FFCP PHASE1:Hg19::chr3:50649302..50649333,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:50649302..50649333,+
|short_description=p5@MAPKAPK3
|description=CAGE_peak_5_at_MAPKAPK3_5end
|association_with_transcript=-5bp_to_ENST00000446044,uc003day...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7867 | |EntrezGene=7867 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6888 | |HGNC=6888 | ||
|TSSclassifier=strong | |||
|UniProt=Q16644 | |UniProt=Q16644 | ||
|association_with_transcript=-5bp_to_ENST00000446044,uc003day.1_5end | |||
|cluster_id=chr3:50649302..50649333,+ | |||
|description=CAGE_peak_5_at_MAPKAPK3_5end | |||
|id=chr3:50649302..50649333,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.88e-22!140;CL:0002031!5.32e-21!124;CL:0000037!1.58e-19!172;CL:0000566!1.58e-19!172;CL:0002087!2.65e-19!119;CL:0002032!5.00e-18!165;CL:0000837!5.00e-18!165;CL:0000988!1.67e-17!182;CL:0000838!4.29e-13!52;CL:0000542!2.19e-12!53;CL:0000051!2.19e-12!53;CL:0000084!1.39e-10!25;CL:0000827!1.39e-10!25;CL:0000557!2.39e-10!71;CL:0000766!1.17e-09!76;CL:0000839!8.28e-09!70;CL:0002009!8.20e-08!65;CL:0000791!9.46e-08!18;CL:0000789!9.46e-08!18;CL:0002420!9.46e-08!18;CL:0002419!9.46e-08!18;CL:0000790!9.46e-08!18;CL:0002194!1.13e-07!63;CL:0000576!1.13e-07!63;CL:0000040!1.13e-07!63;CL:0000559!1.13e-07!63;CL:0000763!1.63e-07!112;CL:0000049!1.63e-07!112;CL:0000219!4.58e-07!390;CL:0000134!7.12e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000084;4.93e-18;25!CL:0000791;1.84e-13;18!CL:0000789;1.84e-13;18!CL:0002419;1.84e-13;18!CL:0000542;3.76e-10;53!CL:0000625;1.20e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.19e-21,120;CL:0000738,1.32e-21,136;CL:0002087,3.78e-19,115;CL:0000037,1.28e-18,168;CL:0002032,2.95e-18,161;CL:0000837,2.95e-18,161;CL:0000084,4.55e-18,25;CL:0000827,4.55e-18,25;CL:0000988,7.98e-17,177;CL:0000838,8.92e-17,52;CL:0000542,2.65e-16,53;CL:0000051,2.65e-16,53;CL:0000791,1.27e-13,18;CL:0000789,1.27e-13,18;CL:0002420,1.27e-13,18;CL:0002419,1.27e-13,18;CL:0000790,1.27e-13,18;CL:0000625,4.84e-09,11;CL:0000557,3.16e-08,67;CL:0000766,4.71e-08,72;CL:0000839,1.65e-07,66 | |||
|ontology_enrichment_development_v019=CL:0000790;1.84e-13;18!CL:0000051;3.76e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.92e-12!102;UBERON:0003061!3.92e-12!102;UBERON:0002193!8.66e-11!112;UBERON:0002371!2.05e-09!80;UBERON:0002405!7.89e-09!115;UBERON:0001474!5.68e-08!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.96e-10,98;UBERON:0003061,2.96e-10,98;UBERON:0002193,1.71e-08,108;UBERON:0002370,1.80e-07,4;UBERON:0005058,1.80e-07,4;UBERON:0009113,1.80e-07,4;UBERON:0003295,1.80e-07,4;UBERON:0005562,1.80e-07,4;UBERON:0002405,2.00e-07,93;UBERON:0002371,3.37e-07,76;UBERON:0009722,4.70e-07,11;UBERON:0007690,4.70e-07,11;UBERON:0003351,5.55e-07,6 | |||
