FFCP PHASE1:Hg19::chr2:190446738..190446765,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=30061 | |EntrezGene=30061 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10909 | |HGNC=10909 | ||
|TSSclassifier=strong | |||
|UniProt=Q4PNE6,E7EQF8 | |UniProt=Q4PNE6,E7EQF8 | ||
|association_with_transcript=0bp_to_ENST00000427419,ENST00000455320,uc010zfx.1_5end | |association_with_transcript=0bp_to_ENST00000427419,ENST00000455320,uc010zfx.1_5end | ||
|cluster_id=chr2:190446738..190446765,- | |||
|coexpression_cluster_id=C2355 | |coexpression_cluster_id=C2355 | ||
|description=CAGE_peak_3_at_SLC40A1_5end | |description=CAGE_peak_3_at_SLC40A1_5end | ||
|id=chr2:190446738..190446765,- | |id=chr2:190446738..190446765,- | ||
|ontology_enrichment_celltype=CL:0002274!4.58e-08!5;CL:0000457!4.58e-08!5;CL:0002191!4.58e-08!5;CL:0000097!4.58e-08!5;CL:0000831!4.58e-08!5;CL:0002028!4.58e-08!5;CL:0000763!2.73e-07!112;CL:0000049!2.73e-07!112;CL:0000764!6.60e-07!2;CL:0000765!6.60e-07!2;CL:0000050!6.60e-07!2;CL:0000038!6.60e-07!2;CL:0000558!6.60e-07!2;CL:0000547!6.60e-07!2;CL:0000549!6.60e-07!2;CL:0000550!6.60e-07!2;CL:0000552!6.60e-07!2 | |ontology_enrichment_celltype=CL:0002274!4.58e-08!5;CL:0000457!4.58e-08!5;CL:0002191!4.58e-08!5;CL:0000097!4.58e-08!5;CL:0000831!4.58e-08!5;CL:0002028!4.58e-08!5;CL:0000763!2.73e-07!112;CL:0000049!2.73e-07!112;CL:0000764!6.60e-07!2;CL:0000765!6.60e-07!2;CL:0000050!6.60e-07!2;CL:0000038!6.60e-07!2;CL:0000558!6.60e-07!2;CL:0000547!6.60e-07!2;CL:0000549!6.60e-07!2;CL:0000550!6.60e-07!2;CL:0000552!6.60e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000764;7.88e-15;2!CL:0000558;7.88e-15;2!CL:0000037;1.07e-07;1!CL:0001024;1.07e-07;1!CL:0002563;4.57e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,7.88e-15,2;CL:0000765,7.88e-15,2;CL:0000050,7.88e-15,2;CL:0000038,7.88e-15,2;CL:0000558,7.88e-15,2;CL:0000547,7.88e-15,2;CL:0000549,7.88e-15,2;CL:0000550,7.88e-15,2;CL:0000552,7.88e-15,2;CL:0000763,2.62e-12,108;CL:0000049,2.62e-12,108;CL:0000037,5.74e-09,168;CL:0000988,2.48e-08,177;CL:0002032,2.54e-08,161;CL:0000837,2.54e-08,161;CL:0001024,1.04e-07,1;CL:0002563,4.71e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!1.85e-21!31;DOID:1240!3.42e-18!39;DOID:1036!2.34e-16!8;DOID:2531!9.94e-13!51;DOID:0060083!9.94e-13!51 | |ontology_enrichment_disease=DOID:8692!1.85e-21!31;DOID:1240!3.42e-18!39;DOID:1036!2.34e-16!8;DOID:2531!9.94e-13!51;DOID:0060083!9.94e-13!51 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.15e-32;31!DOID:1036;1.94e-29;8!DOID:1240;2.42e-24;39!DOID:2531;9.67e-17;51!DOID:0060083;9.67e-17;51!DOID:8552;3.55e-08;1!DOID:9119;8.51e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.51e-33,31;DOID:1240,2.57e-30,39;DOID:1036,2.04e-29,8;DOID:2531,1.58e-22,51;DOID:0060083,1.58e-22,51;DOID:8552,3.55e-08,1;DOID:9119,8.51e-08,1;DOID:0050686,1.09e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.62e-15!15;UBERON:0000179!6.62e-15!15;UBERON:0000463!6.62e-15!15 | |ontology_enrichment_uberon=UBERON:0000178!6.62e-15!15;UBERON:0000179!6.62e-15!15;UBERON:0000463!6.62e-15!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0001242;4.57e-07;4!UBERON:0001262;4.57e-07;4!UBERON:0004786;4.57e-07;4!UBERON:0004808;4.57e-07;4!UBERON:0001277;4.57e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,4.71e-07,4;UBERON:0001262,4.71e-07,4;UBERON:0004786,4.71e-07,4;UBERON:0004808,4.71e-07,4;UBERON:0001277,4.71e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,3.81680571135301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8954195721123,5.60508562981536,24.7581039688572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.621984346622316,2.45003920808834,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.0445740956463,41.8296721639841,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.53723804616085,0,0.569647187174163,0.476463550915578,0.411362273086194,1.29694662238543,0.540031437238115,0.79312517629427,0,0,0,0,0,0,2.23196781820351,0.798317485731266,0.766021480529467,0,0,12.6358730151056,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0.835218521685727,6.15436994738562,19.4728088502708,5.32915148796512,12.6888304579065,0.18714054040822,