FFCP PHASE1:Hg19::chr21:47517478..47517529,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:47517478..47517529,+ to FFCP PHASE1:Hg19::chr21:47517478..47517529,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=P12110 | |UniProt=P12110 | ||
|association_with_transcript=-481bp_to_ENST00000300527_5end | |||
|cluster_id=chr21:47517478..47517529,+ | |||
|coexpression_cluster_id=C1421 | |||
|description=CAGE_peak_9_at_COL6A2_5end | |||
|id=chr21:47517478..47517529,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.14e-48!180;CL:0000057!3.62e-28!75;CL:0000680!4.49e-19!57;CL:0000056!4.49e-19!57;CL:0000355!4.49e-19!57;CL:0000187!3.04e-18!54;CL:0000183!3.42e-17!59;CL:0000393!5.73e-16!60;CL:0000211!5.73e-16!60;CL:0000192!1.18e-13!42;CL:0000514!1.18e-13!42;CL:0000048!1.17e-11!430;CL:0002620!6.93e-11!23;CL:0000034!8.21e-11!444;CL:0000723!1.19e-10!436;CL:0000359!1.87e-10!32;CL:0002334!7.68e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000057;2.47e-12;73!CL:0000187;5.77e-11;55!CL:0000192;6.21e-10;43!CL:0002620;6.75e-10;23!CL:0000359;7.22e-10;32!CL:0000723;1.35e-09;61!CL:0000393;3.38e-09;61!CL:0000211;3.38e-09;61!CL:0000134;3.50e-09;55!CL:0002320;8.22e-09;188!CL:0000499;2.32e-08;28!CL:0000048;2.83e-08;58!CL:0002334;4.05e-08;12!CL:0002494;9.81e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.47e-30,76;CL:0000048,5.77e-21,427;CL:0000680,1.85e-20,58;CL:0000056,1.85e-20,58;CL:0000355,1.85e-20,58;CL:0000723,6.59e-20,433;CL:0000187,2.09e-19,55;CL:0000034,1.49e-18,441;CL:0000393,6.15e-16,61;CL:0000211,6.15e-16,61;CL:0000192,9.05e-14,43;CL:0000514,9.05e-14,43;CL:0002320,1.17e-10,361;CL:0000359,3.06e-10,32;CL:0002620,4.89e-10,23;CL:0000499,2.70e-08,28;CL:0002334,2.89e-08,12;CL:0000134,2.95e-08,354;CL:0002570,8.31e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;6.40e-12;58!CL:0000514;6.21e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.95e-24!83;UBERON:0002329!7.95e-24!83;UBERON:0003077!7.95e-24!83;UBERON:0003059!7.95e-24!83;UBERON:0007282!7.95e-24!83;UBERON:0009618!7.95e-24!83;UBERON:0007285!7.95e-24!83;UBERON:0004290!3.39e-22!70;UBERON:0002385!3.34e-19!63;UBERON:0001015!3.34e-19!63;UBERON:0000383!3.34e-19!63;UBERON:0000486!1.01e-18!82;UBERON:0001134!1.43e-18!61;UBERON:0002036!1.43e-18!61;UBERON:0003082!1.43e-18!61;UBERON:0005256!1.50e-15!143;UBERON:0003102!8.09e-12!95;UBERON:0002100!1.13e-11!216;UBERON:0000475!2.24e-11!365;UBERON:0002199!7.26e-10!45;UBERON:0002416!7.26e-10!45;UBERON:0001013!6.07e-09!14;UBERON:0000481!1.99e-08!347;UBERON:0003104!2.07e-08!238;UBERON:0009142!2.07e-08!238;UBERON:0007100!3.39e-08!27;UBERON:0000948!3.55e-08!24;UBERON:0005498!3.55e-08!24;UBERON:0004140!3.55e-08!24;UBERON:0009881!3.55e-08!24;UBERON:0004141!3.55e-08!24;UBERON:0003084!3.55e-08!24;UBERON:0007005!3.55e-08!24;UBERON:0004139!3.55e-08!24;UBERON:0004291!3.55e-08!24;UBERON:0004872!3.97e-08!84;UBERON:0002097!1.47e-07!40;UBERON:0000468!1.88e-07!659;UBERON:0001135!2.73e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;8.96e-11;31!UBERON:0001015;8.96e-11;31!UBERON:0000383;8.96e-11;31!UBERON:0001013;9.58e-11;14!UBERON:0002384;1.84e-09;198!UBERON:0002199;3.60e-08;46!UBERON:0002416;3.60e-08;46!UBERON:0002204;4.25e-08;70!UBERON:0000948;1.03e-07;22!UBERON:0003102;1.52e-07;50!UBERON:0001135;3.65e-07;15!UBERON:0002097;5.59e-07;41!UBERON:0004905;6.99e-07;8!UBERON:0000982;6.99e-07;8!UBERON:0004770;6.99e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,9.18e-22,71;UBERON:0003059,9.18e-22,71;UBERON:0007282,9.18e-22,71;UBERON:0004290,9.18e-22,71;UBERON:0009