FFCP PHASE1:Hg19::chr21:46424480..46424506,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=378825 | |EntrezGene=378825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=19725 | |HGNC=19725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=135bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end | |association_with_transcript=135bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end | ||
|cluster_id=chr21:46424480..46424506,- | |||
|coexpression_cluster_id=C2636 | |coexpression_cluster_id=C2636 | ||
|description=CAGE_peak_1_at_LINC00162_5end | |description=CAGE_peak_1_at_LINC00162_5end | ||
|id=chr21:46424480..46424506,- | |id=chr21:46424480..46424506,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002541;8.96e-10;3!CL:0000077;2.94e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,8.83e-10,3;CL:0000066,1.07e-08,253;CL:0000077,3.01e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.84e-12;29 | |||
|ontology_enrichment_disease=DOID:2394!2.54e-08!14 | |ontology_enrichment_disease=DOID:2394!2.54e-08!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.28e-12,235;DOID:305,1.66e-12,106;DOID:14566,3.77e-12,239;DOID:0050687,1.94e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!6.51e-18!9;UBERON:0001557!1.71e-10!19;UBERON:0003076!5.32e-09!15;UBERON:0003057!5.32e-09!15;UBERON:0001049!7.62e-09!57;UBERON:0005068!7.62e-09!57;UBERON:0006241!7.62e-09!57;UBERON:0007135!7.62e-09!57;UBERON:0002298!7.80e-09!8;UBERON:0004732!9.37e-09!13;UBERON:0004733!2.10e-07!12;UBERON:0002028!2.10e-07!12;UBERON:0007277!2.10e-07!12 | |ontology_enrichment_uberon=UBERON:0001737!6.51e-18!9;UBERON:0001557!1.71e-10!19;UBERON:0003076!5.32e-09!15;UBERON:0003057!5.32e-09!15;UBERON:0001049!7.62e-09!57;UBERON:0005068!7.62e-09!57;UBERON:0006241!7.62e-09!57;UBERON:0007135!7.62e-09!57;UBERON:0002298!7.80e-09!8;UBERON:0004732!9.37e-09!13;UBERON:0004733!2.10e-07!12;UBERON:0002028!2.10e-07!12;UBERON:0007277!2.10e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.18e-30;9!UBERON:0001557;3.18e-30;9!UBERON:0003124;8.96e-10;3!UBERON:0000920;8.96e-10;3!UBERON:0000072;2.27e-08;37!UBERON:0001264;2.11e-07;10!UBERON:0002075;2.53e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.29e-30,9;UBERON:0001557,2.66e-16,19;UBERON:0000920,8.83e-10,3;UBERON:0008947,2.16e-08,38;UBERON:0003258,2.16e-08,38;UBERON:0000072,1.31e-07,47;UBERON:0001264,1.86e-07,10;UBERON:0002075,2.25e-07,18;UBERON:0003124,4.92e-07,7 | |||
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| ||
|short_description=p1@LINC00162 | |short_description=p1@LINC00162 | ||
}} | }} |
Latest revision as of 20:21, 18 September 2015
Short description: | p1@LINC00162 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00162_5end |
Coexpression cluster: | C2636_Hep2_Mammary_cervical_mesenchymal_mesothelioma_giant_pagetoid |
Association with transcript: | 135bp_to_ENST00000422199, NR_024089, uc002zgo.2_5end |
EntrezGene: | LINC00162 |
HGNC: | 19725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 8.83e-10 | 3 |
epithelial cell | 1.07e-08 | 253 |
mesothelial cell | 3.01e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.29e-30 | 9 |
upper respiratory tract | 2.66e-16 | 19 |
egg chorion | 8.83e-10 | 3 |
respiratory primordium | 2.16e-08 | 38 |
endoderm of foregut | 2.16e-08 | 38 |
segment of respiratory tract | 1.31e-07 | 47 |
pancreas | 1.86e-07 | 10 |
viscus | 2.25e-07 | 18 |
chorion | 4.92e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.28e-12 | 235 |
carcinoma | 1.66e-12 | 106 |
disease of cellular proliferation | 3.77e-12 | 239 |
cell type cancer | 1.94e-11 | 143 |