FFCP PHASE1:Hg19::chr15:72102951..72102966,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10002 | |EntrezGene=10002 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=7974 | |HGNC=7974 | ||
|TSSclassifier=strong | |||
|UniProt=B6ZGU0,Q9Y5X4,F1D8Q9 | |UniProt=B6ZGU0,Q9Y5X4,F1D8Q9 | ||
|association_with_transcript=57bp_to_ENST00000398840,NM_014249,NM_016346,uc002ath.1,uc002ati.2_5end | |association_with_transcript=57bp_to_ENST00000398840,NM_014249,NM_016346,uc002ath.1,uc002ati.2_5end | ||
|cluster_id=chr15:72102951..72102966,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_2_at_NR2E3_5end | |description=CAGE_peak_2_at_NR2E3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000306!1.29e-13!4;CL:0002222!1.29e-13!4;CL:0002224!1.29e-13!4 | |ontology_enrichment_celltype=CL:0000306!1.29e-13!4;CL:0002222!1.29e-13!4;CL:0002224!1.29e-13!4 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.52e-87;3!UBERON:0006238;2.63e-07;10 | |ontology_enrichment_development_v019=UBERON:0003056;1.52e-87;3!UBERON:0006238;2.63e-07;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;8.38e-07;11 | |ontology_enrichment_disease_v019=DOID:3093;8.38e-07;11 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,8.38e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.71e-40!5;UBERON:0005388!2.71e-40!5;UBERON:0001802!2.71e-40!5;UBERON:0000970!4.28e-40!20;UBERON:0002104!3.06e-38!21;UBERON:0000020!5.16e-35!23;UBERON:0001032!1.33e-33!24;UBERON:0004456!1.33e-33!24;UBERON:0000019!3.46e-24!19;UBERON:0000047!3.46e-24!19;UBERON:0004088!3.46e-24!19;UBERON:0003072!3.46e-24!19;UBERON:0003071!3.46e-24!19;UBERON:0004128!3.46e-24!19;UBERON:0001456!5.49e-22!21;UBERON:0005085!3.30e-16!29;UBERON:0010077!1.29e-13!4;UBERON:0005389!1.29e-13!4;UBERON:0000484!1.29e-13!4;UBERON:0002546!1.29e-13!4;UBERON:0000965!1.29e-13!4;UBERON:0001803!1.29e-13!4;UBERON:0003073!1.29e-13!4;UBERON:0005426!1.29e-13!4;UBERON:0001444!3.64e-10!48;UBERON:0003056!4.61e-08!61;UBERON:0000076!1.80e-07!8 | |ontology_enrichment_uberon=UBERON:0000966!2.71e-40!5;UBERON:0005388!2.71e-40!5;UBERON:0001802!2.71e-40!5;UBERON:0000970!4.28e-40!20;UBERON:0002104!3.06e-38!21;UBERON:0000020!5.16e-35!23;UBERON:0001032!1.33e-33!24;UBERON:0004456!1.33e-33!24;UBERON:0000019!3.46e-24!19;UBERON:0000047!3.46e-24!19;UBERON:0004088!3.46e-24!19;UBERON:0003072!3.46e-24!19;UBERON:0003071!3.46e-24!19;UBERON:0004128!3.46e-24!19;UBERON:0001456!5.49e-22!21;UBERON:0005085!3.30e-16!29;UBERON:0010077!1.29e-13!4;UBERON:0005389!1.29e-13!4;UBERON:0000484!1.29e-13!4;UBERON:0002546!1.29e-13!4;UBERON:0000965!1.29e-13!4;UBERON:0001803!1.29e-13!4;UBERON:0003073!1.29e-13!4;UBERON:0005426!1.29e-13!4;UBERON:0001444!3.64e-10!48;UBERON:0003056!4.61e-08!61;UBERON:0000076!1.80e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.74e-53;5!UBERON:0005388;3.74e-53;5!UBERON:0001802;3.74e-53;5!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0000019;5.66e-15;19!UBERON:0000047;5.66e-15;19!UBERON:0004088;5.66e-15;19!UBERON:0010230;5.66e-15;19!UBERON:0001456;1.16e-13;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;3.74e-53;5!UBERON:0005388;3.74e-53;5!UBERON:0001802;3.74e-53;5!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0000019;5.66e-15;19!UBERON:0000047;5.66e-15;19!UBERON:0004088;5.66e-15;19!UBERON:0010230;5.66e-15;19!UBERON:0001456;1.16e-13;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.52e-44,6;UBERON:0005388,1.52e-44,6;UBERON:0001802,1.52e-44,6;UBERON:0000970,3.84e-29,21;UBERON:0002104,3.84e-29,21;UBERON:0000020,1.16e-25,24;UBERON:0001032,1.16e-25,24;UBERON:0004456,1.16e-25,24;UBERON:0000019,2.76e-14,20;UBERON:0000047,2.76e-14,20;UBERON:0010312,2.76e-14,20;UBERON:0004088,2.76e-14,20;UBERON:0010230,2.76e-14,20;UBERON:0003072,2.76e-14,20;UBERON:0004128,2.76e-14,20;UBERON:0003071,2.76e-14,20;UBERON:0001456,4.26e-13,22;UBERON:0005085,1.25e-09,31 | |||
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|short_description=p2@NR2E3 | |short_description=p2@NR2E3 | ||
}} | }} |
Latest revision as of 21:50, 18 September 2015
Short description: | p2@NR2E3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NR2E3_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 57bp_to_ENST00000398840, NM_014249, NM_016346, uc002ath.1, uc002ati.2_5end |
EntrezGene: | NR2E3 |
HGNC: | 7974 |
UniProt: | B6ZGU0Q9Y5X4F1D8Q9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 1.52e-44 | 6 |
photoreceptor array | 1.52e-44 | 6 |
posterior segment of eyeball | 1.52e-44 | 6 |
eye | 3.84e-29 | 21 |
visual system | 3.84e-29 | 21 |
sense organ | 1.16e-25 | 24 |
sensory system | 1.16e-25 | 24 |
entire sense organ system | 1.16e-25 | 24 |
camera-type eye | 2.76e-14 | 20 |
simple eye | 2.76e-14 | 20 |
immature eye | 2.76e-14 | 20 |
ocular region | 2.76e-14 | 20 |
eyeball of camera-type eye | 2.76e-14 | 20 |
optic cup | 2.76e-14 | 20 |
optic vesicle | 2.76e-14 | 20 |
eye primordium | 2.76e-14 | 20 |
face | 4.26e-13 | 22 |
ectodermal placode | 1.25e-09 | 31 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 8.38e-07 | 11 |