618,9.18e-22,71;UBERON:0007524,9.91e-22,73;UBERON:0003077,3.47e-21,72;UBERON:0007285,3.47e-21,72;UBERON:0007503,5.49e-19,78;UBERON:0002385,6.33e-19,64;UBERON:0001015,6.33e-19,64;UBERON:0000383,6.33e-19,64;UBERON:0001134,8.10e-19,62;UBERON:0002036,8.10e-19,62;UBERON:0003082,8.10e-19,62;UBERON:0000486,4.37e-18,83;UBERON:0003104,3.29e-15,160;UBERON:0009142,3.29e-15,160;UBERON:0005256,5.85e-15,122;UBERON:0002199,7.27e-12,46;UBERON:0002416,7.27e-12,46;UBERON:0003102,1.69e-11,99;UBERON:0001013,6.34e-11,14;UBERON:0002384,3.67e-10,371;UBERON:0000926,5.97e-10,315;UBERON:0004120,5.97e-10,315;UBERON:0006603,5.97e-10,315;UBERON:0002097,5.53e-09,41;UBERON:0002100,2.90e-08,199;UBERON:0004872,7.93e-08,83;UBERON:0000948,8.13e-08,24;UBERON:0005498,8.13e-08,24;UBERON:0004140,8.13e-08,24;UBERON:0009881,8.13e-08,24;UBERON:0004141,8.13e-08,24;UBERON:0003084,8.13e-08,24;UBERON:0007005,8.13e-08,24;UBERON:0004139,8.13e-08,24;UBERON:0004291,8.13e-08,24;UBERON:0000479,2.16e-07,773;UBERON:0000490,2.31e-07,148;UBERON:0002204,3.83e-07,167;UBERON:0001135,4.25e-07,15;UBERON:0004905,7.22e-07,8;UBERON:0000982,7.22e-07,8;UBERON:0004770,7.22e-07,8 | |||
|phase1_expression=4.54195948176392,1.92690471501885,7.61153782118244,3.00219895059391,2.68176656656373,4.36169262050184,10.1319951267324,8.2123583545488,12.0145388971926,0,0,0,0.791300934685361,7.54974753056284,13.9186897805725,4.70627602516243,3.01347264011988,4.38186054232424,4.39139518911456,1.23121058076788,2.24400760368678,2.19418305034661,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,7.31420598941885,1.34140171940727,1.79007586580942,3.61439152384566,6.01605492763067,7.9665585428453,0,8.27279279514481,0.283604451492204,0.221729397462564,0.43917392846563,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4666914686485,4.05217637326655,5.42877641334197,8.03142538096678,0.709336764396714,1.12135520028461,5.33744978648525,1.2333377420858,2.48968828319813,0.67355336034844,1.63461903113459,5.44886739521753,9.21881479167998,3.04617861383936,4.68240115245481,6.84566185853339,7.02408798593465,1.40921398372518,0.647491777472526,0.842704840213491,6.32877930890169,5.77321291365309,8.78269139994006,17.8200428592308,13.5996811103206,3.64064544775211,8.62341770179486,1.5150250255866,1.50142223846357,5.26421819419948,4.38977620880838,3.98434134538726,14.5730917139399,0.567160915800105,4.84352016359927,7.26095121983129,6.78182083710598,3.90118424909723,1.8549455262919,5.92573242104947,5.02515512095292,12.1518959213712,3.02054715999716,4.54380793639406,6.53554280360325,7.11242650002772,8.87523981291536,2.72030665214629,3.39121184620975,0.193260853163297,0,0,0.243947412259191,0.397589304964456,0.464775771478074,0.310983165046111,0.504641701751257,0,7.8224766164908,7.07565032012174,2.76269842704961,10.2160944167035,10.1063127433742,0,0,0,0,0,0,0,0,0,0,2.80483547606892,4.5273141246454,19.1111324801205,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,3.58389135841357,5.19967392639789,0,0.34779121492523,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0.063497894292169,0,0,1.71072446022705,0.616964956219941,0,0.285826432630578,1.12131084345361,1.30788020649984,1.10007428731425,1.42198887333556,42.9187735022259,6.762422020448,1.59562869950922,0,1.80045161983499,0,2.1313774321288,5.43316375900961,19.5343777940919,1.64648067356154,4.23457039581856,4.97548728239564,0.791951872933429,0,0,0.199945982364114,0,0,0,2.87549826589899,9.18895486672911,4.27910715122155,5.06734573336527,1.2328579353023,1.25342674267927,0,0,0,0.128343036279