FFCP PHASE1:Hg19::chr21:47517478..47517529,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=P12110 | |UniProt=P12110 | ||
|association_with_transcript=-481bp_to_ENST00000300527_5end | |association_with_transcript=-481bp_to_ENST00000300527_5end | ||
|cluster_id=chr21:47517478..47517529,+ | |||
|coexpression_cluster_id=C1421 | |coexpression_cluster_id=C1421 | ||
|description=CAGE_peak_9_at_COL6A2_5end | |description=CAGE_peak_9_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.14e-48!180;CL:0000057!3.62e-28!75;CL:0000680!4.49e-19!57;CL:0000056!4.49e-19!57;CL:0000355!4.49e-19!57;CL:0000187!3.04e-18!54;CL:0000183!3.42e-17!59;CL:0000393!5.73e-16!60;CL:0000211!5.73e-16!60;CL:0000192!1.18e-13!42;CL:0000514!1.18e-13!42;CL:0000048!1.17e-11!430;CL:0002620!6.93e-11!23;CL:0000034!8.21e-11!444;CL:0000723!1.19e-10!436;CL:0000359!1.87e-10!32;CL:0002334!7.68e-07!12 | |ontology_enrichment_celltype=CL:0000055!2.14e-48!180;CL:0000057!3.62e-28!75;CL:0000680!4.49e-19!57;CL:0000056!4.49e-19!57;CL:0000355!4.49e-19!57;CL:0000187!3.04e-18!54;CL:0000183!3.42e-17!59;CL:0000393!5.73e-16!60;CL:0000211!5.73e-16!60;CL:0000192!1.18e-13!42;CL:0000514!1.18e-13!42;CL:0000048!1.17e-11!430;CL:0002620!6.93e-11!23;CL:0000034!8.21e-11!444;CL:0000723!1.19e-10!436;CL:0000359!1.87e-10!32;CL:0002334!7.68e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000057;2.47e-12;73!CL:0000187;5.77e-11;55!CL:0000192;6.21e-10;43!CL:0002620;6.75e-10;23!CL:0000359;7.22e-10;32!CL:0000723;1.35e-09;61!CL:0000393;3.38e-09;61!CL:0000211;3.38e-09;61!CL:0000134;3.50e-09;55!CL:0002320;8.22e-09;188!CL:0000499;2.32e-08;28!CL:0000048;2.83e-08;58!CL:0002334;4.05e-08;12!CL:0002494;9.81e-07;16 | |ontology_enrichment_celltype_v019=CL:0000057;2.47e-12;73!CL:0000187;5.77e-11;55!CL:0000192;6.21e-10;43!CL:0002620;6.75e-10;23!CL:0000359;7.22e-10;32!CL:0000723;1.35e-09;61!CL:0000393;3.38e-09;61!CL:0000211;3.38e-09;61!CL:0000134;3.50e-09;55!CL:0002320;8.22e-09;188!CL:0000499;2.32e-08;28!CL:0000048;2.83e-08;58!CL:0002334;4.05e-08;12!CL:0002494;9.81e-07;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.47e-30,76;CL:0000048,5.77e-21,427;CL:0000680,1.85e-20,58;CL:0000056,1.85e-20,58;CL:0000355,1.85e-20,58;CL:0000723,6.59e-20,433;CL:0000187,2.09e-19,55;CL:0000034,1.49e-18,441;CL:0000393,6.15e-16,61;CL:0000211,6.15e-16,61;CL:0000192,9.05e-14,43;CL:0000514,9.05e-14,43;CL:0002320,1.17e-10,361;CL:0000359,3.06e-10,32;CL:0002620,4.89e-10,23;CL:0000499,2.70e-08,28;CL:0002334,2.89e-08,12;CL:0000134,2.95e-08,354;CL:0002570,8.31e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;6.40e-12;58!CL:0000514;6.21e-10;43 | |ontology_enrichment_development_v019=CL:0000355;6.40e-12;58!CL:0000514;6.21e-10;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!7.95e-24!83;UBERON:0002329!7.95e-24!83;UBERON:0003077!7.95e-24!83;UBERON:0003059!7.95e-24!83;UBERON:0007282!7.95e-24!83;UBERON:0009618!7.95e-24!83;UBERON:0007285!7.95e-24!83;UBERON:0004290!3.39e-22!70;UBERON:0002385!3.34e-19!63;UBERON:0001015!3.34e-19!63;UBERON:0000383!3.34e-19!63;UBERON:0000486!1.01e-18!82;UBERON:0001134!1.43e-18!61;UBERON:0002036!1.43e-18!61;UBERON:0003082!1.43e-18!61;UBERON:0005256!1.50e-15!143;UBERON:0003102!8.09e-12!95;UBERON:0002100!1.13e-11!216;UBERON:0000475!2.24e-11!365;UBERON:0002199!7.26e-10!45;UBERON:0002416!7.26e-10!45;UBERON:0001013!6.07e-09!14;UBERON:0000481!1.99e-08!347;UBERON:0003104!2.07e-08!238;UBERON:0009142!2.07e-08!238;UBERON:0007100!3.39e-08!27;UBERON:0000948!3.55e-08!24;UBERON:0005498!3.55e-08!24;UBERON:0004140!3.55e-08!24;UBERON:0009881!3.55e-08!24;UBERON:0004141!3.55e-08!24;UBERON:0003084!3.55e-08!24;UBERON:0007005!3.55e-08!24;UBERON:0004139!3.55e-08!24;UBERON:0004291!3.55e-08!24;UBERON:0004872!3.97e-08!84;UBERON:0002097!1.47e-07!40;UBERON:0000468!1.88e-07!659;UBERON:0001135!2.73e-07!15 | |ontology_enrichment_uberon=UBERON:0000914!7.95e-24!83;UBERON:0002329!7.95e-24!83;UBERON:0003077!7.95e-24!83;UBERON:0003059!7.95e-24!83;UBERON:0007282!7.95e-24!83;UBERON:0009618!7.95e-24!83;UBERON:0007285!7.95e-24!83;UBERON:0004290!3.39e-22!70;UBERON:0002385!3.34e-19!63;UBERON:0001015!3.34e-19!63;UBERON:0000383!3.34e-19!63;UBERON:0000486!1.01e-18!82;UBERON:0001134!1.43e-18!61;UBERON:0002036!1.43e-18!61;UBERON:0003082!1.43e-18!61;UBERON:0005256!1.50e-15!143;UBERON:0003102!8.09e-12!95;UBERON:0002100!1.13e-11!216;UBERON:0000475!2.24e-11!365;UBERON:0002199!7.26e-10!45;UBERON:0002416!7.26e-10!45;UBERON:0001013!6.07e-09!14;UBERON:0000481!1.99e-08!347;UBERON:0003104!2.07e-08!238;UBERON:0009142!2.07e-08!238;UBERON:0007100!3.39e-08!27;UBERON:0000948!3.55e-08!24;UBERON:0005498!3.55e-08!24;UBERON:0004140!3.55e-08!24;UBERON:0009881!3.55e-08!24;UBERON:0004141!3.55e-08!24;UBERON:0003084!3.55e-08!24;UBERON:0007005!3.55e-08!24;UBERON:0004139!3.55e-08!24;UBERON:0004291!3.55e-08!24;UBERON:0004872!3.97e-08!84;UBERON:0002097!1.47e-07!40;UBERON:0000468!1.88e-07!659;UBERON:0001135!2.73e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;8.96e-11;31!UBERON:0001015;8.96e-11;31!UBERON:0000383;8.96e-11;31!UBERON:0001013;9.58e-11;14!UBERON:0002384;1.84e-09;198!UBERON:0002199;3.60e-08;46!UBERON:0002416;3.60e-08;46!UBERON:0002204;4.25e-08;70!UBERON:0000948;1.03e-07;22!UBERON:0003102;1.52e-07;50!UBERON:0001135;3.65e-07;15!UBERON:0002097;5.59e-07;41!UBERON:0004905;6.99e-07;8!UBERON:0000982;6.99e-07;8!UBERON:0004770;6.99e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0002385;8.96e-11;31!UBERON:0001015;8.96e-11;31!UBERON:0000383;8.96e-11;31!UBERON:0001013;9.58e-11;14!UBERON:0002384;1.84e-09;198!UBERON:0002199;3.60e-08;46!UBERON:0002416;3.60e-08;46!UBERON:0002204;4.25e-08;70!UBERON:0000948;1.03e-07;22!UBERON:0003102;1.52e-07;50!UBERON:0001135;3.65e-07;15!UBERON:0002097;5.59e-07;41!UBERON:0004905;6.99e-07;8!UBERON:0000982;6.99e-07;8!UBERON:0004770;6.99e-07;8 | ||
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| ||
|short_description=p9@COL6A2 | |short_description=p9@COL6A2 | ||
}} | }} |
Latest revision as of 22:44, 18 September 2015
Short description: | p9@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL6A2_5end |
Coexpression cluster: | C1421_Mesenchymal_Preadipocyte_Fibroblast_tenocyte_Adipocyte_Osteoblast_Nucleus |
Association with transcript: | -481bp_to_ENST00000300527_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | P12110 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.47e-30 | 76 |
multi fate stem cell | 5.77e-21 | 427 |
muscle precursor cell | 1.85e-20 | 58 |
myoblast | 1.85e-20 | 58 |
multi-potent skeletal muscle stem cell | 1.85e-20 | 58 |
somatic stem cell | 6.59e-20 | 433 |
muscle cell | 2.09e-19 | 55 |
stem cell | 1.49e-18 | 441 |
electrically responsive cell | 6.15e-16 | 61 |
electrically active cell | 6.15e-16 | 61 |
smooth muscle cell | 9.05e-14 | 43 |
smooth muscle myoblast | 9.05e-14 | 43 |
connective tissue cell | 1.17e-10 | 361 |
vascular associated smooth muscle cell | 3.06e-10 | 32 |
skin fibroblast | 4.89e-10 | 23 |
stromal cell | 2.70e-08 | 28 |
preadipocyte | 2.89e-08 | 12 |
mesenchymal cell | 2.95e-08 | 354 |
mesenchymal stem cell of adipose | 8.31e-07 | 8 |