FFCP PHASE1:Hg19::chr12:53343121..53343150,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:53343121..53343150,+ to FFCP PHASE1:Hg19::chr12:53343121..53343150,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3875 | |EntrezGene=3875 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6430 | |HGNC=6430 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=210bp_to_ENST00000549078_5end | |||
|cluster_id=chr12:53343121..53343150,+ | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_6_at_KRT18_5end | |||
|id=chr12:53343121..53343150,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.59e-41!254;CL:0000223!2.50e-14!59;CL:0002076!1.57e-12!43;CL:0000077!1.89e-11!19;CL:0002321!2.19e-10!248;CL:0000220!4.83e-10!246;CL:0002202!5.19e-08!9;CL:0002632!5.19e-08!9;CL:0002368!9.04e-08!13;CL:0000082!1.31e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.83e-13;19!CL:0002202;1.02e-12;9!CL:0002632;1.02e-12;9!CL:0000349;9.12e-09;19!CL:0002541;1.28e-08;3!CL:0002368;1.88e-08;13!CL:0000322;1.71e-07;3!CL:0000082;5.76e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.31e-18,253;CL:0000077,1.88e-13,19;CL:0002202,8.18e-13,9;CL:0002632,8.18e-13,9;CL:0000349,5.83e-09,19;CL:0002368,1.63e-08,13;CL:0002541,2.07e-08,3;CL:0000223,6.50e-08,58;CL:0000322,1.40e-07,3;CL:0002076,4.93e-07,42;CL:0000082,5.15e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.98e-28!106;DOID:0050687!9.78e-22!143;DOID:162!9.79e-17!235;DOID:14566!2.55e-16!239;DOID:299!1.87e-10!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.25e-08;25!DOID:5093;6.28e-07;4!DOID:1612;6.28e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.47e-09,106;DOID:299,1.43e-08,25;DOID:14566,6.19e-07,239;DOID:5093,6.65e-07,4;DOID:1612,6.65e-07,4;DOID:0050687,8.83e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.09e-18!169;UBERON:0000925!8.09e-18!169;UBERON:0006595!8.09e-18!169;UBERON:0000077!1.77e-16!130;UBERON:0001007!3.26e-16!155;UBERON:0001555!3.26e-16!155;UBERON:0007026!3.26e-16!155;UBERON:0004921!9.99e-16!129;UBERON:0004185!9.99e-16!129;UBERON:0005911!2.87e-13!82;UBERON:0001048!5.47e-13!168;UBERON:0000466!3.59e-12!126;UBERON:0001041!7.64e-12!98;UBERON:0003104!1.27e-10!238;UBERON:0009142!1.27e-10!238;UBERON:0005177!1.80e-10!107;UBERON:0008947!3.31e-10!38;UBERON:0003258!3.31e-10!38;UBERON:0000464!1.16e-09!104;UBERON:0003929!3.40e-09!54;UBERON:0000072!3.98e-09!46;UBERON:0005631!4.94e-09!14;UBERON:0000158!4.94e-09!14;UBERON:0009569!1.16e-08!113;UBERON:0000065!1.83e-08!53;UBERON:0005153!1.89e-08!37;UBERON:0001004!4.30e-08!72;UBERON:0004802!1.31e-07!19;UBERON:0000115!1.31e-07!19;UBERON:0005156!4.28e-07!59;UBERON:0000990!4.28e-07!59;UBERON:0002100!6.37e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.22e-11;10!UBERON:0000158;4.22e-11;10!UBERON:0003124;1.28e-08;3!UBERON:0000920;1.28e-08;3!UBERON:0004821;1.71e-07;3!UBERON:0007499;1.71e-07;3!UBERON:0003215;1.71e-07;3!UBERON:0010368;1.71e-07;3!UBERON:0009911;1.71e-07;3!UBERON:0002299;1.71e-07;3!UBERON:0006524;1.71e-07;3!UBERON:0008874;1.71e-07;3!UBERON:0002169;1.71e-07;3!UBERON:0004894;1.71e-07;3!UBERON:0007196;3.55e-07;15!UBERON:0001558;3.55e-07;15!UBERON:0004802;5.76e-07;19!UBERON:0000115;5.76e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.11e-13,14;UBERON:0000158,8.11e-13,14;UBERON:0003124,5.63e-09,7;UBERON:0000920,2.07e-08,3;UBERON:0000072,8.84e-08,47;UBERON:0008947,9.54e-08,38;UBERON:0003258,9.54e-08,38;UBERON:0004821,1.40e-07,3;UBERON:0003215,1.40e-07,3;UBERON:0010368,1.40e-07,3;UBERON:0009911,1.40e-07,3;UBERON:0002299,1.40e-07,3;UBERON:0006524,1.40e-07,3;UBERON:0008874,1.40e-07,3;UBERON:0002169,1.40e-07,3;UBERON:0004894,1.40e-07,3;UBERON:0005177,1.67e-07,101;UBERON:0007196,3.14e-07,15;UBERON:0001558,3.14e-07,15;UBERON:0004802,5.15e-07,19;UBERON:0000115,5.15e-07,19;UBERON:0000478,9.94e-07,24 