FFCP PHASE1:Hg19::chr3:57234000..57234014,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8820 | |EntrezGene=8820 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4877 | |HGNC=4877 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UBX0 | |UniProt=Q9UBX0 | ||
|association_with_transcript=-17bp_to_ENST00000295934_5end | |association_with_transcript=-17bp_to_ENST00000295934_5end | ||
|cluster_id=chr3:57234000..57234014,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_HESX1_5end | |description=CAGE_peak_1_at_HESX1_5end | ||
|id=chr3:57234000..57234014,- | |id=chr3:57234000..57234014,- | ||
|ontology_enrichment_celltype=CL:0002322!1.79e-42!5;CL:0000039!1.94e-19!7;CL:0000586!1.94e-19!7;CL:0000540!1.18e-13!6;CL:0000031!1.18e-13!6;CL:0000404!1.18e-13!6;CL:0000047!2.27e-10!8;CL:0000148!3.38e-08!10;CL:0000541!3.38e-08!10 | |ontology_enrichment_celltype=CL:0002322!1.79e-42!5;CL:0000039!1.94e-19!7;CL:0000586!1.94e-19!7;CL:0000540!1.18e-13!6;CL:0000031!1.18e-13!6;CL:0000404!1.18e-13!6;CL:0000047!2.27e-10!8;CL:0000148!3.38e-08!10;CL:0000541!3.38e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0002322;5.09e-66;5!CL:0000039;4.13e-30;7!CL:0000586;4.13e-30;7!CL:0002321;3.97e-22;15!CL:0000540;5.95e-21;6!CL:0000404;5.95e-21;6!CL:0000148;1.65e-12;10!CL:0000147;4.24e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.76e-66,5;CL:0000039,4.13e-30,7;CL:0000586,4.13e-30,7;CL:0000540,5.95e-21,6;CL:0000031,5.95e-21,6;CL:0000404,5.95e-21,6;CL:0000047,7.00e-16,8;CL:0000148,1.62e-12,10;CL:0000541,1.62e-12,10;CL:0000147,4.19e-09,14;CL:0000133,1.35e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.32e-21;10!UBERON:0005564;3.32e-21;10!CL:0000031;5.95e-21;6 | |||
|ontology_enrichment_disease=DOID:3095!2.93e-13!22;DOID:2994!2.93e-13!22;DOID:2355!2.46e-09!1;DOID:5409!4.06e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.04e-15;22!DOID:2994;7.04e-15;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.04e-15,22;DOID:2994,7.04e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.85e-17!8;UBERON:0003135!1.88e-12!11;UBERON:0000991!7.88e-10!21;UBERON:0009196!7.88e-10!21;UBERON:0009117!7.88e-10!21;UBERON:0005564!7.88e-10!21;UBERON:0004176!2.25e-09!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.10e-26;8!UBERON:0003135;2.59e-19;11!UBERON:0000922;4.00e-13;49!UBERON:0000991;2.91e-10;21!UBERON:0003101;8.30e-10;22!UBERON:0000079;8.30e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.10e-26,8;UBERON:0003135,2.59e-19,11;UBERON:0000991,2.91e-10,21;UBERON:0009196,2.91e-10,21;UBERON:0009117,2.91e-10,21;UBERON:0005564,2.91e-10,21;UBERON:0004176,8.30e-10,22;UBERON:0003101,8.30e-10,22;UBERON:0000079,8.30e-10,22 | |||
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|short_description=p1@HESX1 | |short_description=p1@HESX1 | ||
}} | }} |
Latest revision as of 04:05, 19 September 2015
Short description: | p1@HESX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HESX1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -17bp_to_ENST00000295934_5end |
EntrezGene: | HESX1 |
HGNC: | 4877 |
UniProt: | Q9UBX0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.76e-66 | 5 |
germ line cell | 4.13e-30 | 7 |
germ cell | 4.13e-30 | 7 |
neuron | 5.95e-21 | 6 |
neuroblast | 5.95e-21 | 6 |
electrically signaling cell | 5.95e-21 | 6 |
neuronal stem cell | 7.00e-16 | 8 |
melanocyte | 1.62e-12 | 10 |
melanoblast | 1.62e-12 | 10 |
pigment cell | 4.19e-09 | 14 |
neurectodermal cell | 1.35e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 2.10e-26 | 8 |
male reproductive organ | 2.59e-19 | 11 |
gonad | 2.91e-10 | 21 |
indifferent external genitalia | 2.91e-10 | 21 |
indifferent gonad | 2.91e-10 | 21 |
gonad primordium | 2.91e-10 | 21 |
external genitalia | 8.30e-10 | 22 |
male organism | 8.30e-10 | 22 |
male reproductive system | 8.30e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.04e-15 | 22 |
germ cell cancer | 7.04e-15 | 22 |