FFCP PHASE1:Hg19::chr3:52739741..52739760,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55830 | |EntrezGene=55830 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24870 | |HGNC=24870 | ||
|TSSclassifier=strong | |||
|UniProt=C9JNB0 | |UniProt=C9JNB0 | ||
|association_with_transcript=19bp_to_ENST00000487642_5end | |association_with_transcript=19bp_to_ENST00000487642_5end | ||
|cluster_id=chr3:52739741..52739760,- | |||
|description=CAGE_peak_4_at_GLT8D1_5end | |description=CAGE_peak_4_at_GLT8D1_5end | ||
|id=chr3:52739741..52739760,- | |id=chr3:52739741..52739760,- | ||
|ontology_enrichment_celltype=CL:0000055!3.75e-23!180;CL:0000057!2.60e-12!75;CL:0000680!5.80e-09!57;CL:0000056!5.80e-09!57;CL:0000355!5.80e-09!57;CL:0000187!5.36e-08!54;CL:0002334!1.07e-07!12;CL:0002371!3.31e-07!591 | |ontology_enrichment_celltype=CL:0000055!3.75e-23!180;CL:0000057!2.60e-12!75;CL:0000680!5.80e-09!57;CL:0000056!5.80e-09!57;CL:0000355!5.80e-09!57;CL:0000187!5.36e-08!54;CL:0002334!1.07e-07!12;CL:0002371!3.31e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0002334;5.98e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.46e-12,76;CL:0000680,4.00e-09,58;CL:0000056,4.00e-09,58;CL:0000355,4.00e-09,58;CL:0000187,3.73e-08,55;CL:0002334,1.01e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!6.19e-10!95;UBERON:0000914!1.30e-09!83;UBERON:0002329!1.30e-09!83;UBERON:0003077!1.30e-09!83;UBERON:0003059!1.30e-09!83;UBERON:0007282!1.30e-09!83;UBERON:0009618!1.30e-09!83;UBERON:0007285!1.30e-09!83;UBERON:0002199!1.33e-08!45;UBERON:0002416!1.33e-08!45;UBERON:0000475!1.40e-08!365;UBERON:0004290!1.37e-07!70;UBERON:0001134!2.21e-07!61;UBERON:0002036!2.21e-07!61;UBERON:0003082!2.21e-07!61;UBERON:0002385!3.00e-07!63;UBERON:0001015!3.00e-07!63;UBERON:0000383!3.00e-07!63;UBERON:0002097!8.55e-07!40;UBERON:0000486!9.26e-07!82 | |ontology_enrichment_uberon=UBERON:0003102!6.19e-10!95;UBERON:0000914!1.30e-09!83;UBERON:0002329!1.30e-09!83;UBERON:0003077!1.30e-09!83;UBERON:0003059!1.30e-09!83;UBERON:0007282!1.30e-09!83;UBERON:0009618!1.30e-09!83;UBERON:0007285!1.30e-09!83;UBERON:0002199!1.33e-08!45;UBERON:0002416!1.33e-08!45;UBERON:0000475!1.40e-08!365;UBERON:0004290!1.37e-07!70;UBERON:0001134!2.21e-07!61;UBERON:0002036!2.21e-07!61;UBERON:0003082!2.21e-07!61;UBERON:0002385!3.00e-07!63;UBERON:0001015!3.00e-07!63;UBERON:0000383!3.00e-07!63;UBERON:0002097!8.55e-07!40;UBERON:0000486!9.26e-07!82 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.64e-11,99;UBERON:0002199,3.96e-09,46;UBERON:0002416,3.96e-09,46;UBERON:0007524,8.70e-08,73;UBERON:0002329,1.07e-07,71;UBERON:0003059,1.07e-07,71;UBERON:0007282,1.07e-07,71;UBERON:0004290,1.07e-07,71;UBERON:0009618,1.07e-07,71;UBERON:0001134,1.74e-07,62;UBERON:0002036,1.74e-07,62;UBERON:0003082,1.74e-07,62;UBERON:0003077,2.09e-07,72;UBERON:0007285,2.09e-07,72;UBERON:0002385,2.36e-07,64;UBERON:0001015,2.36e-07,64;UBERON:0000383,2.36e-07,64;UBERON:0002097,2.76e-07,41;UBERON:0000486,9.27e-07,83 | |||
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| ||
|short_description=p4@GLT8D1 | |short_description=p4@GLT8D1 | ||
}} | }} |
Latest revision as of 00:46, 19 September 2015
Short description: | p4@GLT8D1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GLT8D1_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000487642_5end |
EntrezGene: | GLT8D1 |
HGNC: | 24870 |
UniProt: | C9JNB0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.46e-12 | 76 |
muscle precursor cell | 4.00e-09 | 58 |
myoblast | 4.00e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.00e-09 | 58 |
muscle cell | 3.73e-08 | 55 |
preadipocyte | 1.01e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.64e-11 | 99 |
integument | 3.96e-09 | 46 |
integumental system | 3.96e-09 | 46 |
dense mesenchyme tissue | 8.70e-08 | 73 |
somite | 1.07e-07 | 71 |
presomitic mesoderm | 1.07e-07 | 71 |
presumptive segmental plate | 1.07e-07 | 71 |
dermomyotome | 1.07e-07 | 71 |
trunk paraxial mesoderm | 1.07e-07 | 71 |
skeletal muscle tissue | 1.74e-07 | 62 |
striated muscle tissue | 1.74e-07 | 62 |
myotome | 1.74e-07 | 62 |
paraxial mesoderm | 2.09e-07 | 72 |
presumptive paraxial mesoderm | 2.09e-07 | 72 |
muscle tissue | 2.36e-07 | 64 |
musculature | 2.36e-07 | 64 |
musculature of body | 2.36e-07 | 64 |
skin of body | 2.76e-07 | 41 |
multilaminar epithelium | 9.27e-07 | 83 |