FFCP PHASE1:Hg19::chr1:174846427..174846450,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9910 | |EntrezGene=9910 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24663 | |HGNC=24663 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-79bp_to_uc001gkh.3_5end | |association_with_transcript=-79bp_to_uc001gkh.3_5end | ||
|cluster_id=chr1:174846427..174846450,+ | |||
|coexpression_cluster_id=C3906 | |coexpression_cluster_id=C3906 | ||
|description=CAGE_peak_16_at_RABGAP1L_5end | |description=CAGE_peak_16_at_RABGAP1L_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000791!2.79e-08!18;CL:0000789!2.79e-08!18;CL:0002420!2.79e-08!18;CL:0002419!2.79e-08!18;CL:0000790!2.79e-08!18 | |ontology_enrichment_celltype=CL:0000791!2.79e-08!18;CL:0000789!2.79e-08!18;CL:0002420!2.79e-08!18;CL:0002419!2.79e-08!18;CL:0000790!2.79e-08!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.41e-17;18!CL:0000789;2.41e-17;18!CL:0002419;2.41e-17;18!CL:0000624;3.19e-14;6!CL:0000084;6.11e-12;25!CL:0000625;9.24e-08;11 | |ontology_enrichment_celltype_v019=CL:0000791;2.41e-17;18!CL:0000789;2.41e-17;18!CL:0002419;2.41e-17;18!CL:0000624;3.19e-14;6!CL:0000084;6.11e-12;25!CL:0000625;9.24e-08;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.90e-17,18;CL:0000789,1.90e-17,18;CL:0002420,1.90e-17,18;CL:0002419,1.90e-17,18;CL:0000790,1.90e-17,18;CL:0000624,3.03e-14,6;CL:0000084,5.19e-12,25;CL:0000827,5.19e-12,25;CL:0000625,7.85e-08,11;CL:0000542,5.07e-07,53;CL:0000051,5.07e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;2.41e-17;18 | |ontology_enrichment_development_v019=CL:0000790;2.41e-17;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1036;1.09e-11;8!DOID:8692;5.07e-08;31 | |ontology_enrichment_disease_v019=DOID:1036;1.09e-11;8!DOID:8692;5.07e-08;31 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,1.06e-11,8;DOID:8692,3.45e-08,31;DOID:1240,1.34e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.01e-25!115;UBERON:0001049!7.48e-08!57;UBERON:0005068!7.48e-08!57;UBERON:0006241!7.48e-08!57;UBERON:0007135!7.48e-08!57;UBERON:0000178!8.22e-08!15;UBERON:0000179!8.22e-08!15;UBERON:0000463!8.22e-08!15 | |ontology_enrichment_uberon=UBERON:0007023!4.01e-25!115;UBERON:0001049!7.48e-08!57;UBERON:0005068!7.48e-08!57;UBERON:0006241!7.48e-08!57;UBERON:0007135!7.48e-08!57;UBERON:0000178!8.22e-08!15;UBERON:0000179!8.22e-08!15;UBERON:0000463!8.22e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.33e-13;22!UBERON:0004921;3.66e-13;33!UBERON:0002108;5.94e-12;4!UBERON:0000160;2.23e-11;17!UBERON:0001829;9.72e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0005409;1.33e-13;22!UBERON:0004921;3.66e-13;33!UBERON:0002108;5.94e-12;4!UBERON:0000160;2.23e-11;17!UBERON:0001829;9.72e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,7.46e-12,25;UBERON:0002108,8.50e-12,4;UBERON:0000160,1.86e-11,17;UBERON:0001829,5.95e-08,2 | |||
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| ||
|short_description=p16@RABGAP1L | |short_description=p16@RABGAP1L | ||
}} | }} |
Latest revision as of 19:17, 18 September 2015
Short description: | p16@RABGAP1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RABGAP1L_5end |
Coexpression cluster: | C3906_CD4_diffuse_acute_chronic_pancreas_gastrointestinal_temporal |
Association with transcript: | -79bp_to_uc001gkh.3_5end |
EntrezGene: | RABGAP1L |
HGNC: | 24663 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.90e-17 | 18 |
alpha-beta T cell | 1.90e-17 | 18 |
immature T cell | 1.90e-17 | 18 |
mature T cell | 1.90e-17 | 18 |
immature alpha-beta T cell | 1.90e-17 | 18 |
CD4-positive, alpha-beta T cell | 3.03e-14 | 6 |
T cell | 5.19e-12 | 25 |
pro-T cell | 5.19e-12 | 25 |
CD8-positive, alpha-beta T cell | 7.85e-08 | 11 |
lymphocyte | 5.07e-07 | 53 |
common lymphoid progenitor | 5.07e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 7.46e-12 | 25 |
small intestine | 8.50e-12 | 4 |
intestine | 1.86e-11 | 17 |
major salivary gland | 5.95e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.06e-11 | 8 |
myeloid leukemia | 3.45e-08 | 31 |
leukemia | 1.34e-07 | 39 |