FFCP PHASE1:Hg19::chr21:47406517..47406541,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-481bp_to_ENST00000492851_5end | |association_with_transcript=-481bp_to_ENST00000492851_5end | ||
|cluster_id=chr21:47406517..47406541,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_6_at_COL6A1_5end | |description=CAGE_peak_6_at_COL6A1_5end | ||
|id=chr21:47406517..47406541,+ | |id=chr21:47406517..47406541,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.93e-40!180;CL:0000057!5.05e-21!75;CL:0000680!1.11e-19!57;CL:0000056!1.11e-19!57;CL:0000355!1.11e-19!57;CL:0000187!5.12e-19!54;CL:0000183!8.15e-19!59;CL:0000393!2.68e-17!60;CL:0000211!2.68e-17!60;CL:0000192!3.87e-16!42;CL:0000514!3.87e-16!42;CL:0000359!1.42e-12!32;CL:0002620!3.63e-09!23;CL:0000048!1.20e-08!430;CL:0000723!3.18e-08!436;CL:0000034!3.27e-08!444;CL:0000499!7.90e-07!27 | |ontology_enrichment_celltype=CL:0000055!5.93e-40!180;CL:0000057!5.05e-21!75;CL:0000680!1.11e-19!57;CL:0000056!1.11e-19!57;CL:0000355!1.11e-19!57;CL:0000187!5.12e-19!54;CL:0000183!8.15e-19!59;CL:0000393!2.68e-17!60;CL:0000211!2.68e-17!60;CL:0000192!3.87e-16!42;CL:0000514!3.87e-16!42;CL:0000359!1.42e-12!32;CL:0002620!3.63e-09!23;CL:0000048!1.20e-08!430;CL:0000723!3.18e-08!436;CL:0000034!3.27e-08!444;CL:0000499!7.90e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000192;1.67e-11;43!CL:0002620;2.16e-11;23!CL:0000187;1.12e-10;55!CL:0000359;1.79e-10;32!CL:0000393;9.01e-10;61!CL:0000211;9.01e-10;61!CL:0000723;3.05e-09;61!CL:0000057;3.44e-09;73!CL:0000134;5.51e-09;55!CL:0002320;1.06e-08;188!CL:0000048;1.79e-08;58!CL:0002570;9.79e-08;8!CL:0000034;6.30e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.11e-25,76;CL:0000048,1.72e-20,427;CL:0000723,1.39e-19,433;CL:0000680,1.39e-19,58;CL:0000056,1.39e-19,58;CL:0000355,1.39e-19,58;CL:0000187,4.03e-19,55;CL:0000034,2.02e-18,441;CL:0000393,6.14e-16,61;CL:0000211,6.14e-16,61;CL:0000192,7.46e-15,43;CL:0000514,7.46e-15,43;CL:0002620,1.36e-11,23;CL:0000359,5.41e-11,32;CL:0002320,1.22e-10,361;CL:0000134,2.78e-08,354;CL:0002570,8.95e-08,8;CL:0002559,8.58e-07,5;CL:0000219,9.10e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;1.67e-11;43!CL:0000355;5.16e-10;58 | |||
|ontology_enrichment_disease=DOID:2394!3.37e-08!14 | |ontology_enrichment_disease=DOID:2394!3.37e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.77e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.54e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.15e-24!83;UBERON:0002329!3.15e-24!83;UBERON:0003077!3.15e-24!83;UBERON:0003059!3.15e-24!83;UBERON:0007282!3.15e-24!83;UBERON:0009618!3.15e-24!83;UBERON:0007285!3.15e-24!83;UBERON:0004290!2.55e-23!70;UBERON:0000486!5.29e-20!82;UBERON:0001134!1.51e-19!61;UBERON:0002036!1.51e-19!61;UBERON:0003082!1.51e-19!61;UBERON:0002385!3.05e-19!63;UBERON:0001015!3.05e-19!63;UBERON:0000383!3.05e-19!63;UBERON:0005256!5.55e-17!143;UBERON:0000475!9.66e-13!365;UBERON:0003102!6.17e-12!95;UBERON:0002100!8.55e-12!216;UBERON:0002199!3.19e-11!45;UBERON:0002416!3.19e-11!45;UBERON:0001013!2.10e-09!14;UBERON:0004573!1.06e-08!33;UBERON:0004571!1.06e-08!33;UBERON:0002097!1.45e-08!40;UBERON:0000481!1.67e-08!347;UBERON:0000490!6.80e-08!138;UBERON:0003104!8.06e-08!238;UBERON:0009142!8.06e-08!238;UBERON:0001637!1.08e-07!42;UBERON:0003509!1.08e-07!42;UBERON:0004572!1.08e-07!42;UBERON:0000468!1.98e-07!659;UBERON:0004872!3.89e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.54e-10;14!UBERON:0002199;3.04e-10;46!UBERON:0002416;3.04e-10;46!UBERON:0002385;5.53e-10;31!UBERON:0001015;5.53e-10;31