FFCP PHASE1:Hg19::chrX:105969873..105969884,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79589 | |EntrezGene=79589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21153 | |HGNC=21153 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TEB7 | |UniProt=Q8TEB7 | ||
|association_with_transcript=-9bp_to_ENST00000255499,NM_194463,uc004eml.2_5end | |association_with_transcript=-9bp_to_ENST00000255499,NM_194463,uc004eml.2_5end | ||
|cluster_id=chrX:105969873..105969884,+ | |||
|coexpression_cluster_id=C4841 | |coexpression_cluster_id=C4841 | ||
|description=CAGE_peak_5_at_RNF128_5end | |description=CAGE_peak_5_at_RNF128_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000223!3.02e-13!59;CL:0002076!3.03e-08!43 | |ontology_enrichment_celltype=CL:0000223!3.02e-13!59;CL:0002076!3.03e-08!43 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.10e-16;12 | |ontology_enrichment_celltype_v019=CL:0000182;2.10e-16;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.85e-16,12;CL:0000223,8.09e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.42e-18;11!UBERON:0009497;3.24e-15;13!UBERON:0003104;6.11e-08;31!UBERON:0008801;7.77e-07;1!UBERON:0006242;7.77e-07;1 | |ontology_enrichment_development_v019=UBERON:0004161;4.42e-18;11!UBERON:0009497;3.24e-15;13!UBERON:0003104;6.11e-08;31!UBERON:0008801;7.77e-07;1!UBERON:0006242;7.77e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;7.77e-07;1!DOID:10165;7.77e-07;1!DOID:1798;7.77e-07;1 | |ontology_enrichment_disease_v019=DOID:1799;7.77e-07;1!DOID:10165;7.77e-07;1!DOID:1798;7.77e-07;1 | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.17e-09!169;UBERON:0000925!1.17e-09!169;UBERON:0006595!1.17e-09!169;UBERON:0000481!2.37e-09!347;UBERON:0007023!3.32e-09!115;UBERON:0000475!5.34e-08!365;UBERON:0003929!5.90e-08!54;UBERON:0002780!6.85e-08!41;UBERON:0001890!6.85e-08!41;UBERON:0006240!6.85e-08!41;UBERON:0002020!7.48e-08!34;UBERON:0003528!7.48e-08!34;UBERON:0001049!8.23e-08!57;UBERON:0005068!8.23e-08!57;UBERON:0006241!8.23e-08!57;UBERON:0007135!8.23e-08!57;UBERON:0001893!8.28e-08!34;UBERON:0005911!9.64e-08!82;UBERON:0003080!1.45e-07!42;UBERON:0001007!1.78e-07!155;UBERON:0001555!1.78e-07!155;UBERON:0007026!1.78e-07!155;UBERON:0009497!2.33e-07!25;UBERON:0000015!2.33e-07!25;UBERON:0002423!2.33e-07!25;UBERON:0006235!2.33e-07!25;UBERON:0004161!2.33e-07!25;UBERON:0002791!3.33e-07!33;UBERON:0002616!3.40e-07!59;UBERON:0001869!5.45e-07!32;UBERON:0001017!5.59e-07!82;UBERON:0000955!6.46e-07!69;UBERON:0006238!6.46e-07!69;UBERON:0000073!7.62e-07!94;UBERON:0001016!7.62e-07!94;UBERON:0005743!7.98e-07!86 | |ontology_enrichment_uberon=UBERON:0004119!1.17e-09!169;UBERON:0000925!1.17e-09!169;UBERON:0006595!1.17e-09!169;UBERON:0000481!2.37e-09!347;UBERON:0007023!3.32e-09!115;UBERON:0000475!5.34e-08!365;UBERON:0003929!5.90e-08!54;UBERON:0002780!6.85e-08!41;UBERON:0001890!6.85e-08!41;UBERON:0006240!6.85e-08!41;UBERON:0002020!7.48e-08!34;UBERON:0003528!7.48e-08!34;UBERON:0001049!8.23e-08!57;UBERON:0005068!8.23e-08!57;UBERON:0006241!8.23e-08!57;UBERON:0007135!8.23e-08!57;UBERON:0001893!8.28e-08!34;UBERON:0005911!9.64e-08!82;UBERON:0003080!1.45e-07!42;UBERON:0001007!1.78e-07!155;UBERON:0001555!1.78e-07!155;UBERON:0007026!1.78e-07!155;UBERON:0009497!2.33e-07!25;UBERON:0000015!2.33e-07!25;UBERON:0002423!2.33e-07!25;UBERON:0006235!2.33e-07!25;UBERON:0004161!2.33e-07!25;UBERON:0002791!3.33e-07!33;UBERON:0002616!3.40e-07!59;UBERON:0001869!5.45e-07!32;UBERON:0001017!5.59e-07!82;UBERON:0000955!6.46e-07!69;UBERON:0006238!6.46e-07!69;UBERON:0000073!7.62e-07!94;UBERON:0001016!7.62e-07!94;UBERON:0005743!7.98e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