FFCP PHASE1:Hg19::chr1:63788229..63788250,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27022 | |EntrezGene=27022 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3804 | |HGNC=3804 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJU5 | |UniProt=Q9UJU5 | ||
|association_with_transcript=-479bp_to_ENST00000371116,NM_012183,uc001dax.2_5end | |association_with_transcript=-479bp_to_ENST00000371116,NM_012183,uc001dax.2_5end | ||
|cluster_id=chr1:63788229..63788250,+ | |||
|coexpression_cluster_id=C1775 | |coexpression_cluster_id=C1775 | ||
|description=CAGE_peak_1_at_FOXD3_5end | |description=CAGE_peak_1_at_FOXD3_5end | ||
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|ontology_enrichment_celltype=CL:0000148!1.34e-12!10;CL:0000541!1.34e-12!10;CL:0000147!5.28e-08!14;CL:0002322!2.53e-07!5 | |ontology_enrichment_celltype=CL:0000148!1.34e-12!10;CL:0000541!1.34e-12!10;CL:0000147!5.28e-08!14;CL:0002322!2.53e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000148;6.17e-25;10!CL:0000147;4.21e-17;14!CL:0002322;8.57e-14;5!CL:0000710;1.42e-13;20!CL:0002321;2.56e-12;15!CL:0000075;2.31e-09;27!CL:0002567;6.91e-09;3 | |ontology_enrichment_celltype_v019=CL:0000148;6.17e-25;10!CL:0000147;4.21e-17;14!CL:0002322;8.57e-14;5!CL:0000710;1.42e-13;20!CL:0002321;2.56e-12;15!CL:0000075;2.31e-09;27!CL:0002567;6.91e-09;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.39e-25,10;CL:0000541,5.39e-25,10;CL:0000147,3.84e-17,14;CL:0002322,8.53e-14,5;CL:0000710,1.25e-13,20;CL:0000075,2.11e-09,27;CL:0002567,7.03e-09,3;CL:0000133,6.64e-08,59;CL:0000333,4.82e-07,41;CL:0002077,6.03e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.53e-15;10!UBERON:0005564;6.53e-15;10 | |ontology_enrichment_development_v019=UBERON:0009117;6.53e-15;10!UBERON:0005564;6.53e-15;10 | ||
|ontology_enrichment_disease=DOID:3095!8.49e-08!22;DOID:2994!8.49e-08!22;DOID:0050687!3.44e-07!143 | |ontology_enrichment_disease=DOID:3095!8.49e-08!22;DOID:2994!8.49e-08!22;DOID:0050687!3.44e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.21e-07;22!DOID:2994;1.21e-07;22 | |ontology_enrichment_disease_v019=DOID:3095;1.21e-07;22!DOID:2994;1.21e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,1.34e-07,22;DOID:2994,1.34e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003135!1.14e-09!11;UBERON:0007023!1.44e-08!115;UBERON:0000473!2.95e-07!8 | |ontology_enrichment_uberon=UBERON:0003135!1.14e-09!11;UBERON:0007023!1.44e-08!115;UBERON:0000473!2.95e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.33e-20;49!UBERON:0003135;3.84e-16;11!UBERON:0000473;2.43e-14;8!UBERON:0003101;8.62e-09;22!UBERON:0000079;8.62e-09;22!UBERON:0000991;7.55e-08;21 | |ontology_enrichment_uberon_v019=UBERON:0000922;3.33e-20;49!UBERON:0003135;3.84e-16;11!UBERON:0000473;2.43e-14;8!UBERON:0003101;8.62e-09;22!UBERON:0000079;8.62e-09;22!UBERON:0000991;7.55e-08;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,4.90e-16,11;UBERON:0000473,3.10e-14,8;UBERON:0003101,8.91e-09,22;UBERON:0000079,8.91e-09,22;UBERON:0000991,8.44e-08,21;UBERON:0009196,8.44e-08,21;UBERON:0009117,8.44e-08,21;UBERON:0005564,8.44e-08,21;UBERON:0004176,2.30e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0.411167888021826,0.309706370895104,0.575384784644301,0.256160706529101,0.236482229888585,1.37898272294647,0,1.35426486594342,0.188242339542605,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0,1.00499466102697,0.521482918420201,0.65156653411535,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.5651356339751,10.6023814657188,11.6193942869518,11.5063771067061,21.699593175304,6.93456982244077,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0.462985512576611,0,0,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,1.65094525159639,16.4255022990059,11.7217447210047,10.2643467613623,10.3855767630357,5.1058319833466,14.5771480641595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,1.46511143709349,1.56768049849117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,1.92495971052672,0,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.293016358543788,0.36408156524854,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.828851746593443,0,0,0,0,0,0,0,2.36744173528641,0,0,0,0,0,0,0,0.724999575434793,0,0,0.472775363535873,0.344743373241465,1.45802306691627,0.173624994