FFCP PHASE1:Hg19::chr3:50712305..50712312,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100616138 | |EntrezGene=100616138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=41653 | |HGNC=41653 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-198bp_to_NR_039950_5end | |association_with_transcript=-198bp_to_NR_039950_5end | ||
|cluster_id=chr3:50712305..50712312,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_3_at_MIR4787_5end | |description=CAGE_peak_3_at_MIR4787_5end | ||
|id=chr3:50712305..50712312,+ | |id=chr3:50712305..50712312,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0007190;2.39e-66;1!UBERON:0001875;5.04e-34;2!UBERON:0006514;5.04e-34;2!UBERON:0001869;1.59e-17;32!UBERON:0002021;1.60e-14;5!UBERON:0001893;4.72e-14;34!UBERON:0002780;5.74e-13;41!UBERON:0001890;5.74e-13;41!UBERON:0000200;2.45e-12;6!UBERON:0009663;8.99e-11;7!UBERON:0002791;2.79e-09;32!UBERON:0002420;1.12e-08;9!UBERON:0000125;1.12e-08;9!UBERON:0007245;1.12e-08;9!UBERON:0002308;1.12e-08;9!UBERON:0010009;1.12e-08;9!UBERON:0010011;1.12e-08;9!UBERON:0000454;1.12e-08;9!UBERON:0000073;3.38e-07;53!UBERON:0002616;3.38e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007190,2.39e-66,1;UBERON:0001875,7.05e-34,2;UBERON:0006514,7.05e-34,2;UBERON:0001869,5.33e-19,32;UBERON:0001893,5.55e-18,34;UBERON:0002780,3.52e-15,41;UBERON:0001890,3.52e-15,41;UBERON:0003080,3.52e-15,41;UBERON:0006240,3.52e-15,41;UBERON:0002021,1.40e-14,5;UBERON:0000200,2.45e-12,6;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0009663,9.89e-11,7;UBERON:0003056,1.22e-10,61;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0002791,3.95e-09,32;UBERON:0003528,1.14e-08,34;UBERON:0002020,1.14e-08,34;UBERON:0002420,1.21e-08,9;UBERON:0000125,1.21e-08,9;UBERON:0007245,1.21e-08,9;UBERON:0002308,1.21e-08,9;UBERON:0010009,1.21e-08,9;UBERON:0010011,1.21e-08,9;UBERON:0000454,1.21e-08,9;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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| ||
|short_description=p3@MIR4787 | |short_description=p3@MIR4787 | ||
}} | }} |
Latest revision as of 20:44, 18 September 2015
Short description: | p3@MIR4787 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MIR4787_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -198bp_to_NR_039950_5end |
EntrezGene: | MIR4787 |
HGNC: | 41653 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
paracentral gyrus | 2.39e-66 | 1 |
globus pallidus | 7.05e-34 | 2 |
pallidum | 7.05e-34 | 2 |
cerebral hemisphere | 5.33e-19 | 32 |
telencephalon | 5.55e-18 | 34 |
regional part of forebrain | 3.52e-15 | 41 |
forebrain | 3.52e-15 | 41 |
anterior neural tube | 3.52e-15 | 41 |
future forebrain | 3.52e-15 | 41 |
occipital lobe | 1.40e-14 | 5 |
gyrus | 2.45e-12 | 6 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
telencephalic nucleus | 9.89e-11 | 7 |
pre-chordal neural plate | 1.22e-10 | 61 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
regional part of telencephalon | 3.95e-09 | 32 |
brain grey matter | 1.14e-08 | 34 |
gray matter | 1.14e-08 | 34 |
basal ganglion | 1.21e-08 | 9 |
neural nucleus | 1.21e-08 | 9 |
nuclear complex of neuraxis | 1.21e-08 | 9 |
nucleus of brain | 1.21e-08 | 9 |
aggregate regional part of brain | 1.21e-08 | 9 |
collection of basal ganglia | 1.21e-08 | 9 |
cerebral subcortex | 1.21e-08 | 9 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |