FFCP PHASE1:Hg19::chr21:47545703..47545747,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:47545703..47545747,+ to FFCP PHASE1:Hg19::chr21:47545703..47545747,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-149bp_to_AL360197_5end | |||
|cluster_id=chr21:47545703..47545747,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_15_at_COL6A2_5end | |||
|id=chr21:47545703..47545747,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.82e-42!180;CL:0000057!2.24e-23!75;CL:0000680!5.40e-21!57;CL:0000056!5.40e-21!57;CL:0000355!5.40e-21!57;CL:0000187!3.87e-20!54;CL:0000183!1.61e-19!59;CL:0000393!2.13e-18!60;CL:0000211!2.13e-18!60;CL:0000192!7.02e-17!42;CL:0000514!7.02e-17!42;CL:0000048!9.44e-14!430;CL:0000359!3.97e-13!32;CL:0000723!1.13e-12!436;CL:0000034!4.52e-12!444;CL:0002620!5.37e-10!23;CL:0000222!3.17e-08!119;CL:0000499!4.02e-07!27;CL:0002570!6.03e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.68e-12;55!CL:0002620;7.11e-12;23!CL:0000723;3.88e-11;61!CL:0000359;1.09e-10;32!CL:0000192;1.36e-10;43!CL:0000187;1.57e-10;55!CL:0000048;3.56e-10;58!CL:0000057;7.21e-10;73!CL:0000393;9.96e-10;61!CL:0000211;9.96e-10;61!CL:0002570;8.02e-09;8!CL:0002320;2.16e-08;188!CL:0000034;1.16e-07;69!CL:0000499;6.89e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.77e-25,76;CL:0000048,2.77e-20,427;CL:0000723,2.58e-19,433;CL:0000680,7.07e-19,58;CL:0000056,7.07e-19,58;CL:0000355,7.07e-19,58;CL:0000187,1.57e-18,55;CL:0000034,4.48e-18,441;CL:0000393,3.97e-16,61;CL:0000211,3.97e-16,61;CL:0000192,1.46e-14,43;CL:0000514,1.46e-14,43;CL:0002620,2.78e-12,23;CL:0000359,5.31e-11,32;CL:0002320,1.92e-10,361;CL:0002570,8.50e-09,8;CL:0000134,3.43e-08,354;CL:0000499,6.40e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000514;1.36e-10;43!CL:0000355;3.79e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.26e-28!83;UBERON:0002329!9.26e-28!83;UBERON:0003077!9.26e-28!83;UBERON:0003059!9.26e-28!83;UBERON:0007282!9.26e-28!83;UBERON:0009618!9.26e-28!83;UBERON:0007285!9.26e-28!83;UBERON:0004290!6.17e-26!70;UBERON:0002385!9.36e-22!63;UBERON:0001015!9.36e-22!63;UBERON:0000383!9.36e-22!63;UBERON:0000486!1.39e-21!82;UBERON:0001134!2.34e-21!61;UBERON:0002036!2.34e-21!61;UBERON:0003082!2.34e-21!61;UBERON:0005256!6.42e-19!143;UBERON:0002100!1.33e-12!216;UBERON:0003104!1.64e-10!238;UBERON:0009142!1.64e-10!238;UBERON:0004573!1.97e-10!33;UBERON:0004571!1.97e-10!33;UBERON:0003102!2.82e-10!95;UBERON:0001637!5.92e-10!42;UBERON:0003509!5.92e-10!42;UBERON:0004572!5.92e-10!42;UBERON:0002199!1.06e-09!45;UBERON:0002416!1.06e-09!45;UBERON:0004872!4.10e-09!84;UBERON:0000475!6.71e-09!365;UBERON:0000481!2.26e-08!347;UBERON:0001013!5.59e-08!14;UBERON:0001135!1.40e-07!15;UBERON:0000490!1.63e-07!138;UBERON:0002049!2.03e-07!79;UBERON:0007798!2.03e-07!79;UBERON:0001981!2.68e-07!60;UBERON:0007500!2.68e-07!60;UBERON:0004537!2.68e-07!60;UBERON:0006965!2.68e-07!60;UBERON:0002097!2.90e-07!40;UBERON:0000926!7.73e-07!448;UBERON:0004120!7.73e-07!448;UBERON:0006603!7.73e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.83e-11;31!UBERON:0001015;1.83e-11;31!UBERON:0000383;1.83e-11;31!UBERON:0004573;9.45e-10;33!UBERON:0004571;9.45e-10;33!UBERON:0002204;1.49e-09;70!UBERON:0001013;1.92e-09;14!UBERON:0002199;3.12e-09;46!UBERON:0002416;3.12e-09;46!UBERON:0002384;7.25e-09;198!UBERON:0002097;7.88e-08;41!UBERON:0003102;8.34e-08;50!UBERON:0001637;1.70e-07;42!UBERON:0003509;1.70e-07;42!UBERON:0004572;1.70e-07;42!UBERON:0002067;2.69e-