!UBERON:0000383;5.53e-10;31!UBERON:0002097;6.49e-09;41!UBERON:0003102;1.34e-08;50!UBERON:0002384;1.91e-08;198!UBERON:0004573;4.94e-07;33!UBERON:0004571;4.94e-07;33!UBERON:0002067;5.72e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,5.82e-24,71;UBERON:0003059,5.82e-24,71;UBERON:0007282,5.82e-24,71;UBERON:0004290,5.82e-24,71;UBERON:0009618,5.82e-24,71;UBERON:0007524,7.06e-24,73;UBERON:0003077,2.19e-23,72;UBERON:0007285,2.19e-23,72;UBERON:0007503,2.91e-20,78;UBERON:0000486,4.86e-19,83;UBERON:0002385,1.43e-18,64;UBERON:0001015,1.43e-18,64;UBERON:0000383,1.43e-18,64;UBERON:0001134,1.51e-18,62;UBERON:0002036,1.51e-18,62;UBERON:0003082,1.51e-18,62;UBERON:0005256,2.20e-17,122;UBERON:0002199,1.21e-15,46;UBERON:0002416,1.21e-15,46;UBERON:0003104,8.83e-15,160;UBERON:0009142,8.83e-15,160;UBERON:0003102,2.10e-14,99;UBERON:0002097,9.63e-12,41;UBERON:0001013,1.39e-10,14;UBERON:0000490,2.92e-10,148;UBERON:0002384,2.97e-10,371;UBERON:0000926,2.03e-08,315;UBERON:0004120,2.03e-08,315;UBERON:0006603,2.03e-08,315;UBERON:0002100,5.42e-08,199;UBERON:0001637,1.42e-07,42;UBERON:0003509,1.42e-07,42;UBERON:0004572,1.42e-07,42;UBERON:0004573,2.24e-07,33;UBERON:0004571,2.24e-07,33;UBERON:0002067,3.07e-07,9;UBERON:0004016,3.07e-07,9;UBERON:0010083,3.07e-07,9;UBERON:0002073,8.58e-07,5;UBERON:0005086,8.58e-07,5 | |||
|phase1_expression=1.2717486548939,4.92431204949261,0.986680828671798,2.00146596706261,5.36353313312745,3.48935409640147,2.53299878168311,3.15859936713415,7.05201196139564,0.245733936501509,0,0,0.263766978228454,1.23766352960047,5.30235801164665,6.05092631806598,1.80808358407193,3.65155045193687,3.41552959153355,0.61560529038394,1.42800483870977,1.56727360739044,0.572471974262113,0.273748850145768,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,3.61439152384566,5.0133791063589,3.0417768981773,0.795285947051099,3.89307896242109,0,0.221729397462564,0.263504357079378,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0.81014194788176,0,0,0.112611480483322,0,0,0,0,0,0,1.49091585508596,0.759783069987479,1.05927344650575,4.58938593198102,1.41867352879343,1.68203280042692,0,2.71334303258876,1.55605517699883,1.21239604862719,1.47115712802113,1.81628913173918,4.03323147135999,0.468642863667593,4.05808099879417,0,5.52960118041664,1.52664848236894,1.94247533241758,2.52811452064047,1.83738754129404,2.82518929817066,4.23635702820638,2.37600571456411,7.66527480763526,0,15.8095991199572,0.168336113954066,1.12606667884768,0.831192346452549,0.877955241761676,4.29082914118628,3.00476117813194,0,2.69084453533293,2.34913127700424,4.4505699243508,7.80236849819446,3.40073346486848,3.60696756063881,1.30281799432113,2.36286865137773,1.07180705677318,1.26216887122057,1.93304787148829,6.7891343863901,3.90510551768276,1.61203357164224,0.339121184620975,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.207322110030741,0.504641701751257,0,7.8224766164908,23.7999147131368,2.76269842704961,4.64367928031979,7.21879481669586,0,0,0,0,0,0,0,0,0,0,0,2.4694440679884,10.2906097969879,0,0,1.18157981336281,0,0.245976877086227,0.171567810298526,0.109750285408626,0,0,0,0.977424915930974,7.27954349695705,0,0,0.234817388471643,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0.621984346622316,0,0.25248486685276,0,0,0,1.71072446022705,0.616964956219941,0,0,0.897048674762886,0.43596006883328,0.66004457238855,0.775630294546667,17.8828222925941,7.607724773004,1.32969058292435,0,0.514414748524284,0,1.3321108950805,4.14636181608628,3.7983512377401,0,0.65147236858747,1.42156779497018,0,0,0,0.099972