FFCP PHASE1:Hg19::chr17:18343257..18343267,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=6420 | |HGNC=6420 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_ENST00000399124_5end | |association_with_transcript=-31bp_to_ENST00000399124_5end | ||
|cluster_id=chr17:18343257..18343267,+ | |||
|coexpression_cluster_id=C406 | |coexpression_cluster_id=C406 | ||
|description=CAGE_peak_2_at_KRT16P1_5end | |description=CAGE_peak_2_at_KRT16P1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002166!6.07e-75!3;CL:0002159!5.41e-18!13;CL:0001014!1.21e-13!2;CL:0001016!1.21e-13!2;CL:0002077!1.67e-12!33;CL:0002541!1.41e-09!3 | |ontology_enrichment_celltype=CL:0002166!6.07e-75!3;CL:0002159!5.41e-18!13;CL:0001014!1.21e-13!2;CL:0001016!1.21e-13!2;CL:0002077!1.67e-12!33;CL:0002541!1.41e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0002166;4.26e-118;3!CL:0002159;3.31e-26;14!CL:0002541;1.96e-14;3!CL:0002077;1.66e-09;34!CL:0000349;2.41e-09;19!CL:0002537;2.97e-09;5 | |ontology_enrichment_celltype_v019=CL:0002166;4.26e-118;3!CL:0002159;3.31e-26;14!CL:0002541;1.96e-14;3!CL:0002077;1.66e-09;34!CL:0000349;2.41e-09;19!CL:0002537;2.97e-09;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002166,3.48e-118,3;CL:0002159,3.17e-26,14;CL:0002541,2.09e-14,3;CL:0002077,2.48e-11,34;CL:0000349,2.46e-09,19;CL:0002537,2.97e-09,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001708!1.78e-56!4;UBERON:0001704!1.78e-56!4;UBERON:0002090!5.56e-38!6;UBERON:0003129!4.06e-21!11;UBERON:0000075!5.41e-18!13;UBERON:0005944!5.41e-18!13;UBERON:0004288!5.41e-18!13;UBERON:0003089!5.41e-18!13;UBERON:0000476!1.41e-09!3;UBERON:0000920!1.41e-09!3;UBERON:0005631!4.49e-08!14;UBERON:0000158!4.49e-08!14 | |ontology_enrichment_uberon=UBERON:0001708!1.78e-56!4;UBERON:0001704!1.78e-56!4;UBERON:0002090!5.56e-38!6;UBERON:0003129!4.06e-21!11;UBERON:0000075!5.41e-18!13;UBERON:0005944!5.41e-18!13;UBERON:0004288!5.41e-18!13;UBERON:0003089!5.41e-18!13;UBERON:0000476!1.41e-09!3;UBERON:0000920!1.41e-09!3;UBERON:0005631!4.49e-08!14;UBERON:0000158!4.49e-08!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0001708;6.65e-89;4!UBERON:0008895;6.65e-89;4!UBERON:0011159;2.24e-71;5!UBERON:0011137;4.54e-33;11!UBERON:0010323;4.54e-33;11!UBERON:0000075;4.67e-23;16!UBERON:0005631;8.46e-17;10!UBERON:0000158;8.46e-17;10!UBERON:0004765;1.51e-14;26!UBERON:0003124;1.96e-14;3!UBERON:0000920;1.96e-14;3!UBERON:0001434;8.47e-11;36!UBERON:0000478;1.34e-07;24!UBERON:0000305;5.70e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0001708;6.65e-89;4!UBERON:0008895;6.65e-89;4!UBERON:0011159;2.24e-71;5!UBERON:0011137;4.54e-33;11!UBERON:0010323;4.54e-33;11!UBERON:0000075;4.67e-23;16!UBERON:0005631;8.46e-17;10!UBERON:0000158;8.46e-17;10!UBERON:0004765;1.51e-14;26!UBERON:0003124;1.96e-14;3!UBERON:0000920;1.96e-14;3!UBERON:0001434;8.47e-11;36!UBERON:0000478;1.34e-07;24!UBERON:0000305;5.70e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,5.72e-89,4;UBERON:0008895,5.72e-89,4;UBERON:0011159,1.98e-71,5;UBERON:0010188,9.96e-60,6;UBERON:0002539,9.96e-60,6;UBERON:0008816,9.96e-60,6;UBERON:0010323,4.29e-33,11;UBERON:0011137,3.17e-26,14;UBERON:0000075,4.50e-23,16;UBERON:0008814,1.28e-20,18;UBERON:0000920,2.09e-14,3;UBERON:0005631,2.66e-12,14;UBERON:0000158,2.66e-12,14;UBERON:0000478,1.36e-07,24;UBERON:0000033,3.53e-07,56;UBERON:0000305,5.70e-07,7;UBERON:0003124,6.39e-07,7 | |||
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|short_description=p2@KRT16P1 | |short_description=p2@KRT16P1 | ||
}} | }} |
Latest revision as of 23:10, 18 September 2015
Short description: | p2@KRT16P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_KRT16P1_5end |
Coexpression cluster: | C406_Mallassezderived_Mesothelial_mesenchymal_chorionic_Gingival_Placental_Prostate |
Association with transcript: | -31bp_to_ENST00000399124_5end |
EntrezGene: | NA |
HGNC: | 6420 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 3.48e-118 | 3 |
general ecto-epithelial cell | 3.17e-26 | 14 |
chorionic membrane mesenchymal stem cell | 2.09e-14 | 3 |
ecto-epithelial cell | 2.48e-11 | 34 |
extraembryonic cell | 2.46e-09 | 19 |
amnion mesenchymal stem cell | 2.97e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 5.72e-89 | 4 |
splanchnocranium | 5.72e-89 | 4 |
primary subdivision of cranial skeletal system | 1.98e-71 | 5 |
protuberance | 9.96e-60 | 6 |
pharyngeal arch | 9.96e-60 | 6 |
embryonic head | 9.96e-60 | 6 |
cranial skeletal system | 4.29e-33 | 11 |
axial skeletal system | 3.17e-26 | 14 |
subdivision of skeletal system | 4.50e-23 | 16 |
pharyngeal arch system | 1.28e-20 | 18 |
egg chorion | 2.09e-14 | 3 |
extraembryonic membrane | 2.66e-12 | 14 |
membranous layer | 2.66e-12 | 14 |
extraembryonic structure | 1.36e-07 | 24 |
head | 3.53e-07 | 56 |
amnion | 5.70e-07 | 7 |
chorion | 6.39e-07 | 7 |