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,1.47440361900905,15.3516256953934,1.96597234917155,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,0.90361775633475,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0,0,0,0,0,0.0945348171640679,1.77383517970051,0.87834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.417989933073621,0,0,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0,0.44905874525234,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0,0,0,0.354668382198357,5.60677600142307,0,0.24666754841716,0,1.34710672069688,0.817309515567294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,1.13432183160021,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0.193260853163297,0.272746120590835,0.286804595389004,0.243947412259191,0.132529768321485,0.69716365721711,0.932949495138334,2.52320850875628,0.36497735907583,0,0,0,0,0,1.77460200059766,1.01150814046861,0.241011029883482,0.882351781859152,0.871517776369625,0.474541238222193,1.07865046528132,0.196221465125346,0.38474715694639,0,0,2.057870056657,1.47008711385542,0,0.982827216677626,0,0,1.10689594688802,0.343135620597051,0,1.1240175325762,0,0,0,0,1.44331342025273,0,0.352226082707465,0,0,0.380508304469197,11.8530659693891,8.58486162094873,0,0,0,0,0,0.425325291727159,0,0,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0,0.791951872933429,0.904318131178758,2.61460037580088,3.19913571782583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.831883446123229,0,0.157702415033935,0.117141414992713,0,0,0,0,0.368738337083406,0,0.195801157462741,0,0,0,0,0.303127571446259,1.66435439510497,2.11673205330776,0,0.306923946576125,0,0,0,0.160853921143607,2.96836132889982,0,0,0,0,0,0.966875596732978,1.40354529212299,0.0920809889358963,0.34444334449382,0.182091168006717,0.262248829918848,0.451199612907412,0.770153371044148,0,1.46139224653261,0,0,0,0.647747748306418,0,0.270946437543853,0.501689773854853,0.764628819135115,6.64860807142979,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0.206082023295445,0.183138929636687,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0.384380134730212,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.316379424718726,0.953150969619124,0,0,0,0,0,0.823611089208164,0.706874414074119,0.202182481573316,0,0.421258456238981,0,0,2.11300293513511,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0,0.92947049429925,1.69017361519345,0,0.491245205065606,0,0.354761064070598,0,0,0,0,0.192444225451024,1.34060455107157,7.62236894029258,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,1.38871292465715,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0.33307196799782,0,0.748562161632879,0,0,0,1.13654458722565,1.90995587790152,1.48482340416319,0.614321404198464,0,0,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0.251932747854276,0.20453736500431,0,0,0.718946809178615,0.716084698702437,0,0,0,1.11136990144637,0,0,0,3.1251331330228,0.0874599999961957,0,0.227586896570999,1.5255219017566,1.89110145414349,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0.538545866458633,2.06430006651815,6.06102203490647,1