FFCP PHASE1:Hg19::chr10:70480963..70481010,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:70480963..70481010,+
|short_description=p1@CCAR1
|description=CAGE_peak_1_at_CCAR1_5end
|association_with_transcript=0bp_to_ENST00000265872,ENST0000049490...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55749 | |EntrezGene=55749 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24236 | |HGNC=24236 | ||
|UniProt=Q8IX12, | |TSSclassifier=strong | ||
|UniProt=Q8IX12,F5H808,F5H1H2,F5H7M9,F5H3E1,F5H2E6,F5H1L3 | |||
|association_with_transcript=0bp_to_ENST00000265872,ENST00000494903,ENST00000535016,ENST00000536012,ENST00000538031,ENST00000539539,ENST00000541012,ENST00000543225,ENST00000543229,ENST00000543719,NM_018237,uc001jol.1,uc001jom.1,uc001jon.1,uc001joo.2,uc009xpx.1,uc010qiz.1,uc010qja.1,uc010qjb.1_5end | |||
|cluster_id=chr10:70480963..70481010,+ | |||
|coexpression_cluster_id=C3037 | |||
|description=CAGE_peak_1_at_CCAR1_5end | |||
|id=chr10:70480963..70481010,+ | |||
|ontology_enrichment_celltype=CL:0002032!4.69e-08!165;CL:0000837!4.69e-08!165;CL:0000037!5.09e-08!172;CL:0000566!5.09e-08!172;CL:0000988!7.36e-07!182 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,2.64e-07,161;CL:0000837,2.64e-07,161;CL:0000037,2.81e-07,168 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.73e-23!235;DOID:14566!3.09e-22!239;DOID:0050686!4.37e-14!137;DOID:0050687!5.46e-14!143;DOID:2531!4.86e-12!51;DOID:0060083!4.86e-12!51;DOID:1240!3.73e-11!39;DOID:8692!3.34e-10!31;DOID:305!2.35e-09!106;DOID:3095!7.84e-08!22;DOID:2994!7.84e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:8692;5.28e-10;31!DOID:1240;2.54e-09;39!DOID:3095;7.53e-08;22!DOID:2994;7.53e-08;22!DOID:2531;8.89e-08;51!DOID:0060083;8.89e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.73e-23,235;DOID:14566,3.09e-22,239;DOID:0050686,4.37e-14,137;DOID:0050687,5.46e-14,143;DOID:2531,4.86e-12,51;DOID:0060083,4.86e-12,51;DOID:1240,3.73e-11,39;DOID:8692,3.34e-10,31;DOID:305,2.35e-09,106;DOID:3095,7.84e-08,22;DOID:2994,7.84e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.69e-09!94;UBERON:0001016!1.69e-09!94;UBERON:0001017!2.18e-08!82;UBERON:0005743!1.68e-07!86;UBERON:0007023!5.02e-07!115;UBERON:0001049!5.38e-07!57;UBERON:0005068!5.38e-07!57;UBERON:0006241!5.38e-07!57;UBERON:0007135!5.38e-07!57;UBERON:0002780!6.76e-07!41;UBERON:0001890!6.76e-07!41;UBERON:0006240!6.76e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.22e-10,89;UBERON:0001017,1.61e-08,81;UBERON:0001049,3.79e-07,56;UBERON:0005068,3.79e-07,56;UBERON:0006241,3.79e-07,56;UBERON:0007135,3.79e-07,56;UBERON:0002780,6.76e-07,41;UBERON:0001890,6.76e-07,41;UBERON:0003080,6.76e-07,41;UBERON:0006240,6.76e-07,41;UBERON:0007023,7.76e-07,114;UBERON:0000955,8.83e-07,68;UBERON:0006238,8.83e-07,68 | |||
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| ||
|short_description=p1@CCAR1 | |||
}} | }} |
Latest revision as of 23:28, 18 September 2015
Short description: | p1@CCAR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCAR1_5end |
Coexpression cluster: | C3037_Mast_acute_osteosarcoma_hepatoblastoma_lung_Myoblast_salivary |
Association with transcript: | 0bp_to_ENST00000265872, ENST00000494903, ENST00000535016, ENST00000536012, ENST00000538031, ENST00000539539, ENST00000541012, ENST00000543225, ENST00000543229, ENST00000543719, NM_018237, uc001jol.1, uc001jom.1, uc001jon.1, uc001joo.2, uc009xpx.1, uc010qiz.1, uc010qja.1, uc010qjb.1_5end |
EntrezGene: | CCAR1 |
HGNC: | 24236 |
UniProt: | Q8IX12F5H808F5H1H2F5H7M9F5H3E1F5H2E6F5H1L3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 2.64e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.64e-07 | 161 |
hematopoietic stem cell | 2.81e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.22e-10 | 89 |
central nervous system | 1.61e-08 | 81 |
neural tube | 3.79e-07 | 56 |
neural rod | 3.79e-07 | 56 |
future spinal cord | 3.79e-07 | 56 |
neural keel | 3.79e-07 | 56 |
regional part of forebrain | 6.76e-07 | 41 |
forebrain | 6.76e-07 | 41 |
anterior neural tube | 6.76e-07 | 41 |
future forebrain | 6.76e-07 | 41 |
adult organism | 7.76e-07 | 114 |
brain | 8.83e-07 | 68 |
future brain | 8.83e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.73e-23 | 235 |
disease of cellular proliferation | 3.09e-22 | 239 |
organ system cancer | 4.37e-14 | 137 |
cell type cancer | 5.46e-14 | 143 |
hematologic cancer | 4.86e-12 | 51 |
immune system cancer | 4.86e-12 | 51 |
leukemia | 3.73e-11 | 39 |
myeloid leukemia | 3.34e-10 | 31 |
carcinoma | 2.35e-09 | 106 |
germ cell and embryonal cancer | 7.84e-08 | 22 |
germ cell cancer | 7.84e-08 | 22 |