FFCP PHASE1:Hg19::chr19:48547294..48547342,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56344 | |EntrezGene=56344 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13714 | |HGNC=13714 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP86 | |UniProt=Q9NP86 | ||
|association_with_transcript=0bp_to_ENST00000293255,NM_019855,uc002phu.1_5end | |association_with_transcript=0bp_to_ENST00000293255,NM_019855,uc002phu.1_5end | ||
|cluster_id=chr19:48547294..48547342,- | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_CABP5_5end | |description=CAGE_peak_1_at_CABP5_5end | ||
|id=chr19:48547294..48547342,- | |id=chr19:48547294..48547342,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000306;3.79e-11;4!CL:0002222;3.79e-11;4!CL:0002224;3.79e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,3.79e-11,4;CL:0002222,3.79e-11,4;CL:0002224,3.79e-11,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.87e-53;3 | |||
|ontology_enrichment_disease=DOID:8552!3.25e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;3.10e-11;4!DOID:1325;5.70e-07;7!DOID:3904;5.70e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.10e-11,4;DOID:1325,5.70e-07,7;DOID:3904,5.70e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0001905!3.67e-17!2;UBERON:0002757!3.67e-17!2;UBERON:0010134!3.67e-17!2;UBERON:0002784!3.67e-17!2;UBERON:0005408!3.67e-17!2;UBERON:0001899!3.67e-17!2;UBERON:0000178!2.62e-13!15;UBERON:0000179!2.62e-13!15;UBERON:0000463!2.62e-13!15;UBERON:0000200!3.65e-12!6;UBERON:0007023!2.07e-09!115;UBERON:0003056!3.89e-09!61;UBERON:0007190!4.87e-09!1;UBERON:0003296!4.89e-09!4;UBERON:0010133!4.89e-09!4;UBERON:0002581!5.28e-09!1;UBERON:0002346!7.99e-09!90;UBERON:0000955!9.98e-08!69;UBERON:0006238!9.98e-08!69;UBERON:0000966!1.24e-07!5;UBERON:0005388!1.24e-07!5;UBERON:0001802!1.24e-07!5;UBERON:0005743!1.78e-07!86;UBERON:0000970!7.14e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.70e-32;5!UBERON:0005388;1.70e-32;5!UBERON:0001802;1.70e-32;5!UBERON:0000970;3.67e-32;20!UBERON:0002104;1.13e-30;21!UBERON:0000020;4.37e-28;23!UBERON:0001032;5.93e-27;24!UBERON:0004456;5.93e-27;24!UBERON:0000019;1.79e-19;19!UBERON:0000047;1.79e-19;19!UBERON:0004088;1.79e-19;19!UBERON:0010230;1.79e-19;19!UBERON:0001456;1.04e-17;21!UBERON:0010077;3.79e-11;4!UBERON:0005389;3.79e-11;4!UBERON:0000484;3.79e-11;4!UBERON:0000965;3.79e-11;4!UBERON:0001803;3.79e-11;4!UBERON:0001444;4.90e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.13e-30,21;UBERON:0002104,1.13e-30,21;UBERON:0000966,2.72e-27,6;UBERON:0005388,2.72e-27,6;UBERON:0001802,2.72e-27,6;UBERON:0000020,5.93e-27,24;UBERON:0001032,5.93e-27,24;UBERON:0004456,5.93e-27,24;UBERON:0000019,1.51e-18,20;UBERON:0000047,1.51e-18,20;UBERON:0010312,1.51e-18,20;UBERON:0004088,1.51e-18,20;UBERON:0010230,1.51e-18,20;UBERON:0003072,1.51e-18,20;UBERON:0004128,1.51e-18,20;UBERON:0003071,1.51e-18,20;UBERON:0001456,6.04e-17,22;UBERON:0005085,2.79e-12,31;UBERON:0010077,3.79e-11,4;UBERON:0005389,3.79e-11,4;UBERON:0000484,3.79e-11,4;UBERON:0002546,3.79e-11,4;UBERON:0000965,3.79e-11,4;UBERON:0001803,3.79e-11,4;UBERON:0003073,3.79e-11,4;UBERON:0005426,3.79e-11,4;UBERON:0001444,4.65e-08,49;UBERON:0000033,3.84e-07,56 | |||
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|short_description=p1@CABP5 | |short_description=p1@CABP5 | ||
}} | }} |
Latest revision as of 01:16, 19 September 2015
Short description: | p1@CABP5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CABP5_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000293255, NM_019855, uc002phu.1_5end |
EntrezGene: | CABP5 |
HGNC: | 13714 |
UniProt: | Q9NP86 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 3.79e-11 | 4 |
vertebrate lens cell | 3.79e-11 | 4 |
lens epithelial cell | 3.79e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
eye | 1.13e-30 | 21 |
visual system | 1.13e-30 | 21 |
retina | 2.72e-27 | 6 |
photoreceptor array | 2.72e-27 | 6 |
posterior segment of eyeball | 2.72e-27 | 6 |
sense organ | 5.93e-27 | 24 |
sensory system | 5.93e-27 | 24 |
entire sense organ system | 5.93e-27 | 24 |
camera-type eye | 1.51e-18 | 20 |
simple eye | 1.51e-18 | 20 |
immature eye | 1.51e-18 | 20 |
ocular region | 1.51e-18 | 20 |
eyeball of camera-type eye | 1.51e-18 | 20 |
optic cup | 1.51e-18 | 20 |
optic vesicle | 1.51e-18 | 20 |
eye primordium | 1.51e-18 | 20 |
face | 6.04e-17 | 22 |
ectodermal placode | 2.79e-12 | 31 |
cuboidal epithelium | 3.79e-11 | 4 |
transparent eye structure | 3.79e-11 | 4 |
simple cuboidal epithelium | 3.79e-11 | 4 |
cranial placode | 3.79e-11 | 4 |
lens of camera-type eye | 3.79e-11 | 4 |
epithelium of lens | 3.79e-11 | 4 |
lens placode | 3.79e-11 | 4 |
lens vesicle | 3.79e-11 | 4 |
subdivision of head | 4.65e-08 | 49 |
head | 3.84e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.10e-11 | 4 |
bronchus cancer | 5.70e-07 | 7 |
bronchogenic carcinoma | 5.70e-07 | 7 |