FFCP PHASE1:Hg19::chr21:47518637..47518688,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=C9JH44 | |UniProt=C9JH44 | ||
|association_with_transcript=-22bp_to_ENST00000436769_5end | |association_with_transcript=-22bp_to_ENST00000436769_5end | ||
|cluster_id=chr21:47518637..47518688,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_2_at_COL6A2_5end | |description=CAGE_peak_2_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!4.17e-53!180;CL:0000057!6.59e-30!75;CL:0000680!2.18e-22!57;CL:0000056!2.18e-22!57;CL:0000355!2.18e-22!57;CL:0000187!1.79e-21!54;CL:0000183!3.09e-20!59;CL:0000393!6.80e-19!60;CL:0000211!6.80e-19!60;CL:0000048!2.45e-17!430;CL:0000192!4.86e-17!42;CL:0000514!4.86e-17!42;CL:0000723!4.77e-16!436;CL:0000034!6.48e-15!444;CL:0000359!1.24e-13!32;CL:0002620!3.33e-11!23;CL:0002371!5.69e-09!591;CL:0002570!2.13e-07!8;CL:0002334!2.77e-07!12;CL:0000222!3.97e-07!119;CL:0000136!6.90e-07!15;CL:0002320!7.20e-07!365 | |ontology_enrichment_celltype=CL:0000055!4.17e-53!180;CL:0000057!6.59e-30!75;CL:0000680!2.18e-22!57;CL:0000056!2.18e-22!57;CL:0000355!2.18e-22!57;CL:0000187!1.79e-21!54;CL:0000183!3.09e-20!59;CL:0000393!6.80e-19!60;CL:0000211!6.80e-19!60;CL:0000048!2.45e-17!430;CL:0000192!4.86e-17!42;CL:0000514!4.86e-17!42;CL:0000723!4.77e-16!436;CL:0000034!6.48e-15!444;CL:0000359!1.24e-13!32;CL:0002620!3.33e-11!23;CL:0002371!5.69e-09!591;CL:0002570!2.13e-07!8;CL:0002334!2.77e-07!12;CL:0000222!3.97e-07!119;CL:0000136!6.90e-07!15;CL:0002320!7.20e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000359;9.54e-15;32!CL:0000192;2.31e-14;43!CL:0000187;3.48e-14;55!CL:0000057;5.34e-14;73!CL:0002620;7.65e-13;23!CL:0000723;1.40e-11;61!CL:0000393;2.52e-11;61!CL:0000211;2.52e-11;61!CL:0000134;6.02e-11;55!CL:0000048;1.29e-10;58!CL:0002320;1.86e-10;188!CL:0002570;2.48e-08;8!CL:0002334;3.28e-08;12!CL:0000034;1.05e-07;69!CL:0000499;2.37e-07;28!CL:0000188;4.91e-07;9 | |ontology_enrichment_celltype_v019=CL:0000359;9.54e-15;32!CL:0000192;2.31e-14;43!CL:0000187;3.48e-14;55!CL:0000057;5.34e-14;73!CL:0002620;7.65e-13;23!CL:0000723;1.40e-11;61!CL:0000393;2.52e-11;61!CL:0000211;2.52e-11;61!CL:0000134;6.02e-11;55!CL:0000048;1.29e-10;58!CL:0002320;1.86e-10;188!CL:0002570;2.48e-08;8!CL:0002334;3.28e-08;12!CL:0000034;1.05e-07;69!CL:0000499;2.37e-07;28!CL:0000188;4.91e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.85e-34,76;CL:0000680,2.72e-26,58;CL:0000056,2.72e-26,58;CL:0000355,2.72e-26,58;CL:0000187,3.13e-25,55;CL:0000048,3.46e-25,427;CL:0000723,6.98e-24,433;CL:0000034,3.26e-22,441;CL:0000393,1.07e-20,61;CL:0000211,1.07e-20,61;CL:0000192,6.26e-20,43;CL:0000514,6.26e-20,43;CL:0000359,1.49e-15,32;CL:0002620,6.89e-13,23;CL:0002320,3.03e-11,361;CL:0000134,4.51e-09,354;CL:0002570,2.50e-08,8;CL:0002334,3.38e-08,12;CL:0000219,5.26e-08,386;CL:0000499,2.08e-07,28;CL:0000136,4.03e-07,15;CL:0000188,4.57e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000514;2.31e-14;43!CL:0000355;4.09e-14;58 | |ontology_enrichment_development_v019=CL:0000514;2.31e-14;43!CL:0000355;4.09e-14;58 | ||
