FFCP PHASE1:Hg19::chr5:78809885..78809920,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:78809885..78809920,- to FFCP PHASE1:Hg19::chr5:78809885..78809920,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9456 | |EntrezGene=9456 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17512 | |HGNC=17512 | ||
|TSSclassifier=strong | |||
|UniProt=Q86YM7 | |UniProt=Q86YM7 | ||
|association_with_transcript=119bp_to_ENST00000334082_5end | |||
|cluster_id=chr5:78809885..78809920,- | |||
|description=CAGE_peak_4_at_HOMER1_5end | |||
|id=chr5:78809885..78809920,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003104;1.88e-07;31 | |||
|ontology_enrichment_disease=DOID:162!4.71e-13!235;DOID:0050687!1.18e-12!143;DOID:14566!1.22e-12!239;DOID:305!3.32e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.38e-09,143;DOID:162,1.05e-08,235;DOID:14566,2.22e-08,239;DOID:305,6.20e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.83e-12!94;UBERON:0001016!1.83e-12!94;UBERON:0001017!2.09e-12!82;UBERON:0005743!3.53e-12!86;UBERON:0000924!7.43e-12!173;UBERON:0006601!7.43e-12!173;UBERON:0004121!2.30e-11!169;UBERON:0001869!8.92e-11!32;UBERON:0002619!1.23e-10!22;UBERON:0000033!4.40e-10!123;UBERON:0000955!4.40e-10!69;UBERON:0006238!4.40e-10!69;UBERON:0000153!5.93e-10!129;UBERON:0007811!5.93e-10!129;UBERON:0001893!7.04e-10!34;UBERON:0002020!8.09e-10!34;UBERON:0003528!8.09e-10!34;UBERON:0001950!9.28e-10!20;UBERON:0002791!2.26e-09!33;UBERON:0002346!3.33e-09!90;UBERON:0001049!6.30e-09!57;UBERON:0005068!6.30e-09!57;UBERON:0006241!6.30e-09!57;UBERON:0007135!6.30e-09!57;UBERON:0000956!8.42e-09!25;UBERON:0000203!8.42e-09!25;UBERON:0003075!9.70e-09!86;UBERON:0007284!9.70e-09!86;UBERON:0002780!2.51e-08!41;UBERON:0001890!2.51e-08!41;UBERON:0006240!2.51e-08!41;UBERON:0003080!1.04e-07!42;UBERON:0002616!5.51e-07!59;UBERON:0003056!6.20e-07!61;UBERON:0000475!7.97e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.39e-13;22!UBERON:0001950;9.16e-12;20!UBERON:0001869;3.28e-11;32!UBERON:0000956;1.17e-10;25!UBERON:0000203;1.17e-10;25!UBERON:0002791;1.84e-10;32!UBERON:0001893;5.51e-10;34!UBERON:0003528;9.75e-10;34!UBERON:0002020;9.75e-10;34!UBERON:0000922;2.18e-07;49!UBERON:0002780;6.24e-07;41!UBERON:0001890;6.24e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.58e-16,89;UBERON:0001017,4.10e-15,81;UBERON:0002619,2.17e-14,22;UBERON:0001869,9.07e-14,32;UBERON:0001950,3.91e-13,20;UBERON:0001893,2.13e-12,34;UBERON:0002791,2.44e-12,32;UBERON:0000955,7.21e-12,68;UBERON:0006238,7.21e-12,68;UBERON:0003528,7.69e-12,34;UBERON:0002020,7.69e-12,34;UBERON:0000956,9.16e-12,25;UBERON:0000203,9.16e-12,25;UBERON:0004121,4.94e-10,171;UBERON:0000924,4.94e-10,171;UBERON:0006601,4.94e-10,171;UBERON:0002780,5.70e-10,41;UBERON:0001890,5.70e-10,41;UBERON:0003080,5.70e-10,41;UBERON:0006240,5.70e-10,41;UBERON:0000073,7.39e-10,53;UBERON:0002616,7.39e-10,53;UBERON:0011216,9.11e-10,223;UBERON:0001049,1.48e-09,56;UBERON:0005068,1.48e-09,56;UBERON:0006241,1.48e-09,56;UBERON:0007135,1.48e-09,56;UBERON:0002346,2.39e-08,86;UBERON:0003075,2.68e-08,82;UBERON:0007284,2.68e-08,82;UBERON:0007023,4.07e-07,114;UBERON:0003056,7.41e-07,61 | |||
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| ||
|short_description=p4@HOMER1 | |||
}} | }} |
Latest revision as of 21:26, 18 September 2015
Short description: | p4@HOMER1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOMER1_5end |
Coexpression cluster: | NA |
Association with transcript: | 119bp_to_ENST00000334082_5end |
EntrezGene: | HOMER1 |
HGNC: | 17512 |
UniProt: | Q86YM7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 7.58e-16 | 89 |
central nervous system | 4.10e-15 | 81 |
regional part of cerebral cortex | 2.17e-14 | 22 |
cerebral hemisphere | 9.07e-14 | 32 |
neocortex | 3.91e-13 | 20 |
telencephalon | 2.13e-12 | 34 |
regional part of telencephalon | 2.44e-12 | 32 |
brain | 7.21e-12 | 68 |
future brain | 7.21e-12 | 68 |
brain grey matter | 7.69e-12 | 34 |
gray matter | 7.69e-12 | 34 |
cerebral cortex | 9.16e-12 | 25 |
pallium | 9.16e-12 | 25 |
ectoderm-derived structure | 4.94e-10 | 171 |
ectoderm | 4.94e-10 | 171 |
presumptive ectoderm | 4.94e-10 | 171 |
regional part of forebrain | 5.70e-10 | 41 |
forebrain | 5.70e-10 | 41 |
anterior neural tube | 5.70e-10 | 41 |
future forebrain | 5.70e-10 | 41 |
regional part of nervous system | 7.39e-10 | 53 |
regional part of brain | 7.39e-10 | 53 |
organ system subdivision | 9.11e-10 | 223 |
neural tube | 1.48e-09 | 56 |
neural rod | 1.48e-09 | 56 |
future spinal cord | 1.48e-09 | 56 |
neural keel | 1.48e-09 | 56 |
neurectoderm | 2.39e-08 | 86 |
neural plate | 2.68e-08 | 82 |
presumptive neural plate | 2.68e-08 | 82 |
adult organism | 4.07e-07 | 114 |
pre-chordal neural plate | 7.41e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.38e-09 | 143 |
cancer | 1.05e-08 | 235 |
disease of cellular proliferation | 2.22e-08 | 239 |
carcinoma | 6.20e-07 | 106 |