FFCP PHASE1:Hg19::chr12:53614115..53614154,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5916 | |EntrezGene=5916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9866 | |HGNC=9866 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001scd.2,uc010sob.1,uc010sod.1_5end | |association_with_transcript=0bp_to_uc001scd.2,uc010sob.1,uc010sod.1_5end | ||
|cluster_id=chr12:53614115..53614154,- | |||
|description=CAGE_peak_1_at_RARG_5end | |description=CAGE_peak_1_at_RARG_5end | ||
|id=chr12:53614115..53614154,- | |id=chr12:53614115..53614154,- | ||
|ontology_enrichment_celltype=CL:0000055!7.92e-30!180;CL:0000057!9.98e-18!75;CL:0002371!2.49e-16!591;CL:0000723!4.49e-14!436;CL:0000048!4.57e-14!430;CL:0000680!6.68e-14!57;CL:0000056!6.68e-14!57;CL:0000355!6.68e-14!57;CL:0000034!3.01e-13!444;CL:0000183!7.57e-13!59;CL:0000187!1.44e-12!54;CL:0000144!2.86e-12!625;CL:0000192!8.96e-11!42;CL:0000514!8.96e-11!42;CL:0002620!3.10e-10!23;CL:0000393!4.18e-10!60;CL:0000211!4.18e-10!60;CL:0000359!5.76e-09!32;CL:0002320!1.34e-07!365;CL:0000548!3.22e-07!679;CL:0000004!3.22e-07!679;CL:0000255!3.22e-07!679 | |ontology_enrichment_celltype=CL:0000055!7.92e-30!180;CL:0000057!9.98e-18!75;CL:0002371!2.49e-16!591;CL:0000723!4.49e-14!436;CL:0000048!4.57e-14!430;CL:0000680!6.68e-14!57;CL:0000056!6.68e-14!57;CL:0000355!6.68e-14!57;CL:0000034!3.01e-13!444;CL:0000183!7.57e-13!59;CL:0000187!1.44e-12!54;CL:0000144!2.86e-12!625;CL:0000192!8.96e-11!42;CL:0000514!8.96e-11!42;CL:0002620!3.10e-10!23;CL:0000393!4.18e-10!60;CL:0000211!4.18e-10!60;CL:0000359!5.76e-09!32;CL:0002320!1.34e-07!365;CL:0000548!3.22e-07!679;CL:0000004!3.22e-07!679;CL:0000255!3.22e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.82e-10;23!CL:0000192;9.65e-09;43!CL:0000359;1.12e-08;32!CL:0000057;1.36e-07;73!CL:0000187;2.44e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.29e-17,76;CL:0000680,1.84e-14,58;CL:0000056,1.84e-14,58;CL:0000355,1.84e-14,58;CL:0000723,7.11e-14,433;CL:0000048,9.37e-14,427;CL:0000187,4.22e-13,55;CL:0000034,4.71e-13,441;CL:0000192,2.78e-11,43;CL:0000514,2.78e-11,43;CL:0000393,1.17e-10,61;CL:0000211,1.17e-10,61;CL:0002620,2.31e-10,23;CL:0000359,4.48e-09,32;CL:0002320,4.47e-07,361;CL:0000222,7.89e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;9.65e-09;43!CL:0000355;2.90e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.39e-18!83;UBERON:0002329!5.39e-18!83;UBERON:0003077!5.39e-18!83;UBERON:0003059!5.39e-18!83;UBERON:0007282!5.39e-18!83;UBERON:0009618!5.39e-18!83;UBERON:0007285!5.39e-18!83;UBERON:0004290!3.10e-16!70;UBERON:0003102!5.35e-16!95;UBERON:0000486!3.27e-14!82;UBERON:0001134!6.69e-13!61;UBERON:0002036!6.69e-13!61;UBERON:0003082!6.69e-13!61;UBERON:0002204!9.07e-13!167;UBERON:0002385!2.37e-12!63;UBERON:0001015!2.37e-12!63;UBERON:0000383!2.37e-12!63;UBERON:0002097!3.74e-11!40;UBERON:0002199!5.73e-11!45;UBERON:0002416!5.73e-11!45;UBERON:0005256!7.32e-10!143;UBERON:0000926!1.88e-08!448;UBERON:0004120!1.88e-08!448;UBERON:0006603!1.88e-08!448;UBERON:0003104!1.27e-07!238;UBERON:0009142!1.27e-07!238;UBERON:0002384!1.49e-07!375 | |ontology_enrichment_uberon=UBERON:0000914!5.39e-18!83;UBERON:0002329!5.39e-18!83;UBERON:0003077!5.39e-18!83;UBERON:0003059!5.39e-18!83;UBERON:0007282!5.39e-18!83;UBERON:0009618!5.39e-18!83;UBERON:0007285!5.39e-18!83;UBERON:0004290!3.10e-16!70;UBERON:0003102!5.35e-16!95;UBERON:0000486!3.27e-14!82;UBERON:0001134!6.69e-13!61;UBERON:0002036!6.69e-13!61;UBERON:0003082!6.69e-13!61;UBERON:0002204!9.07e-13!167;UBERON:0002385!2.37e-12!63;UBERON:0001015!2.37e-12!63;UBERON:0000383!2.37e-12!63;UBERON:0002097!3.74e-11!40;UBERON:0002199!5.73e-11!45;UBERON:0002416!5.73e-11!45;UBERON:0005256!7.32e-10!143;UBERON:0000926!1.88e-08!448;UBERON:0004120!1.88e-08!448;UBERON:0006603!1.88e-08!448;UBERON:0003104!1.27e-07!238;UBERON:0009142!1.27e-07!238;UBERON:0002384!1.49e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.40e-09;41!UBERON:0003102;1.22e-08;50!UBERON:0002199;5.84e-08;46!UBERON:0002416;5.84e-08;46 | |||
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| ||
|short_description=p1@RARG | |short_description=p1@RARG | ||
}} | }} |
Latest revision as of 02:12, 19 September 2015
Short description: | p1@RARG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RARG_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001scd.2, uc010sob.1, uc010sod.1_5end |
EntrezGene: | RARG |
HGNC: | 9866 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.29e-17 | 76 |
muscle precursor cell | 1.84e-14 | 58 |
myoblast | 1.84e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.84e-14 | 58 |
somatic stem cell | 7.11e-14 | 433 |
multi fate stem cell | 9.37e-14 | 427 |
muscle cell | 4.22e-13 | 55 |
stem cell | 4.71e-13 | 441 |
smooth muscle cell | 2.78e-11 | 43 |
smooth muscle myoblast | 2.78e-11 | 43 |
electrically responsive cell | 1.17e-10 | 61 |
electrically active cell | 1.17e-10 | 61 |
skin fibroblast | 2.31e-10 | 23 |
vascular associated smooth muscle cell | 4.48e-09 | 32 |
connective tissue cell | 4.47e-07 | 361 |
mesodermal cell | 7.89e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
somite | 5.96e-17 | 71 |
presomitic mesoderm | 5.96e-17 | 71 |
presumptive segmental plate | 5.96e-17 | 71 |
dermomyotome | 5.96e-17 | 71 |
trunk paraxial mesoderm | 5.96e-17 | 71 |
epithelial vesicle | 7.03e-17 | 78 |
dense mesenchyme tissue | 1.08e-16 | 73 |
surface structure | 3.06e-16 | 99 |
paraxial mesoderm | 3.50e-16 | 72 |
presumptive paraxial mesoderm | 3.50e-16 | 72 |
multilaminar epithelium | 1.20e-14 | 83 |
skeletal muscle tissue | 1.52e-13 | 62 |
striated muscle tissue | 1.52e-13 | 62 |
myotome | 1.52e-13 | 62 |
musculoskeletal system | 3.34e-13 | 167 |
muscle tissue | 5.61e-13 | 64 |
musculature | 5.61e-13 | 64 |
musculature of body | 5.61e-13 | 64 |
skin of body | 4.12e-12 | 41 |
integument | 5.26e-12 | 46 |
integumental system | 5.26e-12 | 46 |
trunk mesenchyme | 1.43e-09 | 122 |
mesoderm | 2.53e-09 | 315 |
mesoderm-derived structure | 2.53e-09 | 315 |
presumptive mesoderm | 2.53e-09 | 315 |
unilaminar epithelium | 3.93e-08 | 148 |
mesenchyme | 7.15e-08 | 160 |
entire embryonic mesenchyme | 7.15e-08 | 160 |
connective tissue | 4.86e-07 | 371 |