748,0,1.30139853857622,0,0.167516265334349,0,0,0,0,11.41030872988,13.0044335475516,10.8506009479894,6.03115498439341,0.535286966391485,0,3.39710103478868,8.72743689210385,9.09630016223939,2.0694614258501,2.65690239414175,3.50301420229236,5.73431855489347,4.30762546418029,7.20601190002797,0,0,0,0,0,0.907170879989041,4.71404834855676,4.45039722535381,4.77122160536225,7.81648810459776,4.60536524160033,2.57366273829772,4.45254199334973,2.31314540703983,4.26148140751505,3.94210348866284,3.11552657510173,3.7187321107187,0,0,0,2.52591785962135,3.64182336013434,5.90059867317409,0,0,0.784349769176855,0,0.105551628892876,0,0,0,3.08454505380579,0,0,0,0,0.223874754722178,0,0,0,0.656029291399411,0,0.412164046590889,0.640986253728404,0.165018999841176,1.14853107599234,0,0,5.60690166094307,3.69716681075147,3.07007349452259,1.10269257987624,4.51165028446749,4.0604674295984,2.47157219506693,4.00644160410318,0,0,0,0,0.929691098594572,26.1294247869431,4.8792608911242,2.7723022215848,5.32306030317022,3.47973196830029,4.26245703939016,0.572499546967965,1.116475108079,0.316379424718726,5.52827562379092,2.81487570442467,2.1396949401696,3.18203247925937,0,2.15846949099978,2.19629623788844,3.18093486333353,4.24583211303964,1.58510321173008,2.94880919367287,2.43816869544795,3.41198885483798,1.05650146756755,2.8664981395677,0.989838023675989,5.65040583101214,3.85955740482287,0.66343897524122,1.75380354101505,6.36653087693356,3.9353685122798,1.21746226177622,2.16876448669825,1.12678241012897,2.00775893085672,4.32295780457733,1.426684205925,1.77380532035299,8.02209014131124,12.8425008254362,2.27683904259429,5.24902080367474,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0.5745161103971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75809815126273,0,0,0,11.6984797521468,0.296964680832639,2.76444631889309,0,0,2.44879151050393,0,0,7.17292757703851,0.828851746593443,0,0.306806047506464,0,7.15391051622157,0,0,0,4.43895325366201,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0.438770794307945,0,0,3.77056266668606,0.341826167541004,0,0,0,0.957003479195758,1.28236630762607,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98104772431402,2.29989667708682,8.55442202907076,0,0,0,0.269604531922708,0,0,0,0,0,7.89168805698781,0,0.30607276163049,1.3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| ||
|short_description=p9@COL6A2 | |||
}} | }} |
Latest revision as of 22:44, 18 September 2015
Short description: | p9@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL6A2_5end |
Coexpression cluster: | C1421_Mesenchymal_Preadipocyte_Fibroblast_tenocyte_Adipocyte_Osteoblast_Nucleus |
Association with transcript: | -481bp_to_ENST00000300527_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | P12110 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.47e-30 | 76 |
multi fate stem cell | 5.77e-21 | 427 |
muscle precursor cell | 1.85e-20 | 58 |
myoblast | 1.85e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.85e-20 | 58 |
somatic stem cell | 6.59e-20 | 433 |
muscle cell | 2.09e-19 | 55 |
stem cell | 1.49e-18 | 441 |
electrically responsive cell | 6.15e-16 | 61 |
electrically active cell | 6.15e-16 | 61 |
smooth muscle cell | 9.05e-14 | 43 |
smooth muscle myoblast | 9.05e-14 | 43 |
connective tissue cell | 1.17e-10 | 361 |
vascular associated smooth muscle cell | 3.06e-10 | 32 |
skin fibroblast | 4.89e-10 | 23 |
stromal cell | 2.70e-08 | 28 |
preadipocyte | 2.89e-08 | 12 |
mesenchymal cell | 2.95e-08 | 354 |
mesenchymal stem cell of adipose | 8.31e-07 | 8 |