FFCP PHASE1:Hg19::chr2:189872602..189872638,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1281 | |EntrezGene=1281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2201 | |HGNC=2201 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-389bp_to_ENST00000487010_5end | |association_with_transcript=-389bp_to_ENST00000487010_5end | ||
|cluster_id=chr2:189872602..189872638,+ | |||
|coexpression_cluster_id=C401 | |||
|description=CAGE_peak_14_at_COL3A1_5end | |description=CAGE_peak_14_at_COL3A1_5end | ||
|id=chr2:189872602..189872638,+ | |id=chr2:189872602..189872638,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.17e-19!180;CL:0000057!1.75e-13!75;CL:0000187!3.86e-11!54;CL:0000183!6.86e-11!59;CL:0000680!1.13e-10!57;CL:0000056!1.13e-10!57;CL:0000355!1.13e-10!57;CL:0000393!5.58e-09!60;CL:0000211!5.58e-09!60;CL:0000048!3.90e-08!430;CL:0000136!6.88e-08!15;CL:0000723!1.47e-07!436;CL:0000034!3.99e-07!444;CL:0002494!5.45e-07!16;CL:0000192!6.66e-07!42;CL:0000514!6.66e-07!42 | |ontology_enrichment_celltype=CL:0000055!2.17e-19!180;CL:0000057!1.75e-13!75;CL:0000187!3.86e-11!54;CL:0000183!6.86e-11!59;CL:0000680!1.13e-10!57;CL:0000056!1.13e-10!57;CL:0000355!1.13e-10!57;CL:0000393!5.58e-09!60;CL:0000211!5.58e-09!60;CL:0000048!3.90e-08!430;CL:0000136!6.88e-08!15;CL:0000723!1.47e-07!436;CL:0000034!3.99e-07!444;CL:0002494!5.45e-07!16;CL:0000192!6.66e-07!42;CL:0000514!6.66e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002615;6.60e-09;3!CL:0000136;8.28e-09;13!CL:0000632;8.46e-09;3!CL:0000135;1.61e-08;3!CL:0000388;1.61e-08;3!CL:0002580;1.42e-07;3!CL:0000197;7.58e-07;6!CL:0000098;7.58e-07;6!CL:0002167;7.58e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.12e-09,15;CL:0000632,6.81e-09,3;CL:0002615,8.62e-09,3;CL:0000135,1.48e-08,3;CL:0000388,1.48e-08,3;CL:0002580,2.16e-07,3;CL:0000197,5.94e-07,6;CL:0000098,5.94e-07,6;CL:0002167,5.94e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.96e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!6.57e-12!63;UBERON:0001015!6.57e-12!63;UBERON:0000383!6.57e-12!63;UBERON:0001134!2.67e-11!61;UBERON:0002036!2.67e-11!61;UBERON:0003082!2.67e-11!61;UBERON:0000914!2.46e-09!83;UBERON:0002329!2.46e-09!83;UBERON:0003077!2.46e-09!83;UBERON:0003059!2.46e-09!83;UBERON:0007282!2.46e-09!83;UBERON:0009618!2.46e-09!83;UBERON:0007285!2.46e-09!83;UBERON:0004290!6.06e-09!70;UBERON:0000948!9.33e-09!24;UBERON:0005498!9.33e-09!24;UBERON:0004140!9.33e-09!24;UBERON:0009881!9.33e-09!24;UBERON:0004141!9.33e-09!24;UBERON:0003084!9.33e-09!24;UBERON:0007005!9.33e-09!24;UBERON:0004139!9.33e-09!24;UBERON:0004291!9.33e-09!24;UBERON:0005256!2.30e-07!143;UBERON:0007100!3.54e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.61e-08;3!UBERON:0000043;1.61e-08;3!UBERON:0007845;1.61e-08;3!UBERON:0001443;1.56e-07;11!UBERON:0003688;3.22e-07;6!UBERON:0002358;3.22e-07;6!UBERON:0003684;3.22e-07;6!UBERON:0001178;3.22e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.48e-08,3;UBERON:0000043,1.48e-08,3;UBERON:0007845,1.48e-08,3;UBERON:0001443,1.66e-07,11;UBERON:0003688,3.54e-07,6;UBERON:0002358,3.54e-07,6;UBERON:0003684,3.54e-07,6;UBERON:0001178,3.54e-07,6 | |||
|phase1_expression=1.63510541343501,2.5692062866918,2.11431606143957,4.00293193412522,4.46961094427288,2.61701557230111,0,1.26343974685366,0.261185628199839,0,0,0.655324116390517,0.791300934685361,0.247532705920093,2.65117900582333,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.199441925932,0.670700859703636,0.511450247374121,0.361439152384566,1.50401373190767,0.434539556882471,14.3151470469198,6.8128881842369,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.379891534993739,0.529636723252875,1.43418310374407,0.354668382198357,2.80338800071154,0,0.49333509683432,0.933633106199299,0.269421344139376,0.817309515567294,1.36221684880438,6.91411109375999,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,1.82032272387605,0,0.168336113954066,0,0,0,0.612975591598039,0.150238058906597,0.226864366320042,0.179389635688862,0.213557388818567,1.27159140695737,0.600182192168805,0.206105058476878,0.515281080091258,1.30281799432113,0.843881661206331,0.0974370051611986,0.757301322732344,0.460249493211497,0.484938170456436,0.710019185033229,0.10075209822764,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0.464367928031