18;CL:0000789!6.26e-25!18;CL:0002420!6.26e-25!18;CL:0002419!6.26e-25!18;CL:0000790!6.26e-25!18;CL:0000988!1.52e-24!182;CL:0000037!4.81e-24!172;CL:0000566!4.81e-24!172;CL:0002032!7.50e-23!165;CL:0000837!7.50e-23!165;CL:0000084!1.22e-22!25;CL:0000827!1.22e-22!25;CL:0000236!1.52e-18!14;CL:0000625!3.09e-16!11;CL:0000624!2.78e-09!6;CL:0000080!1.05e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.51e-42;24!CL:0000542;2.89e-40;53!CL:0000791;1.48e-32;18!CL:0000789;1.48e-32;18!CL:0002419;1.48e-32;18!CL:0000084;6.02e-28;25!CL:0000625;2.33e-23;11!CL:0000236;1.18e-21;13!CL:0000624;5.37e-13;6!CL:0002087;1.87e-10;104!CL:0000898;9.83e-08;3!CL:0000226;8.00e-07;3!CL:0000842;8.00e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.77e-71,52;CL:0000542,6.85e-70,53;CL:0000051,6.85e-70,53;CL:0000945,1.44e-42,24;CL:0000826,1.44e-42,24;CL:0002087,2.58e-34,115;CL:0000791,8.73e-33,18;CL:0000789,8.73e-33,18;CL:0002420,8.73e-33,18;CL:0002419,8.73e-33,18;CL:0000790,8.73e-33,18;CL:0000084,4.39e-28,25;CL:0000827,4.39e-28,25;CL:0002031,7.85e-28,120;CL:0000738,5.19e-27,136;CL:0000236,7.15e-24,14;CL:0000625,1.67e-23,11;CL:0000988,6.41e-21,177;CL:0000037,1.95e-19,168;CL:0002032,1.13e-17,161;CL:0000837,1.13e-17,161;CL:0000624,4.25e-13,6;CL:0000898,9.27e-08,3;CL:0000226,7.75e-07,3;CL:0000842,7.75e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;2.89e-40;53!CL:0000790;1.48e-32;18 | |||
|ontology_enrichment_disease=DOID:0060058!1.97e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;4.15e-11;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,4.50e-11,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.42e-17!15;UBERON:0000179!2.42e-17!15;UBERON:0000463!2.42e-17!15;UBERON:0004177!1.19e-10!7;UBERON:0002390!3.19e-08!102;UBERON:0003061!3.19e-08!102;UBERON:0002193!4.53e-08!112;UBERON:0007023!5.89e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.99e-25;15!UBERON:0000179;1.99e-25;15!UBERON:0000463;1.99e-25;15!UBERON:0002390;4.16e-19;32!UBERON:0002193;3.86e-12;42!UBERON:0004177;6.16e-12;5!UBERON:0005057;6.16e-12;5!UBERON:0002106;3.71e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.14e-25,15;UBERON:0000179,2.14e-25,15;UBERON:0000463,2.14e-25,15;UBERON:0004177,1.45e-11,7;UBERON:0005057,1.45e-11,7;UBERON:0002106,4.14e-08,3;UBERON:0004854,4.14e-08,3;UBERON:0009034,4.14e-08,3;UBERON:0002095,4.14e-08,3;UBERON:0004782,4.14e-08,3;UBERON:0003281,4.14e-08,3;UBERON:0009664,4.14e-08,3;UBERON:0002296,4.14e-08,3;UBERON:0005602,4.14e-08,3;UBERON:0001179,4.14e-08,3;UBERON:0006293,4.14e-08,3 | |||
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| ||
|short_description=p1@TRAJ12 | |||
}} | }} |
Latest revision as of 06:32, 19 September 2015
Short description: | p1@TRAJ12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAJ12_5end |
Coexpression cluster: | C36_B_b_splenic_plasma_xeroderma_adrenal_Burkitt |
Association with transcript: | -14bp_to_ENST00000390525_5end |
EntrezGene: | NA |
HGNC: | 12040 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.77e-71 | 52 |
lymphocyte | 6.85e-70 | 53 |
common lymphoid progenitor | 6.85e-70 | 53 |
lymphocyte of B lineage | 1.44e-42 | 24 |
pro-B cell | 1.44e-42 | 24 |
nongranular leukocyte | 2.58e-34 | 115 |
mature alpha-beta T cell | 8.73e-33 | 18 |
alpha-beta T cell | 8.73e-33 | 18 |
immature T cell | 8.73e-33 | 18 |
mature T cell | 8.73e-33 | 18 |
immature alpha-beta T cell | 8.73e-33 | 18 |
T cell | 4.39e-28 | 25 |
pro-T cell | 4.39e-28 | 25 |
hematopoietic lineage restricted progenitor cell | 7.85e-28 | 120 |
leukocyte | 5.19e-27 | 136 |
B cell | 7.15e-24 | 14 |
CD8-positive, alpha-beta T cell | 1.67e-23 | 11 |
hematopoietic cell | 6.41e-21 | 177 |
hematopoietic stem cell | 1.95e-19 | 168 |
hematopoietic oligopotent progenitor cell | 1.13e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.13e-17 | 161 |
CD4-positive, alpha-beta T cell | 4.25e-13 | 6 |
naive T cell | 9.27e-08 | 3 |
single nucleate cell | 7.75e-07 | 3 |
mononuclear cell | 7.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.14e-25 | 15 |
haemolymphatic fluid | 2.14e-25 | 15 |
organism substance | 2.14e-25 | 15 |
hemopoietic organ | 1.45e-11 | 7 |
immune organ | 1.45e-11 | 7 |
spleen | 4.14e-08 | 3 |
gastrointestinal system mesentery | 4.14e-08 | 3 |
stomach region | 4.14e-08 | 3 |
mesentery | 4.14e-08 | 3 |
gastrointestinal system serosa | 4.14e-08 | 3 |
mesentery of stomach | 4.14e-08 | 3 |
gut mesentery | 4.14e-08 | 3 |
dorsal mesentery | 4.14e-08 | 3 |
dorsal mesogastrium | 4.14e-08 | 3 |
peritoneal cavity | 4.14e-08 | 3 |
spleen primordium | 4.14e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 4.50e-11 | 10 |