FFCP PHASE1:Hg19::chr14:22989368..22989413,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12052 | |HGNC=12052 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390514,uc001wfr.1,uc010ajz.1_5end | |association_with_transcript=0bp_to_ENST00000390514,uc001wfr.1,uc010ajz.1_5end | ||
|cluster_id=chr14:22989368..22989413,+ | |||
|description=CAGE_peak_1_at_TRAJ23_5end | |description=CAGE_peak_1_at_TRAJ23_5end | ||
|id=chr14:22989368..22989413,+ | |id=chr14:22989368..22989413,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.56e-10!18;CL:0000789!1.56e-10!18;CL:0002420!1.56e-10!18;CL:0002419!1.56e-10!18;CL:0000790!1.56e-10!18;CL:0000625!1.91e-08!11;CL:0000084!9.44e-08!25;CL:0000827!9.44e-08!25 | |ontology_enrichment_celltype=CL:0000791!1.56e-10!18;CL:0000789!1.56e-10!18;CL:0002420!1.56e-10!18;CL:0002419!1.56e-10!18;CL:0000790!1.56e-10!18;CL:0000625!1.91e-08!11;CL:0000084!9.44e-08!25;CL:0000827!9.44e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0002166;5.93e-08;3!CL:0002621;1.15e-07;3!CL:0000064;1.51e-07;3!CL:0000067;1.51e-07;3!CL:0005012;1.51e-07;3!CL:0002304;1.51e-07;3!CL:0000791;4.90e-07;18!CL:0000789;4.90e-07;18!CL:0002419;4.90e-07;18 | |ontology_enrichment_celltype_v019=CL:0002166;5.93e-08;3!CL:0002621;1.15e-07;3!CL:0000064;1.51e-07;3!CL:0000067;1.51e-07;3!CL:0005012;1.51e-07;3!CL:0002304;1.51e-07;3!CL:0000791;4.90e-07;18!CL:0000789;4.90e-07;18!CL:0002419;4.90e-07;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0002166,6.06e-08,3;CL:0002621,1.05e-07,3;CL:0000064,1.31e-07,3;CL:0000067,1.31e-07,3;CL:0005012,1.31e-07,3;CL:0002304,1.31e-07,3;CL:0000791,6.20e-07,18;CL:0000789,6.20e-07,18;CL:0002420,6.20e-07,18;CL:0002419,6.20e-07,18;CL:0000790,6.20e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;4.90e-07;18 | |ontology_enrichment_development_v019=CL:0000790;4.90e-07;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.56e-14!129;UBERON:0007811!1.56e-14!129;UBERON:0000033!3.91e-14!123;UBERON:0003056!1.04e-11!61;UBERON:0001869!4.23e-09!32;UBERON:0001893!8.13e-09!34;UBERON:0003075!8.56e-09!86;UBERON:0007284!8.56e-09!86;UBERON:0002780!1.15e-08!41;UBERON:0001890!1.15e-08!41;UBERON:0006240!1.15e-08!41;UBERON:0004121!1.15e-08!169;UBERON:0000924!1.73e-08!173;UBERON:0006601!1.73e-08!173;UBERON:0002346!1.93e-08!90;UBERON:0002791!2.64e-08!33;UBERON:0003080!2.89e-08!42;UBERON:0001017!1.28e-07!82;UBERON:0005743!1.49e-07!86;UBERON:0002020!3.11e-07!34;UBERON:0003528!3.11e-07!34;UBERON:0002616!3.49e-07!59;UBERON:0000955!4.60e-07!69;UBERON:0006238!4.60e-07!69 | |ontology_enrichment_uberon=UBERON:0000153!1.56e-14!129;UBERON:0007811!1.56e-14!129;UBERON:0000033!3.91e-14!123;UBERON:0003056!1.04e-11!61;UBERON:0001869!4.23e-09!32;UBERON:0001893!8.13e-09!34;UBERON:0003075!8.56e-09!86;UBERON:0007284!8.56e-09!86;UBERON:0002780!1.15e-08!41;UBERON:0001890!1.15e-08!41;UBERON:0006240!1.15e-08!41;UBERON:0004121!1.15e-08!169;UBERON:0000924!1.73e-08!173;UBERON:0006601!1.73e-08!173;UBERON:0002346!1.93e-08!90;UBERON:0002791!2.64e-08!33;UBERON:0003080!2.89e-08!42;UBERON:0001017!1.28e-07!82;UBERON:0005743!1.49e-07!86;UBERON:0002020!3.11e-07!34;UBERON:0003528!3.11e-07!34;UBERON:0002616!3.49e-07!59;UBERON:0000955!4.60e-07!69;UBERON:0006238!4.60e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0000369;5.43e-10;4!UBERON:0002435;5.43e-10;4!UBERON:0000204;5.43e-10;4!UBERON:0000488;1.50e-09;4!UBERON:0001801;3.43e-09;14!UBERON:0010371;1.22e-08;31!UBERON:0005383;6.49e-08;3!UBERON:0005382;6.49e-08;3!UBERON:0001949;1.15e-07;3!UBERON:0001778;1.51e-07;3!UBERON:0001775;1.51e-07;3!UBERON:0007625;6.98e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0000369;5.43e-10;4!UBERON:0002435;5.43e-10;4!UBERON:0000204;5.43e-10;4!UBERON:0000488;1.50e-09;4!UBERON:0001801;3.43e-09;14!UBERON:0010371;1.22e-08;31!UBERON:0005383;6.49e-08;3!UBERON:0005382;6.49e-08;3!UBERON:0001949;1.15e-07;3!UBERON:0001778;1.51e-07;3!UBERON:0001775;1.51e-07;3!UBERON:0007625;6.98e-07;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,5.03e-10,4;UBERON:0002435,5.03e-10,4;UBERON:0000204,5.03e-10,4;UBERON:0010082,5.03e-10,4;UBERON:0000033,1.17e-09,56;UBERON:0000488,1.29e-09,4;UBERON:0001801,2.98e-09,14;UBERON:0000153,3.07e-09,62;UBERON:0007811,3.07e-09,62;UBERON:0010314,4.31e-08,132;UBERON:0005383,6.20e-08,3;UBERON:0005382,6.20e-08,3;UBERON:0001949,1.05e-07,3;UBERON:0001778,1.31e-07,3;UBERON:0001775,1.31e-07,3;UBERON:0010371,4.77e-07,104;UBERON:0007625,6.08e-07,11;UBERON:0004121,6.78e-07,171;UBERON:0000924,6.78e-07,171;UBERON:0006601,6.78e-07,171;UBERON:0001444,9.00e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0.602694528023977,2.19093027116212,0,2.33930010345897,0.204000691244253,5.95563970808367,0.572471974262113,0.547497700291537,1.00434111675842,0,0.0821005894499457,0.157421562627358,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,1.17903228824749,1.23360899399706,2.67498392625085,1.30368906653436,1.89379122293893,1.94826728407911,2.00538822393312,0.589211814949674,0.664601683750863,1.62482318259009,0.640456598628376,1.1705341280389,2.95988228286617,1.10540007114339,3.47763702882063,1.03800594213442,1.33770414044857,2.09071047609954,2.26618685395132,0.383220493601921,1.03088233644789,1.77113784413652,0.637130828648193,1.30216690771284,1.90090408889675,1.35517607169996,2.17577238962511,1.24930726552346,1.18388626022008,0.821127996921047,0.403213486449465,0.534880391567015,0.724122019413995,0,0,0.383587685530591,0,0,0.144846518960824,0,0,2.26883561193763,6.20842312895179,2.98638271356629,0,3.27865759463288,3.70784442784429,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,1.39133685156694,0.860234595106124,0,0,1.67799774483962,1.10047216776027,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0.81014194788176,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,5.33744978648525,2.71334303258876,0,0.808264032418128,0,2.27036141467397,0,0.468642863667593,0,0,0.149448680551801,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,3.07284334616587,1.83892677479412,0.300476117813194,1.58805056424029,0,0.213557388818567,0,0,0.103052529238439,0,0.18611685633159,0,0,0,0,0,0,0.10075209822764,0,2.51239109112286,4.36393792945335,4.30206893083506,0,0,0,0,0,0,0,1.92972281457866,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,4.20725321410337,0,0,0,0,0,0,0,3.60292401626904,0,0,0,7.22189872236531,0,0,2.88662684050547,0.463721619900307,3.40485213283883,0.144366447761074,0,0,0,0,0.246217006087397,5.14809383306323,0,4.68669169933885,4.19955320497149,5.2456785979683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672786506072164,0,1.10007428731425,0,0,1.690605505112,0.26593811658487,0,0,0,0,0,0,0,0.65147236858747,0,0,0,0,0,3.64871341923571,0,4.21667878966063,0.239624855491583,0,1.42636905040718,0,0,0,0,0.394061520403854,0.646882724578552,0,1.27047312111232,0,2.31986643833309,0.837581326671744,1.91381625495949,0,2.99161459204025,0,0,0,0,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0,0,0.587403472388222,0,0.413536052245775,0,0.320182673410333,0,0,0,0.248107807818777,0,0,0,0,0,0,0.308419387605311,0,0,0,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,0,0.0915694648183434,0,0.574265537996172,1.30012049207304,0,0.096670718292122,0.308097234229289,0,0.137836572484531,0.214840489736547,0,0,0.534192213880424,0,0,0.510450849978337,