FFCP PHASE1:Hg19::chr14:106668105..106668116,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5585 | |HGNC=5585 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000390606_5end | |association_with_transcript=-10bp_to_ENST00000390606_5end | ||
|cluster_id=chr14:106668105..106668116,- | |||
|coexpression_cluster_id=C218 | |||
|description=CAGE_peak_1_at_IGHV3-20_5end | |description=CAGE_peak_1_at_IGHV3-20_5end | ||
|id=chr14:106668105..106668116,- | |id=chr14:106668105..106668116,- | ||
|ontology_enrichment_celltype=CL:0000945!4.20e-09!24;CL:0000826!4.20e-09!24;CL:0000842!3.32e-07!3 | |ontology_enrichment_celltype=CL:0000945!4.20e-09!24;CL:0000826!4.20e-09!24;CL:0000842!3.32e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000236;3.40e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.61e-08,14 | |||
|ontology_enrichment_development_v019=UBERON:0006298;3.98e-14;1!UBERON:0001045;1.18e-13;1!UBERON:0008801;1.18e-13;1!UBERON:0006242;1.18e-13;1!UBERON:0004872;3.15e-08;7!UBERON:0006965;1.20e-07;2!UBERON:0006595;3.05e-07;86 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.26e-25!115;UBERON:0001829!3.17e-11!2 | |ontology_enrichment_uberon=UBERON:0007023!9.26e-25!115;UBERON:0001829!3.17e-11!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0001829;5.59e-26;2!UBERON:0002372;3.28e-14;1!UBERON:0001961;3.28e-14;1!UBERON:0001744;3.28e-14;1!UBERON:0001042;3.28e-14;1!UBERON:0001735;3.28e-14;1!UBERON:0001736;3.98e-14;1!UBERON:0000029;1.18e-13;1!UBERON:0001154;1.18e-13;1!UBERON:0001831;1.18e-13;1!UBERON:0001153;1.18e-13;1!UBERON:0009854;1.18e-13;1!UBERON:0001567;1.18e-13;1!UBERON:0004921;2.78e-11;33!UBERON:0001044;2.61e-09;6!UBERON:0003293;2.61e-09;6!UBERON:0003294;2.61e-09;6!UBERON:0010047;2.61e-09;6!UBERON:0003408;2.61e-09;6!UBERON:0000167;2.61e-09;6!UBERON:0006562;9.55e-08;2!UBERON:0003127;1.81e-07;2!UBERON:0004089;1.81e-07;2!UBERON:0001007;6.08e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,8.70e-26,2;UBERON:0007023,6.83e-17,114;UBERON:0002372,3.08e-14,1;UBERON:0001961,3.08e-14,1;UBERON:0001744,3.08e-14,1;UBERON:0001735,3.08e-14,1;UBERON:0001736,3.98e-14,1;UBERON:0006298,3.98e-14,1;UBERON:0000029,6.65e-14,1;UBERON:0001154,7.55e-14,1;UBERON:0001153,7.55e-14,1;UBERON:0001045,7.55e-14,1;UBERON:0001831,1.83e-13,1;UBERON:0001567,1.83e-13,1;UBERON:0008801,1.83e-13,1;UBERON:0001044,3.02e-09,6;UBERON:0003293,3.02e-09,6;UBERON:0003294,3.02e-09,6;UBERON:0010047,3.02e-09,6;UBERON:0000167,3.02e-09,6;UBERON:0005409,5.78e-08,25;UBERON:0003127,1.87e-07,2;UBERON:0004089,2.25e-07,2;UBERON:0000160,8.67e-07,17 | |||
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|short_description=p1@IGHV3-20 | |short_description=p1@IGHV3-20 | ||
}} | }} |
Latest revision as of 22:12, 18 September 2015
Short description: | p1@IGHV3-20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGHV3-20_5end |
Coexpression cluster: | C218_tonsil_lymph_CD19_spleen_colon_appendix_salivary |
Association with transcript: | -10bp_to_ENST00000390606_5end |
EntrezGene: | NA |
HGNC: | 5585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.61e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 8.70e-26 | 2 |
adult organism | 6.83e-17 | 114 |
tonsil | 3.08e-14 | 1 |
mucosa-associated lymphoid tissue | 3.08e-14 | 1 |
lymphoid tissue | 3.08e-14 | 1 |
tonsillar ring | 3.08e-14 | 1 |
submandibular gland | 3.98e-14 | 1 |
submandibular gland primordium | 3.98e-14 | 1 |
lymph node | 6.65e-14 | 1 |
vermiform appendix | 7.55e-14 | 1 |
caecum | 7.55e-14 | 1 |
midgut | 7.55e-14 | 1 |
parotid gland | 1.83e-13 | 1 |
cheek | 1.83e-13 | 1 |
parotid gland primordium | 1.83e-13 | 1 |
saliva-secreting gland | 3.02e-09 | 6 |
gland of oral region | 3.02e-09 | 6 |
gland of foregut | 3.02e-09 | 6 |
oral gland | 3.02e-09 | 6 |
oral cavity | 3.02e-09 | 6 |
gastrointestinal system | 5.78e-08 | 25 |
open tracheal system trachea | 1.87e-07 | 2 |
midface | 2.25e-07 | 2 |
intestine | 8.67e-07 | 17 |