FFCP PHASE1:Hg19::chr6:45296028..45296034,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=860 | |EntrezGene=860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10472 | |HGNC=10472 | ||
|TSSclassifier=strong | |||
|UniProt=Q13950 | |UniProt=Q13950 | ||
|association_with_transcript=-19bp_to_NM_001015051,NM_001024630,uc011dvx.1,uc011dvy.1_5end | |association_with_transcript=-19bp_to_NM_001015051,NM_001024630,uc011dvx.1,uc011dvy.1_5end | ||
|cluster_id=chr6:45296028..45296034,+ | |||
|description=CAGE_peak_24_at_RUNX2_5end | |description=CAGE_peak_24_at_RUNX2_5end | ||
|id=chr6:45296028..45296034,+ | |id=chr6:45296028..45296034,+ | ||
|ontology_enrichment_celltype=CL:0000128!3.12e-12!7;CL:0000126!3.12e-12!7;CL:0000127!3.12e-12!7;CL:0002453!3.12e-12!7;CL:0000243!2.83e-09!15;CL:0000125!2.83e-09!15;CL:0000030!2.83e-09!15;CL:0000339!2.83e-09!15;CL:0002319!2.98e-08!25;CL:0000055!4.85e-08!180;CL:0000095!5.16e-08!17;CL:0000123!5.16e-08!17;CL:0002556!4.31e-07!6 | |ontology_enrichment_celltype=CL:0000128!3.12e-12!7;CL:0000126!3.12e-12!7;CL:0000127!3.12e-12!7;CL:0002453!3.12e-12!7;CL:0000243!2.83e-09!15;CL:0000125!2.83e-09!15;CL:0000030!2.83e-09!15;CL:0000339!2.83e-09!15;CL:0002319!2.98e-08!25;CL:0000055!4.85e-08!180;CL:0000095!5.16e-08!17;CL:0000123!5.16e-08!17;CL:0002556!4.31e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.99e-35;3!CL:0000128;5.69e-27;7!CL:0000126;5.69e-27;7!CL:0000127;5.69e-27;7!CL:0000064;1.08e-16;3!CL:0000067;1.08e-16;3!CL:0005012;1.08e-16;3!CL:0002304;1.08e-16;3!CL:0000062;1.19e-12;9!CL:0000243;2.75e-11;15!CL:0000125;2.75e-11;15!CL:0000095;4.01e-10;17!CL:0002556;9.26e-09;6!CL:0002319;3.52e-07;25!CL:0002561;4.42e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.85e-35,3;CL:0000128,6.09e-27,7;CL:0000126,6.09e-27,7;CL:0000127,6.09e-27,7;CL:0002453,6.09e-27,7;CL:0000064,1.00e-16,3;CL:0000067,1.00e-16,3;CL:0005012,1.00e-16,3;CL:0002304,1.00e-16,3;CL:0000243,2.82e-11,15;CL:0000125,2.82e-11,15;CL:0000030,2.82e-11,15;CL:0000339,2.82e-11,15;CL:0000062,1.83e-10,11;CL:0000375,1.83e-10,11;CL:0000335,1.83e-10,11;CL:0000095,4.11e-10,17;CL:0000123,4.11e-10,17;CL:0002556,8.57e-09,6;CL:0002319,3.58e-07,25;CL:0002561,3.70e-07,2;CL:0000221,3.81e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000339;2.75e-11;15!CL:0000335;1.89e-10;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!2.44e-07!4;UBERON:0001758!4.31e-07!6;UBERON:0003672!4.31e-07!6 | |ontology_enrichment_uberon=UBERON:0000488!2.44e-07!4;UBERON:0001758!4.31e-07!6;UBERON:0003672!4.31e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.08e-16;3!UBERON:0001775;1.08e-16;3!UBERON:0000488;9.19e-13;4!UBERON:0002203;8.24e-09;6!UBERON:0001768;8.24e-09;6!UBERON:0002200;8.24e-09;6!UBERON:0001758;9.26e-09;6!UBERON:0003672;9.26e-09;6!UBERON:0001434;6.88e-08;36!UBERON:0003129;1.25e-07;7!UBERON:0001875;4.42e-07;2!UBERON:0005933;4.42e-07;2!UBERON:0005942;4.42e-07;2!UBERON:0006514;4.42e-07;2!UBERON:0005932;4.42e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.00e-16,3;UBERON:0001775,1.00e-16,3;UBERON:0000488,8.67e-13,4;UBERON:0002203,7.93e-09,6;UBERON:0001768,7.93e-09,6;UBERON:0002200,7.93e-09,6;UBERON:0001758,8.57e-09,6;UBERON:0003672,8.57e-09,6;UBERON:0003129,1.17e-07,7;UBERON:0005933,3.70e-07,2;UBERON:0005942,3.70e-07,2;UBERON:0005932,3.70e-07,2;UBERON:0001875,4.42e-07,2;UBERON:0006514,4.42e-07,2 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,0,0,0,0,0,0.261185628199839,0,0.697801167972428,0,0,0.123766352960047,0,1.34465029290355,0,0.730310090387373,0.975865597581014,0.61560529038394,0.204000691244253,2.82109249330279,1.14494394852423,2.73748850145768,1.12988375635323,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.444859689486181,0.535081656179426,0,0,0,0,0,0,0.651083453856419,0.950452044448374,0,0.511946444617674,0,0,0,0.201606743224732,0,1.01377082717959,0,0,0,0,0,0,0,0,3.30871860074237,1.33037638477538,0.527008714158756,0.458426764241994,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,2.37600571456411,0.989067717114227,0,0,0.168336113954066,0.500474079487857,0,1.75591048352335,2.14541457059314,0.45071417671979,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,0.36807447515742,0,0.271265023699736,0,0,0,0,0.601892199455438,0,0,0,0,0,0,0.343143423810856,0.413536052245775,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,6.40986253728404,5.77566499444116,0,0,0,0.386682873168488,0.308097234229289,0.307007349452259,0,0.322260734604821,0.435050081742686,0,0.356128142586949,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.953150969619124,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