07;9!UBERON:0001135;2.80e-07;15!UBERON:0004905;9.16e-07;8!UBERON:0000982;9.16e-07;8!UBERON:0004770;9.16e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,8.54e-25,73;UBERON:0002329,1.24e-24,71;UBERON:0003059,1.24e-24,71;UBERON:0007282,1.24e-24,71;UBERON:0004290,1.24e-24,71;UBERON:0009618,1.24e-24,71;UBERON:0003077,5.07e-24,72;UBERON:0007285,5.07e-24,72;UBERON:0000486,8.84e-21,83;UBERON:0007503,1.04e-20,78;UBERON:0002385,4.48e-19,64;UBERON:0001015,4.48e-19,64;UBERON:0000383,4.48e-19,64;UBERON:0001134,5.11e-19,62;UBERON:0002036,5.11e-19,62;UBERON:0003082,5.11e-19,62;UBERON:0005256,4.01e-17,122;UBERON:0003104,2.56e-16,160;UBERON:0009142,2.56e-16,160;UBERON:0002199,4.88e-14,46;UBERON:0002416,4.88e-14,46;UBERON:0003102,1.72e-11,99;UBERON:0000926,7.93e-11,315;UBERON:0004120,7.93e-11,315;UBERON:0006603,7.93e-11,315;UBERON:0002097,1.23e-10,41;UBERON:0000490,2.48e-10,148;UBERON:0004573,2.81e-10,33;UBERON:0004571,2.81e-10,33;UBERON:0002384,5.34e-10,371;UBERON:0001013,1.93e-09,14;UBERON:0001637,2.35e-09,42;UBERON:0003509,2.35e-09,42;UBERON:0004572,2.35e-09,42;UBERON:0002100,3.75e-08,199;UBERON:0002204,8.29e-08,167;UBERON:0002067,1.81e-07,9;UBERON:0004016,1.81e-07,9;UBERON:0010083,1.81e-07,9;UBERON:0004872,2.32e-07,83;UBERON:0001135,4.43e-07,15;UBERON:0004905,8.55e-07,8;UBERON:0000982,8.55e-07,8;UBERON:0004770,8.55e-07,8 | |||
|phase1_expression=1.2717486548939,4.92431204949261,1.69145284915165,0,5.81049422755474,5.23403114460221,2.53299878168311,2.52687949370732,7.31319758959548,0,0,0,0,3.83675694176145,7.95353701746998,10.0848771967766,9.04041792035965,5.84248072309899,8.29485757943862,0.246242116153576,2.04000691244253,1.88072832886853,0.286235987131057,0.684372125364421,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0.144824403882799,4.87613732627923,0,0.767175371061182,0.722878304769133,7.52006865953834,10.2841028462185,2.3858578411533,2.91980922181582,0.378139268656271,0,0.527008714158756,0.261958150995425,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,1.62028389576352,0,0,0,0,0,0,0,0,0,0,2.15271869829786,1.05927344650575,8.60509862246441,3.19201543978521,3.36406560085384,0,3.20667812942308,0,1.34710672069688,1.79808093424805,0.756787138224657,2.88087962239999,0.937285727335186,3.74592092196385,1.1409436430889,9.41526687476347,2.3486899728753,1.61872944368132,1.96631129383148,1.02077085627447,7.73856199064138,2.9964476540972,3.56400857184616,10.3852110296994,1.82032272387605,4.31170885089743,1.0100166837244,1.00094815897571,0.831192346452549,2.19488810440419,7.04921930337745,4.95785594391769,0.680593098960126,1.07633781413317,5.55249210928275,4.23863802319124,6.60200411385685,2.26715564324566,2.57640540045629,2.97786970130544,4.05063197379039,1.85130309806277,1.7670364197088,2.94559675655358,4.36444353410792,5.32514388774922,1.81353776809752,1.86516651541536,0,0,0,0,0.265059536642971,0.116193942869518,0,0.252320850875628,0.36497735907583,7.8224766164908,31.5188059714514,2.76269842704961,5.57241513638375,10.8281922250438,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.6462960453256,10.2906097969879,0,0,0,0,0,0,0,0,0,0,0.651616610620649,3.11980435583874,1.44331342025273,0.115930404975077,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0.126995788584338,0,0,1.71072446022705,1.13110241973656,0,0,0.224262168690721,0,1.1734125731352,1.03417372606222,14.3062578340753,15.215449546008,1.59562869950922,1.04007436911366,2.31486636835928,0,2.1313774321288