|ontology_enrichment_disease=DOID:2394!9.62e-07!14 | |ontology_enrichment_disease=DOID:2394!9.62e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;9.98e-08;14 | |ontology_enrichment_disease_v019=DOID:2394;9.98e-08;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.02e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.66e-29!83;UBERON:0002329!1.66e-29!83;UBERON:0003077!1.66e-29!83;UBERON:0003059!1.66e-29!83;UBERON:0007282!1.66e-29!83;UBERON:0009618!1.66e-29!83;UBERON:0007285!1.66e-29!83;UBERON:0004290!2.05e-27!70;UBERON:0000486!8.56e-23!82;UBERON:0002385!3.71e-22!63;UBERON:0001015!3.71e-22!63;UBERON:0000383!3.71e-22!63;UBERON:0001134!5.61e-22!61;UBERON:0002036!5.61e-22!61;UBERON:0003082!5.61e-22!61;UBERON:0005256!3.48e-18!143;UBERON:0003102!1.82e-12!95;UBERON:0002100!4.46e-12!216;UBERON:0002199!1.56e-11!45;UBERON:0002416!1.56e-11!45;UBERON:0000475!3.51e-10!365;UBERON:0001013!5.95e-10!14;UBERON:0003104!5.59e-09!238;UBERON:0009142!5.59e-09!238;UBERON:0002097!1.27e-08!40;UBERON:0004872!1.33e-08!84;UBERON:0001637!3.62e-08!42;UBERON:0003509!3.62e-08!42;UBERON:0004572!3.62e-08!42;UBERON:0004573!4.04e-08!33;UBERON:0004571!4.04e-08!33;UBERON:0002384!1.71e-07!375;UBERON:0002049!3.36e-07!79;UBERON:0007798!3.36e-07!79;UBERON:0000481!5.05e-07!347;UBERON:0002067!5.93e-07!9;UBERON:0004016!5.93e-07!9;UBERON:0010083!5.93e-07!9;UBERON:0001135!6.21e-07!15;UBERON:0000490!6.54e-07!138 | |ontology_enrichment_uberon=UBERON:0000914!1.66e-29!83;UBERON:0002329!1.66e-29!83;UBERON:0003077!1.66e-29!83;UBERON:0003059!1.66e-29!83;UBERON:0007282!1.66e-29!83;UBERON:0009618!1.66e-29!83;UBERON:0007285!1.66e-29!83;UBERON:0004290!2.05e-27!70;UBERON:0000486!8.56e-23!82;UBERON:0002385!3.71e-22!63;UBERON:0001015!3.71e-22!63;UBERON:0000383!3.71e-22!63;UBERON:0001134!5.61e-22!61;UBERON:0002036!5.61e-22!61;UBERON:0003082!5.61e-22!61;UBERON:0005256!3.48e-18!143;UBERON:0003102!1.82e-12!95;UBERON:0002100!4.46e-12!216;UBERON:0002199!1.56e-11!45;UBERON:0002416!1.56e-11!45;UBERON:0000475!3.51e-10!365;UBERON:0001013!5.95e-10!14;UBERON:0003104!5.59e-09!238;UBERON:0009142!5.59e-09!238;UBERON:0002097!1.27e-08!40;UBERON:0004872!1.33e-08!84;UBERON:0001637!3.62e-08!42;UBERON:0003509!3.62e-08!42;UBERON:0004572!3.62e-08!42;UBERON:0004573!4.04e-08!33;UBERON:0