.818149460017238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0.101998217636322,0,1.20084057741958,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,0,0.568209015825267,0,0,0,0,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0.450772826991655,0.380805212168795,0,0.727394636810238,0,0,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0.381382095467167,0,2.78482710962785,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0.743990036333503,0.462175628631418,0,0,0.218531143927391,0.126698501011437,0,0,0,0,0.606229585745915,0.535928260312357,0.829169439458779,0,0.213233981900981,0,0.0645889098360061,0.124149428591716,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,0,0,0,0,0,0.261185628199839,0,0.697801167972428,0,0,0.123766352960047,0,1.34465029290355,0,0.730310090387373,0.975865597581014,0.61560529038394,0.204000691244253,2.82109249330279,1.14494394852423,2.73748850145768,1.12988375635323,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.444859689486181,0.535081656179426,0,0,0,0,0,0,0.651083453856419,0.950452044448374,0,0.511946444617674,0,0,0,0.201606743224732,0,1.01377082717959,0,0,0,0,0,0,0,0,3.30871860074237,1.33037638477538,0.527008714158756,0.458426764241994,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,2.37600571456411,0.989067717114227,0,0,0.168336113954066,0.500474079487857,0,1.75591048352335,2.14541457059314,0.45071417671979,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39310378409594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,0.36807447515742,0,0.271265023699736,0,0,0,0,0.601892199455438,0,0,0,0,0,0,0.343143423810856,0.413536052245775,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,6.40986253728404,5.77566499444116,0,0,0,0.386682873168488,0.308097234229289,0.307007349452259,0,0.322260734604821,0.435050081742686,0,0.356128142586949,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.953150969619124,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.818149460017238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,0.124252535565433,0,0,0.104602846312333,0.101998217636322,0,1.20084057741958,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.851940108927109,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0.233713309847224,0,0.568209015825267,0,0,0,0,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0.450772826991655,0.380805212168795,0,0.727394636810238,0,0,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0.381382095467167,0,2.78482710962785,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.255640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0.743990036333503,0.462175628631418,0,0,0.218531143927391,0.126698501011437,0,0,0,0,0.606229585745915,0.535928260312357,0.829169439458779,0,0.213233981900981,0,0.0645889098360061,0.124149428591716,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p24@RUNX2 | |short_description=p24@RUNX2 | ||
}} | }} |
Latest revision as of 01:04, 19 September 2015
Short description: | p24@RUNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_RUNX2_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_NM_001015051, NM_001024630, uc011dvx.1, uc011dvy.1_5end |
EntrezGene: | RUNX2 |
HGNC: | 10472 |
UniProt: | Q13950 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.85e-35 | 3 |
oligodendrocyte | 6.09e-27 | 7 |
macroglial cell | 6.09e-27 | 7 |
astrocyte | 6.09e-27 | 7 |
oligodendrocyte precursor cell | 6.09e-27 | 7 |
ciliated cell | 1.00e-16 | 3 |
ciliated epithelial cell | 1.00e-16 | 3 |
multi-ciliated epithelial cell | 1.00e-16 | 3 |
non-pigmented ciliary epithelial cell | 1.00e-16 | 3 |
glial cell (sensu Vertebrata) | 2.82e-11 | 15 |
glial cell | 2.82e-11 | 15 |
glioblast | 2.82e-11 | 15 |
glioblast (sensu Vertebrata) | 2.82e-11 | 15 |
osteoblast | 1.83e-10 | 11 |
osteoprogenitor cell | 1.83e-10 | 11 |
mesenchyme condensation cell | 1.83e-10 | 11 |
neuron associated cell | 4.11e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 4.11e-10 | 17 |
fibroblast of periodontium | 8.57e-09 | 6 |
neural cell | 3.58e-07 | 25 |
outer root sheath cell | 3.70e-07 | 2 |
ectodermal cell | 3.81e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.00e-16 | 3 |
ciliary body | 1.00e-16 | 3 |
atypical epithelium | 8.67e-13 | 4 |
vasculature of eye | 7.93e-09 | 6 |
uvea | 7.93e-09 | 6 |
vasculature of head | 7.93e-09 | 6 |
periodontium | 8.57e-09 | 6 |
dentition | 8.57e-09 | 6 |
skull | 1.17e-07 | 7 |
hair root sheath | 3.70e-07 | 2 |
hair outer root sheath | 3.70e-07 | 2 |
bulb of hair follicle | 3.70e-07 | 2 |
globus pallidus | 4.42e-07 | 2 |
pallidum | 4.42e-07 | 2 |