.09917112082235,9.06159119231679,0,0.156980256395025,0,0.225595660617181,0,0.335643173951685,0,0,3.16497096792041,1.30586246527318,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,1.45668227720456,0,0,0,0,0,0,0.664653872707185,1.323967823502,0.627865836814451,0,0.853828638089378,0,11.2813829917835,0.293977192243133,0.522355239482415,0.52418000472609,0,0.774050650312681,0.365446585430928,0.574808199372465,0,0.176512253383001,0.451961481561065,0,0.19871461170299,0,1.36885967914362,0.240476460754601,1.28071796843612,10.1902900886886,0.864542502924636,0,0,0,0,0.707082103850386,0,0.523014231561666,0,0,0,0,0,1.28929632425987,0,0.279282401272254,0,0,2.59582700648688,0,0,0,0.360299883542404,2.32991899054908,0.393915911536118,1.2362378757175,0.808842526250219,0.590564889088493,0,0,0,0.643012593860077,0.412618309791701,2.49264202817511,0,0,0,0,0.157611414598396,0.104909176269996,0.105600336519406,0.537862017998534,0.383830394638891,0,0,0.5085370753095,0,1.72844298240254,0,0,0,0,0.113312091520126,0,0,0,0,1.02652102730598,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0.124980407962107,0,0,1.6468607378872,0,0,0,0,0,0,0,0,0,0.302461847526478,0.15543720058278,0,0.318593534327405,0,0,0.414706207840855,0,0,0.751288044986092,3.04644169735036,0,0,0.322231671127465,0.464033759878494,0,0,0,0,0,0.963099152036517,0.643324774124777,1.04397716786085,1.13352962756136,3.24131464053368,1.71315693154527,0.537266523244462,3.39681591877069,1.97355644620836,0.530067437837643,4.43702288023104,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| ||
|short_description=p6@KRT18 | |||
}} | }} |
Latest revision as of 01:11, 19 September 2015
Short description: | p6@KRT18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KRT18_5end |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | 210bp_to_ENST00000549078_5end |
EntrezGene: | KRT18 |
HGNC: | 6430 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.31e-18 | 253 |
mesothelial cell | 1.88e-13 | 19 |
epithelial cell of tracheobronchial tree | 8.18e-13 | 9 |
epithelial cell of lower respiratory tract | 8.18e-13 | 9 |
extraembryonic cell | 5.83e-09 | 19 |
respiratory epithelial cell | 1.63e-08 | 13 |
chorionic membrane mesenchymal stem cell | 2.07e-08 | 3 |
endodermal cell | 6.50e-08 | 58 |
pneumocyte | 1.40e-07 | 3 |
endo-epithelial cell | 4.93e-07 | 42 |
epithelial cell of lung | 5.15e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.11e-13 | 14 |
membranous layer | 8.11e-13 | 14 |
chorion | 5.63e-09 | 7 |
egg chorion | 2.07e-08 | 3 |
segment of respiratory tract | 8.84e-08 | 47 |
respiratory primordium | 9.54e-08 | 38 |
endoderm of foregut | 9.54e-08 | 38 |
pulmonary alveolus epithelium | 1.40e-07 | 3 |
alveolus | 1.40e-07 | 3 |
pulmonary lobule | 1.40e-07 | 3 |
lobule | 1.40e-07 | 3 |
alveolus of lung | 1.40e-07 | 3 |
alveolar system | 1.40e-07 | 3 |
pulmonary acinus | 1.40e-07 | 3 |
alveolar sac | 1.40e-07 | 3 |
alveolar wall | 1.40e-07 | 3 |
trunk region element | 1.67e-07 | 101 |
tracheobronchial tree | 3.14e-07 | 15 |
lower respiratory tract | 3.14e-07 | 15 |
respiratory tract epithelium | 5.15e-07 | 19 |
lung epithelium | 5.15e-07 | 19 |
extraembryonic structure | 9.94e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.47e-09 | 106 |
adenocarcinoma | 1.43e-08 | 25 |
disease of cellular proliferation | 6.19e-07 | 239 |
thoracic cancer | 6.65e-07 | 4 |
breast cancer | 6.65e-07 | 4 |
cell type cancer | 8.83e-07 | 143 |