0,0,0,0,0.308033580176089,0,0.869932992075073,2.03856641014312,0.429374660225974,0.372158369359667,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0,0.606547444719948,0,0.421258456238981,0,0,0,0,0,0,0.551365343546124,0,0,0.578775534266688,0,0.608731130888112,0.6196469961995,0.281695602532241,0,0,0.35667105148125,1.06428319221179,0,0,0.379473173765715,0,0,0.670302275535787,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,1.58625035258854,0,0,0,0,0,0,0,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9488432172667,0,0,0,0,0,0.879049075631364,0,0.111443384277478,0,0,0,0,0.994147647766298,4.22008249231538,5.12020043105367,0,1.05562704063997,0,0.276283915531148,0,0.306806047506464,0,0,0,0,0,0.295930216910801,0,0,0,1.39152147242777,0,0,0,0,0,0,0,0,0,0,2.65722415744152,10.9742759149121,0,0,0,1.31631238292384,0,0.41827123283581,0,0.227884111694002,0,0,0,0,1.83195186803725,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0,3.74823113160543,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.678923115418936,0,0.451961481561065,1.37041924646751,0,0.379864775735272,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0.788662062837943,0.279282401272254,0,0,0,0,0,0.134366944973453,1.08089965062721,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,1.09349201984444,0,0,0.0524545881349981,0,0,0,0,0,0,0.542999601753713,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0.610131324509816,0.500763722825999,0,0,0,0.276697269872462,0.249960815924213,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0.189403005275089,0.251567901752575,0,0,0,0.15543720058278,0.887130899937803,0.796483835818512,0,0.465788870628778,0.414706207840855,1.06336685823198,0,0,0,0.813741466409323,1.45478927362048,0.214821114084977,0,0,1.60011105865261,0,0.336749488765919,15.1421877874381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,1.31043939538565,0,0,0,0,0,0,0,0,1.86623178009892,0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| ||
|short_description=p1@TRAJ23 | |short_description=p1@TRAJ23 | ||
}} | }} |
Latest revision as of 06:26, 19 September 2015
Short description: | p1@TRAJ23 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAJ23_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000390514, uc001wfr.1, uc010ajz.1_5end |
EntrezGene: | NA |
HGNC: | 12052 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 6.06e-08 | 3 |
gingival epithelial cell | 1.05e-07 | 3 |
ciliated cell | 1.31e-07 | 3 |
ciliated epithelial cell | 1.31e-07 | 3 |
multi-ciliated epithelial cell | 1.31e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.31e-07 | 3 |
mature alpha-beta T cell | 6.20e-07 | 18 |
alpha-beta T cell | 6.20e-07 | 18 |
immature T cell | 6.20e-07 | 18 |
mature T cell | 6.20e-07 | 18 |
immature alpha-beta T cell | 6.20e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 5.03e-10 | 4 |
striatum | 5.03e-10 | 4 |
ventral part of telencephalon | 5.03e-10 | 4 |
future corpus striatum | 5.03e-10 | 4 |
head | 1.17e-09 | 56 |
atypical epithelium | 1.29e-09 | 4 |
anterior segment of eyeball | 2.98e-09 | 14 |
anterior region of body | 3.07e-09 | 62 |
craniocervical region | 3.07e-09 | 62 |
structure with developmental contribution from neural crest | 4.31e-08 | 132 |
caudate-putamen | 6.20e-08 | 3 |
dorsal striatum | 6.20e-08 | 3 |
gingival epithelium | 1.05e-07 | 3 |
ciliary epithelium | 1.31e-07 | 3 |
ciliary body | 1.31e-07 | 3 |
ecto-epithelium | 4.77e-07 | 104 |
pigment epithelium of eye | 6.08e-07 | 11 |
ectoderm-derived structure | 6.78e-07 | 171 |
ectoderm | 6.78e-07 | 171 |
presumptive ectoderm | 6.78e-07 | 171 |
subdivision of head | 9.00e-07 | 49 |