004571!4.04e-08!33;UBERON:0002384!1.71e-07!375;UBERON:0002049!3.36e-07!79;UBERON:0007798!3.36e-07!79;UBERON:0000481!5.05e-07!347;UBERON:0002067!5.93e-07!9;UBERON:0004016!5.93e-07!9;UBERON:0010083!5.93e-07!9;UBERON:0001135!6.21e-07!15;UBERON:0000490!6.54e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.41e-12;31!UBERON:0001015;1.41e-12;31!UBERON:0000383;1.41e-12;31!UBERON:0001013;2.87e-11;14!UBERON:0002384;4.76e-11;198!UBERON:0002199;1.22e-09;46!UBERON:0002416;1.22e-09;46!UBERON:0003102;6.03e-09;50!UBERON:0004573;6.56e-09;33!UBERON:0004571;6.56e-09;33!UBERON:0002204;1.12e-08;70!UBERON:0002097;1.26e-08;41!UBERON:0002067;8.39e-08;9!UBERON:0001134;2.32e-07;16!UBERON:0002036;2.32e-07;16!UBERON:0001135;5.17e-07;15!UBERON:0001637;6.19e-07;42!UBERON:0003509;6.19e-07;42!UBERON:0004572;6.19e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0002385;1.41e-12;31!UBERON:0001015;1.41e-12;31!UBERON:0000383;1.41e-12;31!UBERON:0001013;2.87e-11;14!UBERON:0002384;4.76e-11;198!UBERON:0002199;1.22e-09;46!UBERON:0002416;1.22e-09;46!UBERON:0003102;6.03e-09;50!UBERON:0004573;6.56e-09;33!UBERON:0004571;6.56e-09;33!UBERON:0002204;1.12e-08;70!UBERON:0002097;1.26e-08;41!UBERON:0002067;8.39e-08;9!UBERON:0001134;2.32e-07;16!UBERON:0002036;2.32e-07;16!UBERON:0001135;5.17e-07;15!UBERON:0001637;6.19e-07;42!UBERON:0003509;6.19e-07;42!UBERON:0004572;6.19e-07;42 | ||
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| ||
|short_description=p2@COL6A2 | |short_description=p2@COL6A2 | ||
}} | }} |
Latest revision as of 22:44, 18 September 2015
Short description: | p2@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -22bp_to_ENST00000436769_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | C9JH44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.85e-34 | 76 |
muscle precursor cell | 2.72e-26 | 58 |
myoblast | 2.72e-26 | 58 |
multi-potent skeletal muscle stem cell | 2.72e-26 | 58 |
muscle cell | 3.13e-25 | 55 |
multi fate stem cell | 3.46e-25 | 427 |
somatic stem cell | 6.98e-24 | 433 |
stem cell | 3.26e-22 | 441 |
electrically responsive cell | 1.07e-20 | 61 |
electrically active cell | 1.07e-20 | 61 |
smooth muscle cell | 6.26e-20 | 43 |
smooth muscle myoblast | 6.26e-20 | 43 |
vascular associated smooth muscle cell | 1.49e-15 | 32 |
skin fibroblast | 6.89e-13 | 23 |
connective tissue cell | 3.03e-11 | 361 |
mesenchymal cell | 4.51e-09 | 354 |
mesenchymal stem cell of adipose | 2.50e-08 | 8 |
preadipocyte | 3.38e-08 | 12 |
motile cell | 5.26e-08 | 386 |
stromal cell | 2.08e-07 | 28 |
fat cell | 4.03e-07 | 15 |
cell of skeletal muscle | 4.57e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.02e-07 | 14 |