FFCP PHASE1:Hg19::chr3:54962252..54962267,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57408 | |EntrezGene=57408 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25023 | |HGNC=25023 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HBL6 | |UniProt=Q9HBL6 | ||
|association_with_transcript=-151bp_to_ENST00000273286_5end | |association_with_transcript=-151bp_to_ENST00000273286_5end | ||
|cluster_id=chr3:54962252..54962267,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_3_at_LRTM1_5end | |description=CAGE_peak_3_at_LRTM1_5end | ||
|id=chr3:54962252..54962267,- | |id=chr3:54962252..54962267,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.38e-09;2!UBERON:0010056;1.38e-09;2!UBERON:0003056;7.49e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!6.38e-24!2;UBERON:0002757!6.38e-24!2;UBERON:0010134!6.38e-24!2;UBERON:0002784!6.38e-24!2;UBERON:0005408!6.38e-24!2;UBERON:0001899!6.38e-24!2;UBERON:0000341!2.23e-23!2;UBERON:0003127!1.07e-22!2;UBERON:0001723!4.63e-16!3;UBERON:0001033!4.63e-16!3;UBERON:0010056!4.63e-16!3;UBERON:0002426!1.57e-12!1;UBERON:0003831!1.57e-12!1;UBERON:0003898!1.57e-12!1;UBERON:0004830!1.57e-12!1;UBERON:0001774!1.57e-12!1;UBERON:0003830!1.57e-12!1;UBERON:0005175!1.57e-12!1;UBERON:0003897!1.57e-12!1;UBERON:0001103!1.57e-12!1;UBERON:0010084!1.57e-12!1;UBERON:0003296!1.86e-12!4;UBERON:0010133!1.86e-12!4;UBERON:0001301!3.45e-12!1;UBERON:0000020!4.12e-12!23;UBERON:0001032!1.33e-11!24;UBERON:0004456!1.33e-11!24;UBERON:0000966!8.88e-10!5;UBERON:0005388!8.88e-10!5;UBERON:0001802!8.88e-10!5;UBERON:0001894!1.72e-07!7;UBERON:0006222!1.72e-07!7;UBERON:0008814!2.89e-07!15;UBERON:0003126!3.79e-07!7;UBERON:0001005!3.79e-07!7;UBERON:0001630!6.80e-07!2;UBERON:0005090!6.80e-07!2;UBERON:0002360!8.52e-07!2;UBERON:0000094!8.52e-07!2;UBERON:0007645!8.52e-07!2 | |ontology_enrichment_uberon=UBERON:0001905!6.38e-24!2;UBERON:0002757!6.38e-24!2;UBERON:0010134!6.38e-24!2;UBERON:0002784!6.38e-24!2;UBERON:0005408!6.38e-24!2;UBERON:0001899!6.38e-24!2;UBERON:0000341!2.23e-23!2;UBERON:0003127!1.07e-22!2;UBERON:0001723!4.63e-16!3;UBERON:0001033!4.63e-16!3;UBERON:0010056!4.63e-16!3;UBERON:0002426!1.57e-12!1;UBERON:0003831!1.57e-12!1;UBERON:0003898!1.57e-12!1;UBERON:0004830!1.57e-12!1;UBERON:0001774!1.57e-12!1;UBERON:0003830!1.57e-12!1;UBERON:0005175!1.57e-12!1;UBERON:0003897!1.57e-12!1;UBERON:0001103!1.57e-12!1;UBERON:0010084!1.57e-12!1;UBERON:0003296!1.86e-12!4;UBERON:0010133!1.86e-12!4;UBERON:0001301!3.45e-12!1;UBERON:0000020!4.12e-12!23;UBERON:0001032!1.33e-11!24;UBERON:0004456!1.33e-11!24;UBERON:0000966!8.88e-10!5;UBERON:0005388!8.88e-10!5;UBERON:0001802!8.88e-10!5;UBERON:0001894!1.72e-07!7;UBERON:0006222!1.72e-07!7;UBERON:0008814!2.89e-07!15;UBERON:0003126!3.79e-07!7;UBERON:0001005!3.79e-07!7;UBERON:0001630!6.80e-07!2;UBERON:0005090!6.80e-07!2;UBERON:0002360!8.52e-07!2;UBERON:0000094!8.52e-07!2;UBERON:0007645!8.52e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.11e-34;2!UBERON:0002757;1.11e-34;2!UBERON:0010134;1.11e-34;2!UBERON:0005408;1.11e-34;2!UBERON:0001899;1.11e-34;2!UBERON:0000341;8.39e-34;2!UBERON:0001723;3.89e-23;3!UBERON:0001033;3.89e-23;3!UBERON:0003296;6.79e-18;4!UBERON:0010133;6.79e-18;4!UBERON:0002784;6.79