;4.14e-18;19!UBERON:0006925;4.14e-18;19!UBERON:0002423;5.83e-17;25!UBERON:0002365;8.42e-16;31!UBERON:0002330;8.42e-16;31!UBERON:0002368;3.62e-11;33!UBERON:0002108;1.68e-10;4!UBERON:0000949;2.48e-09;43!UBERON:0001007;7.34e-07;81!UBERON:0001874;7.77e-07;1!UBERON:0001831;7.77e-07;1!UBERON:0001567;7.77e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0002107;4.14e-18;19!UBERON:0006925;4.14e-18;19!UBERON:0002423;5.83e-17;25!UBERON:0002365;8.42e-16;31!UBERON:0002330;8.42e-16;31!UBERON:0002368;3.62e-11;33!UBERON:0002108;1.68e-10;4!UBERON:0000949;2.48e-09;43!UBERON:0001007;7.34e-07;81!UBERON:0001874;7.77e-07;1!UBERON:0001831;7.77e-07;1!UBERON:0001567;7.77e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.76e-18,19;UBERON:0006925,3.76e-18,19;UBERON:0008836,3.76e-18,19;UBERON:0009497,5.65e-17,25;UBERON:0000015,5.65e-17,25;UBERON:0002423,5.65e-17,25;UBERON:0006235,5.65e-17,25;UBERON:0004161,5.65e-17,25;UBERON:0002365,1.45e-16,31;UBERON:0002330,1.45e-16,31;UBERON:0008835,1.65e-15,22;UBERON:0003894,1.65e-15,22;UBERON:0009854,8.79e-15,23;UBERON:0007499,1.68e-13,25;UBERON:0009856,6.18e-13,26;UBERON:0002368,8.21e-12,35;UBERON:0000949,7.41e-11,45;UBERON:0003929,1.24e-10,54;UBERON:0002108,1.28e-10,4;UBERON:0002530,1.29e-09,59;UBERON:0005172,1.02e-08,54;UBERON:0005173,1.02e-08,54;UBERON:0001007,1.25e-08,145;UBERON:0001555,1.25e-08,145;UBERON:0007026,1.25e-08,145;UBERON:0004119,1.49e-08,160;UBERON:0000925,1.49e-08,160;UBERON:0006595,1.49e-08,160;UBERON:0002417,1.14e-07,60;UBERON:0000916,1.14e-07,60;UBERON:0005911,1.27e-07,82;UBERON:0004921,1.82e-07,118;UBERON:0001831,5.37e-07,1;UBERON:0001567,5.37e-07,1;UBERON:0008801,5.37e-07,1;UBERON:0001874,6.38e-07,1 | |||
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| ||
|short_description=p5@RNF128 | |short_description=p5@RNF128 | ||
}} | }} |
Latest revision as of 22:11, 18 September 2015
Short description: | p5@RNF128 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RNF128_5end |
Coexpression cluster: | C4841_Mesothelial_gastrointestinal_Hepatocyte_oral_small_signet_liver |
Association with transcript: | -9bp_to_ENST00000255499, NM_194463, uc004eml.2_5end |
EntrezGene: | RNF128 |
HGNC: | 21153 |
UniProt: | Q8TEB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.85e-16 | 12 |
endodermal cell | 8.09e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 3.76e-18 | 19 |
digestive gland | 3.76e-18 | 19 |
liver bud | 3.76e-18 | 19 |
epithelium of foregut-midgut junction | 5.65e-17 | 25 |
anatomical boundary | 5.65e-17 | 25 |
hepatobiliary system | 5.65e-17 | 25 |
foregut-midgut junction | 5.65e-17 | 25 |
septum transversum | 5.65e-17 | 25 |
exocrine gland | 1.45e-16 | 31 |
exocrine system | 1.45e-16 | 31 |
hepatic diverticulum | 1.65e-15 | 22 |
liver primordium | 1.65e-15 | 22 |
digestive tract diverticulum | 8.79e-15 | 23 |
epithelial sac | 1.68e-13 | 25 |
sac | 6.18e-13 | 26 |
endocrine gland | 8.21e-12 | 35 |
endocrine system | 7.41e-11 | 45 |
gut epithelium | 1.24e-10 | 54 |
small intestine | 1.28e-10 | 4 |
gland | 1.29e-09 | 59 |
abdomen element | 1.02e-08 | 54 |
abdominal segment element | 1.02e-08 | 54 |
digestive system | 1.25e-08 | 145 |
digestive tract | 1.25e-08 | 145 |
primitive gut | 1.25e-08 | 145 |
endoderm-derived structure | 1.49e-08 | 160 |
endoderm | 1.49e-08 | 160 |
presumptive endoderm | 1.49e-08 | 160 |
abdominal segment of trunk | 1.14e-07 | 60 |
abdomen | 1.14e-07 | 60 |
endo-epithelium | 1.27e-07 | 82 |
subdivision of digestive tract | 1.82e-07 | 118 |
parotid gland | 5.37e-07 | 1 |
cheek | 5.37e-07 | 1 |
parotid gland primordium | 5.37e-07 | 1 |
putamen | 6.38e-07 | 1 |