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,1.99613798001194,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,21.9399420108206,6.09108283666388,8.23462644134506,6.20939871810618,8.34916423986414,42.7539397457219,0,0,1.13082457147153,0,0,0,0.611030144933625,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403100834920358,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.472091293214983,0,0,0,0,0,0,0,0,0,0,10.9183052596621,0,0,0,6.62534444561107,0.129282956361551,0,0,0,0.106787412567695,2.51526888159466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,0,0,0,0,0,0,0,0.0771741581079447,0.874238242015829,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,3.28735228665244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0.452122368852043,0.31037357147929,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,3.81680571135301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8954195721123,5.60508562981536,24.7581039688572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.621984346622316,2.45003920808834,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.0445740956463,41.8296721639841,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.53723804616085,0,0.569647187174163,0.476463550915578,0.411362273086194,1.29694662238543,0.540031437238115,0.79312517629427,0,0,0,0,0,0,2.23196781820351,0.798317485731266,0.766021480529467,0,0,12.6358730151056,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0.835218521685727,6.15436994738562,19.4728088502708,5.32915148796512,12.6888304579065,0.18714054040822,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,1.99613798001194,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,21.9399420108206,6.09108283666388,8.23462644134506,6.20939871810618,8.34916423986414,42.7539397457219,0,0,1.13082457147153,0,0,0,0.611030144933625,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403100834920358,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.472091293214983,0,0,0,0,0,0,0,0,0,0,10.9183052596621,0,0,0,6.62534444561107,0.129282956361551,0,0,0,0.106787412567695,2.51526888159466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,0,0,0,0,0,0,0,0.0771741581079447,0.874238242015829,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,3.28735228665244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0.452122368852043,0.31037357147929,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p3@SLC40A1 | |short_description=p3@SLC40A1 | ||
}} | }} |
Latest revision as of 02:16, 19 September 2015
Short description: | p3@SLC40A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC40A1_5end |
Coexpression cluster: | C2355_Reticulocytes_chronic_acute_CD34_skeletal_Skeletal_leukemia |
Association with transcript: | 0bp_to_ENST00000427419, ENST00000455320, uc010zfx.1_5end |
EntrezGene: | SLC40A1 |
HGNC: | 10909 |
UniProt: | Q4PNE6E7EQF8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 7.88e-15 | 2 |
erythroblast | 7.88e-15 | 2 |
megakaryocyte-erythroid progenitor cell | 7.88e-15 | 2 |
erythroid progenitor cell | 7.88e-15 | 2 |
reticulocyte | 7.88e-15 | 2 |
proerythroblast | 7.88e-15 | 2 |
basophilic erythroblast | 7.88e-15 | 2 |
polychromatophilic erythroblast | 7.88e-15 | 2 |
orthochromatic erythroblast | 7.88e-15 | 2 |
myeloid cell | 2.62e-12 | 108 |
common myeloid progenitor | 2.62e-12 | 108 |
hematopoietic stem cell | 5.74e-09 | 168 |
hematopoietic cell | 2.48e-08 | 177 |
hematopoietic oligopotent progenitor cell | 2.54e-08 | 161 |
hematopoietic multipotent progenitor cell | 2.54e-08 | 161 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.04e-07 | 1 |
intestinal epithelial cell | 4.71e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 4.71e-07 | 4 |
wall of intestine | 4.71e-07 | 4 |
gastrointestinal system mucosa | 4.71e-07 | 4 |
gastrointestinal system epithelium | 4.71e-07 | 4 |
intestinal epithelium | 4.71e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.51e-33 | 31 |
leukemia | 2.57e-30 | 39 |
chronic leukemia | 2.04e-29 | 8 |
hematologic cancer | 1.58e-22 | 51 |
immune system cancer | 1.58e-22 | 51 |
chronic myeloid leukemia | 3.55e-08 | 1 |
acute myeloid leukemia | 8.51e-08 | 1 |
organ system cancer | 1.09e-07 | 137 |