|phase1_expression=1.2717486548939,0,0.422863212287913,2.00146596706261,0.893922188854576,0.872338524100369,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0.672325146451775,0,0,0,0.492484232307152,0.408001382488506,0.940364164434263,0,0.410623275218653,0,0.382067028739756,0.246301768349837,0.157421562627358,2.36018566109342,1.91914699048606,0.619264493264304,0,0.30120591877825,0,0.154934401160603,0,0.880801318004542,0.553995408531877,0.802177789880567,1.30206522429511,1.34349284543955,2.26725566213286,0.77272670290256,1.16318591023652,0,0,0.929716147622738,1.23350366406548,0.309706370895104,0.575384784644301,1.2808035326455,0.945928919554341,0,0.645484683583826,1.35426486594342,0.564727018627814,0.545812300115692,0.674170453335254,0.306083892370903,1.60464513538047,0.639337125799041,0.659702600373432,0.398927315243264,0.426224750532694,0.580418477257168,1.13477044938228,0.622822248995575,1.7587406567972,1.5644487552606,1.08594422352558,0,1.10483290796269,0,1.05627643155971,0.637812899895131,0.419317291016752,0.898629049171961,0.300353785683013,0.48217676009124,1.14005097496499,0,0.182664153764634,1.75996244461323,0.546138611262131,0.889509253863555,0.853460445133014,0.800791974072025,0.574752439954483,1.98313461835459,1.90810750907073,2.27685187643779,2.34894875748376,1.14681968437569,0,0.560508562981536,0.526768169550154,0.590129310341499,0.393010762749165,1.02800749499755,2.00623794468814,2.60737813306872,0.946895611469467,1.94826728407911,2.33961959458865,3.24066498222321,0.443067789167242,0.541607727530031,1.40900451698243,1.43065282315866,0.822189523018381,1.10540007114339,3.47763702882063,3.41059095272739,0.802622484269139,5.22677619024884,1.81294948316106,2.29932296161153,1.03088233644789,0.253019692019503,2.86708872891687,1.95325036156926,1.90090408889675,0.451725357233318,1.4078527226986,1.24930726552346,0.473554504088034,0,2.01606743224732,2.13952156626806,2.46201486600758,0,0.670700859703636,0,0,0,0.144846518960824,0.795285947051099,0.486634870302636,0.283604451492204,0,0.087834785693126,1.11332214173056,1.09288586487763,0.370784442784429,15.2537275017701,8.70648686496336,12.3650903282545,0.476981248610684,0.571994910780128,3.34311751196608,0.198762407366705,0.860234595106124,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0.735326160691737,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0,0.286836620748814,0.709336764396714,0,0,0,0.311211035399766,0.269421344139376,0,0.302714855289863,0,0.234321431833797,0,0,0,0.117434498643765,0.647491777472526,0.140450806702248,0.204154171254893,0.368502951935304,0.516628905878827,0,0.247266929278557,0.910161361938026,0,0.168336113954066,0.125118519871964,0,0,0,0.45071417671979,0.226864366320042,0.358779271377724,0.640672166455702,0.211931901159562,0.300091096084402,0.412210116953756,0.515281080091258,0.558350568994769,0.168776332241266,0.194874010322397,0.252433774244115,0.276149695926898,0.161646056818812,0,0.403008392910561,0.508681776931463,0.193260853163297,0.272746120590835,0.573609190778008,0.121973706129595,0.530119073285941,0.116193942869518,0.310983165046111,0.504641701751257,0.36497735907583,0,0,0,0.464367928031979,0,0.354920400119532,0.168584690078102,0.241011029883482,0,0.217879444092406,0,0.134831308160164,0.392442930250692,0.38474715694639,0,0,0,2.94017422771084,2.53510069643662,0,1.77236972004421,0.441463099414651,0,0.171567810298526,0.439001141634502,0,0.100528972411631,0.462942225792648,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0.738651018262192,1.17002132569619,0.445893486866185