e-18;4!UBERON:0002426;8.02e-18;1!UBERON:0003831;8.02e-18;1!UBERON:0003898;8.02e-18;1!UBERON:0004830;8.02e-18;1!UBERON:0003830;8.02e-18;1!UBERON:0005175;8.02e-18;1!UBERON:0001774;8.02e-18;1!UBERON:0001103;8.02e-18;1!UBERON:0000974;5.68e-12;6!UBERON:0000020;6.29e-12;23!UBERON:0001032;1.92e-11;24!UBERON:0004456;1.92e-11;24!UBERON:0001894;1.21e-10;7!UBERON:0005090;1.38e-09;2!UBERON:0001630;1.38e-09;2!UBERON:0003127;1.64e-09;2!UBERON:0002360;1.94e-09;2!UBERON:0000094;1.94e-09;2!UBERON:0010743;1.94e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.11e-34,2;UBERON:0002757,1.11e-34,2;UBERON:0010134,1.11e-34,2;UBERON:0005408,1.11e-34,2;UBERON:0001899,1.11e-34,2;UBERON:0000341,7.10e-34,2;UBERON:0001723,3.68e-23,3;UBERON:0001033,3.68e-23,3;UBERON:0010056,3.68e-23,3;UBERON:0003296,6.79e-18,4;UBERON:0010133,6.79e-18,4;UBERON:0002784,6.79e-18,4;UBERON:0002426,8.72e-18,1;UBERON:0003831,8.72e-18,1;UBERON:0003898,8.72e-18,1;UBERON:0004830,8.72e-18,1;UBERON:0003830,8.72e-18,1;UBERON:0005175,8.72e-18,1;UBERON:0001774,8.72e-18,1;UBERON:0001103,8.72e-18,1;UBERON:0010084,8.72e-18,1;UBERON:0000020,1.92e-11,24;UBERON:0001032,1.92e-11,24;UBERON:0004456,1.92e-11,24;UBERON:0001894,1.21e-10,7;UBERON:0006222,1.21e-10,7;UBERON:0005090,1.44e-09,2;UBERON:0001630,1.44e-09,2;UBERON:0003127,1.71e-09,2;UBERON:0002360,2.02e-09,2;UBERON:0000094,2.02e-09,2;UBERON:0010743,2.02e-09,2;UBERON:0001042,1.29e-07,10;UBERON:0009145,1.29e-07,10;UBERON:0000974,1.47e-07,10;UBERON:0006562,5.31e-07,11 | |||
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|short_description=p3@LRTM1 | |short_description=p3@LRTM1 | ||
}} | }} |
Latest revision as of 02:27, 19 September 2015
Short description: | p3@LRTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRTM1_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -151bp_to_ENST00000273286_5end |
EntrezGene: | LRTM1 |
HGNC: | 25023 |
UniProt: | Q9HBL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.11e-34 | 2 |
regional part of epithalamus | 1.11e-34 | 2 |
secretory circumventricular organ | 1.11e-34 | 2 |
circumventricular organ | 1.11e-34 | 2 |
epithalamus | 1.11e-34 | 2 |
throat | 7.10e-34 | 2 |
tongue | 3.68e-23 | 3 |
gustatory system | 3.68e-23 | 3 |
future tongue | 3.68e-23 | 3 |
gland of diencephalon | 6.79e-18 | 4 |
neuroendocrine gland | 6.79e-18 | 4 |
regional part of diencephalon | 6.79e-18 | 4 |
chest muscle | 8.72e-18 | 1 |
respiratory system muscle | 8.72e-18 | 1 |
skeletal muscle of trunk | 8.72e-18 | 1 |
respiratory system skeletal muscle | 8.72e-18 | 1 |
thoracic segment muscle | 8.72e-18 | 1 |
chest organ | 8.72e-18 | 1 |
muscle of trunk | 8.72e-18 | 1 |
diaphragm | 8.72e-18 | 1 |
future diaphragm | 8.72e-18 | 1 |
sense organ | 1.92e-11 | 24 |
sensory system | 1.92e-11 | 24 |
entire sense organ system | 1.92e-11 | 24 |
diencephalon | 1.21e-10 | 7 |
future diencephalon | 1.21e-10 | 7 |
muscle structure | 1.44e-09 | 2 |
muscle organ | 1.44e-09 | 2 |
open tracheal system trachea | 1.71e-09 | 2 |
meninx | 2.02e-09 | 2 |
membrane organ | 2.02e-09 | 2 |
meningeal cluster | 2.02e-09 | 2 |
chordate pharynx | 1.29e-07 | 10 |
pharyngeal region of foregut | 1.29e-07 | 10 |
neck | 1.47e-07 | 10 |
pharynx | 5.31e-07 | 11 |