991182057,0,0,0,0.718874566474748,1.14861935834114,0,2.17171960001369,1.2328579353023,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,3.31267027641678,5.00170521059677,4.06897535549603,1.66376689224646,0.535286966391485,0.473107245101804,0.35142424497814,2.10662269809403,6.82222512167955,2.0694614258501,0,2.58116835958384,2.5196248195744,3.52442083432933,4.46086450954113,0,0,0,0,0,0.604780586659361,0.248107807818777,0.61384789315225,3.64858122762996,1.40953064181271,0,1.12597744800525,1.48418066444991,7.09364591492216,7.28003073783821,1.8067974323038,4.15403543346897,5.46188778761808,0,0,0,1.95184561879831,6.00900854422166,5.76947425821466,0,0,0,0,0,0,0,0.431831832204279,0,0,0.501689773854853,0,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,0.103041011647722,0.0915694648183434,0.165018999841176,0.574265537996172,1.30012049207304,3.21367859688319,2.22342652071881,2.92692372517824,3.07007349452259,1.92971201478343,2.47066563197029,3.62541734785571,2.55679882248303,2.49289699810865,0.165284915360978,0,0,0,0.464845549297286,5.98143458978216,2.0911118104818,0.924100740528266,0.532306030317022,1.73986598415015,5.37440235401368,0.572499546967965,0.372158369359667,2.21465597303108,1.33441135746677,1.02359116524534,2.1396949401696,1.59101623962968,4.70969184119538,1.07923474549989,3.84351841630477,2.5918728516051,0.808729926293264,1.58510321173008,1.26377536871694,0.975267478179181,1.21856744815642,8.45201174054043,1.22849920267187,5.65621727814851,4.52032466480971,2.75682671773062,3.3171948762061,3.94605796728386,0.578775534266688,1.31178950409327,0,1.54911749049875,1.69017361519345,0.573645408816206,0.589494246078727,2.1400263088875,2.12856638442359,2.32218398827431,0.987884678879706,0.379473173765715,1.39973888097993,0,0,0,0.470719003883896,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0.111443384277478,0.284136146806413,0.47748896947538,0,0.307160702099232,0,0.140669416410513,0.111308705022906,0,0.211125408127993,0.796991953004279,0.276283915531148,0,0.102268682502155,0,2.79935628895627,0.0898683511473268,0,0,1.08507746200627,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0.347249989866585,0,0,0,0.331737779793674,0,0,0,0,1.07730361905316,0.113942055847001,0,0,0,0,0.549585560411174,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0.353830258013357,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,1.20990716048664,0.91821828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| ||
|short_description=p6@COL6A1 | |short_description=p6@COL6A1 | ||
}} | }} |
Latest revision as of 21:59, 18 September 2015
Short description: | p6@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -481bp_to_ENST00000492851_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.11e-25 | 76 |
multi fate stem cell | 1.72e-20 | 427 |
somatic stem cell | 1.39e-19 | 433 |
muscle precursor cell | 1.39e-19 | 58 |
myoblast | 1.39e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.39e-19 | 58 |
muscle cell | 4.03e-19 | 55 |
stem cell | 2.02e-18 | 441 |
electrically responsive cell | 6.14e-16 | 61 |
electrically active cell | 6.14e-16 | 61 |
smooth muscle cell | 7.46e-15 | 43 |
smooth muscle myoblast | 7.46e-15 | 43 |
skin fibroblast | 1.36e-11 | 23 |
vascular associated smooth muscle cell | 5.41e-11 | 32 |
connective tissue cell | 1.22e-10 | 361 |
mesenchymal cell | 2.78e-08 | 354 |
mesenchymal stem cell of adipose | 8.95e-08 | 8 |
hair follicle cell | 8.58e-07 | 5 |
motile cell | 9.10e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.54e-11 | 14 |