,0,0,0,0.0895585227028483,0.290633938513962,0,0.985326475791887,2.11316241631742,3.10992173311158,2.88239906833923,3.53478813593864,0.888970520090367,1.14596527667483,1.17217447210047,1.71072446022705,0,0,0.285826432630578,0.448524337381443,0,0.5867062865676,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,1.0656887160644,0.428933980974443,0,0,0,0.710783897485092,0.791951872933429,1.20575750823834,0,0.299918973546171,0,0.502257091432126,0,0.479249710983165,0,0,0,0.410952645100767,0.179060963239896,2.01753259188349,2.36436912242313,1.94064817373566,2.31017465303547,0,0,0,0.335032530668698,0,0.749007023947182,0,0.414415513436035,0.36807447515742,0,0,0,0.178428988797162,0.157702415033935,0.234282829985426,1.20378439891088,0,0,0,0.368738337083406,0.260650843404249,0.783204629850962,0,1.03384013061444,0.215714200818617,0.533637789017222,2.12189300012382,0,1.20956117331872,0.992431231275107,0.153461973288062,0.841980283299221,0.896974044789907,0,0.804269605718038,0,0.462629081407967,0,0.246381468041427,0,0.232420756919918,0.241718899183244,0.40101294060657,0.920809889358963,0,0.364182336013434,0,0,0.385076685522074,0.784349769176855,0,0.211103257785751,1.13733384070897,0.340187410553031,0.215915916102139,0,0.270946437543853,0,0.764628819135115,0,0,0,0,0.512900250232778,0,0,2.16386124460217,0.183138929636687,0.330037999682352,0,0,0,0.09667071829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| ||
|short_description=p5@MAPKAPK3 | |||
}} | }} |
Latest revision as of 20:36, 18 September 2015
Short description: | p5@MAPKAPK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MAPKAPK3_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000446044, uc003day.1_5end |
EntrezGene: | MAPKAPK3 |
HGNC: | 6888 |
UniProt: | Q16644 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.19e-21 | 120 |
leukocyte | 1.32e-21 | 136 |
nongranular leukocyte | 3.78e-19 | 115 |
hematopoietic stem cell | 1.28e-18 | 168 |
hematopoietic oligopotent progenitor cell | 2.95e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.95e-18 | 161 |
T cell | 4.55e-18 | 25 |
pro-T cell | 4.55e-18 | 25 |
hematopoietic cell | 7.98e-17 | 177 |
lymphoid lineage restricted progenitor cell | 8.92e-17 | 52 |
lymphocyte | 2.65e-16 | 53 |
common lymphoid progenitor | 2.65e-16 | 53 |
mature alpha-beta T cell | 1.27e-13 | 18 |
alpha-beta T cell | 1.27e-13 | 18 |
immature T cell | 1.27e-13 | 18 |
mature T cell | 1.27e-13 | 18 |
immature alpha-beta T cell | 1.27e-13 | 18 |
CD8-positive, alpha-beta T cell | 4.84e-09 | 11 |
granulocyte monocyte progenitor cell | 3.16e-08 | 67 |
myeloid leukocyte | 4.71e-08 | 72 |
myeloid lineage restricted progenitor cell | 1.65e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.96e-10 | 98 |
blood island | 2.96e-10 | 98 |
hemolymphoid system | 1.71e-08 | 108 |
thymus | 1.80e-07 | 4 |
hemolymphoid system gland | 1.80e-07 | 4 |
thymic region | 1.80e-07 | 4 |
pharyngeal gland | 1.80e-07 | 4 |
thymus primordium | 1.80e-07 | 4 |
immune system | 2.00e-07 | 93 |
bone marrow | 3.37e-07 | 76 |
entire pharyngeal arch endoderm | 4.70e-07 | 11 |
early pharyngeal endoderm | 4.70e-07 | 11 |
pharyngeal epithelium | 5.55e-07 | 6 |