FFCP PHASE1:Hg19::chr1:62672541..62672554,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54596 | |EntrezGene=54596 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=25595 | |HGNC=25595 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T7N2 | |UniProt=Q5T7N2 | ||
|association_with_transcript=-53bp_to_AK001746_5end | |association_with_transcript=-53bp_to_AK001746_5end | ||
|cluster_id=chr1:62672541..62672554,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_2_at_L1TD1_5end | |description=CAGE_peak_2_at_L1TD1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!7.57e-22!5;CL:0000039!2.93e-10!7;CL:0000586!2.93e-10!7;CL:0000540!3.11e-07!6;CL:0000031!3.11e-07!6;CL:0000404!3.11e-07!6 | |ontology_enrichment_celltype=CL:0002322!7.57e-22!5;CL:0000039!2.93e-10!7;CL:0000586!2.93e-10!7;CL:0000540!3.11e-07!6;CL:0000031!3.11e-07!6;CL:0000404!3.11e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.39e-65;5!CL:0000039;1.43e-30;7!CL:0000586;1.43e-30;7!CL:0002321;5.52e-22;15!CL:0000540;7.04e-21;6!CL:0000404;7.04e-21;6!CL:0000148;1.75e-12;10!CL:0000147;4.43e-09;14 | |ontology_enrichment_celltype_v019=CL:0002322;1.39e-65;5!CL:0000039;1.43e-30;7!CL:0000586;1.43e-30;7!CL:0002321;5.52e-22;15!CL:0000540;7.04e-21;6!CL:0000404;7.04e-21;6!CL:0000148;1.75e-12;10!CL:0000147;4.43e-09;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.39e-65,5;CL:0000039,1.43e-30,7;CL:0000586,1.43e-30,7;CL:0000540,7.28e-21,6;CL:0000031,7.28e-21,6;CL:0000404,7.28e-21,6;CL:0000047,8.14e-16,8;CL:0000148,1.68e-12,10;CL:0000541,1.68e-12,10;CL:0000147,4.30e-09,14;CL:0000133,1.41e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.58e-21;10!UBERON:0005564;1.58e-21;10!CL:0000031;7.04e-21;6 | |ontology_enrichment_development_v019=UBERON:0009117;1.58e-21;10!UBERON:0005564;1.58e-21;10!CL:0000031;7.04e-21;6 | ||
|ontology_enrichment_disease=DOID:3095!4.83e-11!22;DOID:2994!4.83e-11!22 | |ontology_enrichment_disease=DOID:3095!4.83e-11!22;DOID:2994!4.83e-11!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;4.07e-15;22!DOID:2994;4.07e-15;22 | |ontology_enrichment_disease_v019=DOID:3095;4.07e-15;22!DOID:2994;4.07e-15;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,4.01e-15,22;DOID:2994,4.01e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!8.70e-19!8;UBERON:0003135!1.77e-13!11;UBERON:0005631!3.94e-10!14;UBERON:0000158!3.94e-10!14;UBERON:0000991!6.94e-09!21;UBERON:0009196!6.94e-09!21;UBERON:0009117!6.94e-09!21;UBERON:0005564!6.94e-09!21;UBERON:0004176!1.95e-08!22;UBERON:0003101!1.98e-08!22;UBERON:0000079!1.98e-08!22 | |ontology_enrichment_uberon=UBERON:0000473!8.70e-19!8;UBERON:0003135!1.77e-13!11;UBERON:0005631!3.94e-10!14;UBERON:0000158!3.94e-10!14;UBERON:0000991!6.94e-09!21;UBERON:0009196!6.94e-09!21;UBERON:0009117!6.94e-09!21;UBERON:0005564!6.94e-09!21;UBERON:0004176!1.95e-08!22;UBERON:0003101!1.98e-08!22;UBERON:0000079!1.98e-08!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.31e-27;8!UBERON:0003135;1.32e-19;11!UBERON:0000922;3.37e-13;49!UBERON:0000991;2.06e-10;21!UBERON:0003101;5.98e-10;22!UBERON:0000079;5.98e-10;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;8.31e-27;8!UBERON:0003135;1.32e-19;11!UBERON:0000922;3.37e-13;49!UBERON:0000991;2.06e-10;21!UBERON:0003101;5.98e-10;22!UBERON:0000079;5.98e-10;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.31e-27,8;UBERON:0003135,1.32e-19,11;UBERON:0000991,2.06e-10,21;UBERON:0009196,2.06e-10,21;UBERON:0009117,2.06e-10,21;UBERON:0005564,2.06e-10,21;UBERON:0004176,5.98e-10,22;UBERON:0003101,5.98e-10,22;UBERON:0000079,5.98e-10,22;UBERON:0003133,7.62e-07,48 | |||
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| ||
|short_description=p2@L1TD1 | |short_description=p2@L1TD1 | ||
}} | }} |
Latest revision as of 19:35, 18 September 2015
Short description: | p2@L1TD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_L1TD1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -53bp_to_AK001746_5end |
EntrezGene: | L1TD1 |
HGNC: | 25595 |
UniProt: | Q5T7N2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.39e-65 | 5 |
germ line cell | 1.43e-30 | 7 |
germ cell | 1.43e-30 | 7 |
neuron | 7.28e-21 | 6 |
neuroblast | 7.28e-21 | 6 |
electrically signaling cell | 7.28e-21 | 6 |
neuronal stem cell | 8.14e-16 | 8 |
melanocyte | 1.68e-12 | 10 |
melanoblast | 1.68e-12 | 10 |
pigment cell | 4.30e-09 | 14 |
neurectodermal cell | 1.41e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 8.31e-27 | 8 |
male reproductive organ | 1.32e-19 | 11 |
gonad | 2.06e-10 | 21 |
indifferent external genitalia | 2.06e-10 | 21 |
indifferent gonad | 2.06e-10 | 21 |
gonad primordium | 2.06e-10 | 21 |
external genitalia | 5.98e-10 | 22 |
male organism | 5.98e-10 | 22 |
male reproductive system | 5.98e-10 | 22 |
reproductive organ | 7.62e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.01e-15 | 22 |
germ cell cancer | 4.01e-15 | 22 |