979,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0,0,2.4694440679884,2.94017422771084,0,0,0.590789906681404,0,0,0,0,0,0,0,0,1.03993478527958,0,0,1.17408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0.07333828582095,1.03417372606222,0,0,1.32969058292435,0,0,0,0,2.28764789853036,5.96883765930587,0,0.325736184293735,3.19852753868291,0,0,0,0.299918973546171,0,0,0,0.239624855491583,2.29723871668228,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.981531933753119,1.00034104211935,0.542530047399471,3.95144636908534,2.3195768543631,1.41932173530541,1.63997980989798,0.300946099727719,2.27407504055985,0,0.664225598535437,0.184369168541703,0,0.391602314925481,0.686286847621712,0,0,0,0,0,0.604780586659361,1.24053903909388,1.2276957863045,1.40330047216537,0.640695746278505,0,1.44768529029247,0,0.154209693802656,0.177561725313127,0.164254312027618,0.519254429183621,0.116210378459959,0,0,0,0.918515585316854,0.364182336013434,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.193341436584244,0.308097234229289,0.15350367472613,0.137836572484531,0.429680979473094,0.580066775656914,0.0852266274161009,1.69160867728801,0,0,0,0,0,1.5740617341532,0,0.616067160352178,0,0,0,0.286249773483982,0.372158369359667,0.316379424718726,0.953150969619124,0,4.70732886837312,0.318203247925937,0.78494864019923,0.899362287916574,1.64722217841633,1.64937363283961,0.202182481573316,0,0.421258456238981,0.975267478179181,0.487426979262569,0,0.818999468447914,1.27264888758341,1.13008116620243,1.10273068709225,0,0,0,2.62357900818653,0.202910376962704,0,0.281695602532241,0.286822704408103,0.88424136911809,0,0,0.422215270595328,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,2.07875276582847,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0.769502585037971,0.113942055847001,0,0,0,0.638002319463839,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,14.4463976513782,0,0,0,0,0,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,2.03382666702479,0,0,0,0,0,0.426905989478705,0,0,0.114536596165916,0,0,0,0,0.543616824294456,0.209205692624666,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0.717873024576814,0,0,0,0.739018197353989,6.48539790376326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,3.40776043570843,0,0,0,0,0,0,0,0.427149650270779,0.471612915298998,0,0,0,0,0,0.544017803369474,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74627401443437,0.934853239388898,0,0,0.754703705257725,1.77962244319307,0,1.05861646634267,0.621748802331122,0.147855149989634,0.63718706865481,0.449803112163605,0.155262956876259,0,1.32920857278997,1.5652351854352,2.10360652596106,1.14241563650639,0.813741466409323,0.909243296012797,0.322231671127465,0.928067519756987,0.398095888698616,0.400027764663154,1.71697852591396,0.673498977531838,0,0.192619830407303,0,0,0,0,0,0,0,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0.425149840203366,0,0,0,0,0,1.41070377476274,2.1437183414724,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0.762764190934334,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0.280272163313789,4.56579360254748,0,0,0.0714765441766563,0,0.348724276104376,0.347716544605159,3.2068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| ||
|short_description=p14@COL3A1 | |short_description=p14@COL3A1 | ||
}} | }} |
Latest revision as of 01:29, 19 September 2015
Short description: | p14@COL3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_COL3A1_5end |
Coexpression cluster: | C401_Cardiac_pineal_occipital_globus_Hepatocyte_Osteoblast_hippocampus |
Association with transcript: | -389bp_to_ENST00000487010_5end |
EntrezGene: | COL3A1 |
HGNC: | 2201 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.12e-09 | 15 |
hepatic stellate cell | 6.81e-09 | 3 |
adipocyte of omentum tissue | 8.62e-09 | 3 |
fibrocyte | 1.48e-08 | 3 |
tendon cell | 1.48e-08 | 3 |
preadipocyte of the breast | 2.16e-07 | 3 |
receptor cell | 5.94e-07 | 6 |
sensory epithelial cell | 5.94e-07 | 6 |
olfactory epithelial cell | 5.94e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.48e-08 | 3 |
tendon | 1.48e-08 | 3 |
regular connective tissue | 1.48e-08 | 3 |
chest | 1.66e-07 | 11 |
omentum | 3.54e-07 | 6 |
peritoneum | 3.54e-07 | 6 |
abdominal cavity | 3.54e-07 | 6 |
visceral peritoneum | 3.54e-07 | 6 |