933292,0,0,0,0,0,0.219385397153973,0.435753854075961,0.278847488557207,1.84680620409113,0.113942055847001,0.23056390438806,0,0.108647371922008,0.31900115973192,0,0,0,0,0,0.451191321234361,0,0,0,0,0,0.163232808159148,0,0,0,1.85760885457012,2.4441205797345,5.04085918757057,1.23563938946503,0.939797545549098,0,0.802577647298789,0,0,0,0,0.789168805698781,2.41981432097328,0.91821828489147,0.31593289814244,8.41811148721158,3.5253985075064,0,0.330991955875499,0.941798755221676,0,0,0,0,0.0979923974143777,0.957651272384428,1.04836000945218,0,0,0,0,3.20063754411784,4.85408696803251,1.12990370390266,0,0.19871461170299,0,0.586654148204409,0,3.20179492109029,0.39961921916426,0.288180834308212,0.229073192331831,0.171594997861965,0,1.24252535565433,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.458320848023367,0.717873024576814,1.79711100449092,0.429226048136571,1.11585728720936,1.34366944973453,0,0,0,0,0,0.492137407573744,0,0,0,13.0210050256666,26.2700323900717,19.1102555493425,0,0,0,0,0,0.262272940674991,0.105600336519406,0.179287339332845,1.91915197319445,2.1440859791201,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.855434189421647,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,5.18278517625773,0,0,0,0,0.443716206147409,1.05563885000352,0,0,14.2550170489149,1.14186133417987,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52369796457302,0.385239660814607,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0.607719912354764,0.138258436151731,0.194860308839388,0,0.327130788511688,0.327609848846413,0,0,0.19998739585493,0,0,0,0.920529751259204,0,2.48830904013189,0,1.40172254815686,25.0052847550875,0,0.33946505990805,0.212574920101683,3.47020139925206,1.11728983594649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53360640352062,0,0.115525666150338,0,2.0710797781803,0.198916222116275,0.300841313397029,0.40341013740704,0,0,0,0,0,0,0,0.0634158101939068,0,0.548257766857182,1.98484471355718,0.703484977438482,0,2.14280734351315,0.336283722218824,0,0,0,0.115233987555779,0,0.0679697329768317,0,0.472775363535873,0,1.80534113556182,0,0,3.65263488203798,0,0,3.28792103212619,0,0.23248285073625,0,0,0,0,0,0.430227358820278,0.118332000730565,0.0852134047591577,1.69354820076372,0.22910686854405,0,0,4.80978356730507,0,0,0,0.821302454849976,9.27851545070559,3.88568794447312,0.701818390386317,0,2.49732190632894,1.1294608203896,0.329821550236287,1.35866559210006,0.848915739187391,1.09279780251979,0.470317296361523,0.735444965261716,0.707029641304878,0.392616934229891,0,4.6492130034174,0,0,0.128915775947154,0,0.178553938605658,0,0,0,0.458729283404541,0.860037498908708,2.0510303085114,0,0,6.34832208618481,0,0,0,2.27099564703142,0,0,15.6042909505232,9.88704399482574,12.6814961358086,10.2790091109874,1.06090177505535,1.33982065078089,0,0,0.426467963801962,2.14257988317366,0,0.0620747142958579,0,0.0636471582781649,1.21270313374932,0.870866991587845,3.08009970976753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| ||
|short_description=p1@FOXD3 | |short_description=p1@FOXD3 | ||
}} | }} |
Latest revision as of 20:41, 18 September 2015
Short description: | p1@FOXD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FOXD3_5end |
Coexpression cluster: | C1775_neuroblastoma_iPS_testicular_H9_HES3GFP_skeletal_Melanocyte |
Association with transcript: | -479bp_to_ENST00000371116, NM_012183, uc001dax.2_5end |
EntrezGene: | FOXD3 |
HGNC: | 3804 |
UniProt: | Q9UJU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.39e-25 | 10 |
melanoblast | 5.39e-25 | 10 |
pigment cell | 3.84e-17 | 14 |
embryonic stem cell | 8.53e-14 | 5 |
neurecto-epithelial cell | 1.25e-13 | 20 |
columnar/cuboidal epithelial cell | 2.11e-09 | 27 |
light melanocyte | 7.03e-09 | 3 |
neurectodermal cell | 6.64e-08 | 59 |
migratory neural crest cell | 4.82e-07 | 41 |
ecto-epithelial cell | 6.03e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 4.90e-16 | 11 |
testis | 3.10e-14 | 8 |
male organism | 8.91e-09 | 22 |
male reproductive system | 8.91e-09 | 22 |
gonad | 8.44e-08 | 21 |
indifferent external genitalia | 8.44e-08 | 21 |
indifferent gonad | 8.44e-08 | 21 |
gonad primordium | 8.44e-08 | 21 |
external genitalia | 2.30e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.34e-07 | 22 |
germ cell cancer | 1.34e-07 | 22 |