,3.14551586047925,4.88359444852299,2.46972101034231,2.28015329005615,3.19852753868291,0.791951872933429,1.20575750823834,0,0.699810938274399,0,0,0,2.39624855491583,2.29723871668228,0,1.73737568001095,2.26023954805422,0.716243852959582,0,0,0.646882724578552,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,4.2942022101699,7.50255781589516,8.13795071099207,4.78332981520856,5.70972764150918,3.46945313074656,1.99140405487612,1.50473049863859,2.27407504055985,3.10419213877515,1.32845119707087,2.39679919104214,3.99664626553181,1.17480694477644,4.46086450954113,0,0,0,0,0,0,0.496215615637554,0.920771839728375,8.13914273855913,1.53766979106841,2.55853624533352,2.2519548960105,0,11.5657270351992,11.8966355959795,1.31403449622095,9.34657972530518,10.2265133044764,0,0,0,2.18147451512753,8.01201139229555,8.65421138732199,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.309123034943167,0.366277859273374,0.165018999841176,0,0,1.6068392984416,4.93020663289822,3.38906957652218,2.91656981979646,2.34322173223702,1.82614416276065,7.1058180017972,3.40906509664404,3.38321735457602,0,0,0,0,0.929691098594572,4.09256050879832,0.6970372701606,2.15623506123262,1.06461206063404,1.73986598415015,4.26245703939016,0.715624433709956,1.48863347743867,0.949138274156178,2.47819252100972,1.02359116524534,1.71175595213568,3.81843897511124,1.56989728039846,1.43897966066652,5.21620356498504,3.18093486333353,0.606547444719948,1.58510321173008,3.37006764991185,0.975267478179181,4.87426979262569,4.22600587027022,1.77449884830381,5.37340641424108,1.13008116620243,2.75682671773062,5.30751180192976,3.06915619677634,2.89387767133344,3.27947376023316,0.405820753925408,3.717881977197,1.12678241012897,0.717056761020258,1.17898849215745,1.07001315444375,0.709522128141196,7.38876723541824,8.23237232399755,1.51789269506286,3.84928192269481,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,1.67121139316383,0,0,0,0.140669416410513,0.667852230137435,0,0.211125408127993,2.98871982376605,0.552567831062295,0,0,0,7.15391051622157,0,0,0,1.1837208676432,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.69290568708354,0.227884111694002,0,0,0,0.31900115973192,0.457987967009312,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.265372693510018,0,0,0,0,0,3.21031058919516,0,0,0,0,0.789168805698781,0,0.30607276163049,0.442306057399416,0,0,1.32930774541437,0.330991955875499,0,0,0.284609546029793,0.277349346026277,0,0,0,2.44617335538842,0.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| ||
|short_description=p15@COL6A2 | |||
}} | }} |
Latest revision as of 23:03, 18 September 2015
Short description: | p15@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -149bp_to_AL360197_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.77e-25 | 76 |
multi fate stem cell | 2.77e-20 | 427 |
somatic stem cell | 2.58e-19 | 433 |
muscle precursor cell | 7.07e-19 | 58 |
myoblast | 7.07e-19 | 58 |
multi-potent skeletal muscle stem cell | 7.07e-19 | 58 |
muscle cell | 1.57e-18 | 55 |
stem cell | 4.48e-18 | 441 |
electrically responsive cell | 3.97e-16 | 61 |
electrically active cell | 3.97e-16 | 61 |
smooth muscle cell | 1.46e-14 | 43 |
smooth muscle myoblast | 1.46e-14 | 43 |
skin fibroblast | 2.78e-12 | 23 |
vascular associated smooth muscle cell | 5.31e-11 | 32 |
connective tissue cell | 1.92e-10 | 361 |
mesenchymal stem cell of adipose | 8.50e-09 | 8 |
mesenchymal cell | 3.43e-08 | 354 |
stromal cell | 6.40e-07 | 28 |